Csor.00g228900 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g228900
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	polygalacturonase-like
Location	Csor_Chr10: 4190757 .. 4191359 (+)
RNA-Seq Expression	Csor.00g228900
Synteny	Csor.00g228900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAAATTAAGTTTGAGACGTATTCTAACAATACCGACGTCTCTATAAGTAGTAATCCTCTTGGCCAAATGATCCAATTCCATCTTCCAATGGCCAAATTTTCCAACCATTCATCACTTCCCTCGCCATTTCAACCATTTATCGTCATACTCGTCATCGTCTTCTTCCTTTTCCTTACGATCACAACGTCATACTCTGCGACTTTATTGAACATTTTGGATTTCGGTGCCATACGCGGCGGGGGACGGGATTCGAACCCGGCCTTTCGCCGTGCATGGGCAAAGGCTTGCATGTCATCGGAATCCACCATTGTTTACGTTCCAAACGGGAGGTTTTTGGTTCGGCCGATCGAGTTCCACGGCGGGTGTGGCAACAAGGATATTAGTTTCCATATCGACGGGGCTCTGGTTGCACCGTCCGATTATCGTATCCTTGGCGACCTCAGAAGCTGGCTGAGCTTTGATGGCGTTGATGGCGTTACTTTGAGTGGTGGAGTTCTTGATGCCAACGGCGCCGCCTTGTGGGACTGCAAATCCTCCGCCGCCCACTGCCCCGTCGGAGCCATGGTGCCTACCTCTAATTCTAGTTCTATTATTTAA

mRNA sequence

ATGAACGAAATTAAGTTTGAGACGTATTCTAACAATACCGACGTCTCTATAAGTAGTAATCCTCTTGGCCAAATGATCCAATTCCATCTTCCAATGGCCAAATTTTCCAACCATTCATCACTTCCCTCGCCATTTCAACCATTTATCGTCATACTCGTCATCGTCTTCTTCCTTTTCCTTACGATCACAACGTCATACTCTGCGACTTTATTGAACATTTTGGATTTCGGTGCCATACGCGGCGGGGGACGGGATTCGAACCCGGCCTTTCGCCGTGCATGGGCAAAGGCTTGCATGTCATCGGAATCCACCATTGTTTACGTTCCAAACGGGAGGTTTTTGGTTCGGCCGATCGAGTTCCACGGCGGGTGTGGCAACAAGGATATTAGTTTCCATATCGACGGGGCTCTGGTTGCACCGTCCGATTATCGTATCCTTGGCGACCTCAGAAGCTGGCTGAGCTTTGATGGCGTTGATGGCGTTACTTTGAGTGGTGGAGTTCTTGATGCCAACGGCGCCGCCTTGTGGGACTGCAAATCCTCCGCCGCCCACTGCCCCGTCGGAGCCATGGTGCCTACCTCTAATTCTAGTTCTATTATTTAA

Coding sequence (CDS)

ATGAACGAAATTAAGTTTGAGACGTATTCTAACAATACCGACGTCTCTATAAGTAGTAATCCTCTTGGCCAAATGATCCAATTCCATCTTCCAATGGCCAAATTTTCCAACCATTCATCACTTCCCTCGCCATTTCAACCATTTATCGTCATACTCGTCATCGTCTTCTTCCTTTTCCTTACGATCACAACGTCATACTCTGCGACTTTATTGAACATTTTGGATTTCGGTGCCATACGCGGCGGGGGACGGGATTCGAACCCGGCCTTTCGCCGTGCATGGGCAAAGGCTTGCATGTCATCGGAATCCACCATTGTTTACGTTCCAAACGGGAGGTTTTTGGTTCGGCCGATCGAGTTCCACGGCGGGTGTGGCAACAAGGATATTAGTTTCCATATCGACGGGGCTCTGGTTGCACCGTCCGATTATCGTATCCTTGGCGACCTCAGAAGCTGGCTGAGCTTTGATGGCGTTGATGGCGTTACTTTGAGTGGTGGAGTTCTTGATGCCAACGGCGCCGCCTTGTGGGACTGCAAATCCTCCGCCGCCCACTGCCCCGTCGGAGCCATGGTGCCTACCTCTAATTCTAGTTCTATTATTTAA

Protein sequence

MNEIKFETYSNNTDVSISSNPLGQMIQFHLPMAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAMVPTSNSSSII

Homology

[Close]

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 65/148 (43.92%), Postives = 89/148 (60.14%), Query Frame = 0


Query: 55  VFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFL 114
           + F+F+  +   S    N+   GA   G  DS  AF  AWAKAC S    ++YVP G F 
Sbjct: 12  LIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFF 71

Query: 115 VRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDANGAA 174
           +R + F G C N  I+F I G LVAPSDYR++G+  +W+ F  V+GVT+SGG+LD  G A
Sbjct: 72  LRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTA 131

Query: 175 LWDCKS-SAAHCPVGA-MVPTSNSSSII 201
           LW CK+     CP GA  +  S+S++I+
Sbjct: 132 LWACKACHGESCPSGATTLGFSDSNNIV 159

[Close]

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 52  LVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNG 111
           L+I+ F  ++       + LN+L +GA   G +DS  AF  AW  AC S+  T + VP G
Sbjct: 14  LIILDFTLISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKG 73

Query: 112 RFLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDA 171
           RFLV  + FHG  C    IS  I G++VAP D+RI+   + W+ F+ V  V++ GG+LDA
Sbjct: 74  RFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDA 133

Query: 172 NGAALWDCKSSAAH-CPVGA 190
            G +LW CK++  H CP GA
Sbjct: 134 QGTSLWKCKNNGGHNCPTGA 153

[Close]

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot
Match: P48978 (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-16
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 63  TTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEFHG 122
           T+S  A  +++ DFGA +G G D   AF +AW  AC SS + ++ VP   +LVRPIEF G
Sbjct: 91  TSSAPAKTISVDDFGA-KGNGADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEFSG 150

Query: 123 GCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSG-GVLDANGAALW--DCK 182
            C    ++  I G + A  D  I  D+  WL FD V  + + G G ++ NG   W   CK
Sbjct: 151 PC-KSQLTLQIYGTIEASEDRSIYKDIDHWLIFDNVQNLLVVGPGTINGNGNIWWKNSCK 210

Query: 183 SSAAHCPVGAMVPTS 195
                 P G   PT+
Sbjct: 211 IK-PQPPCGTYAPTA 222

[Close]

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-15
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 71  LNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDIS 130
           +N+ DFGA +G GRD   AF +AW  AC S+ S ++ VP   +LVRPI F G C    ++
Sbjct: 90  VNVDDFGA-KGDGRDDTKAFEKAWKAACSSTSSAVLLVPKKNYLVRPISFSGPC-KSGLT 149

Query: 131 FHIDGALVAP---SDYRILGDLRSWLSFDGVDGVTL-SGGVLDANGAALW--DCKSSAA 184
             I G + A    SDYR   D R WL FD V  + +  GG ++ NG   W   CK++ A
Sbjct: 150 MQIYGTIEASDDRSDYR--KDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKTNKA 204

[Close]

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot
Match: Q8RY29 (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 69  TLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGR-FLVRPIEFHGGCGNK 128
           T +++ DFGA   G  D   AF  AW KAC S+ +  + VP G  +L++ I+  G C N 
Sbjct: 66  TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPC-NS 125

Query: 129 DISFHIDGALVAP---SDYRILGDLRSWLSFDGVDGVTLSG---GVLDANGAALW--DCK 184
            ++  I G L A    SDY+   D+  W+ FDGV+ +++ G   GV+D NG   W   CK
Sbjct: 126 ILTVQIFGTLSASQKRSDYK---DISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCK 185

[Close]

BLAST of Csor.00g228900 vs. NCBI nr
Match: KAG6590113.1 (hypothetical protein SDJN03_15536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400 bits (1027), Expect = 1.84e-140
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MNEIKFETYSNNTDVSISSNPLGQMIQFHLPMAKFSNHSSLPSPFQPFIVILVIVFFLFL 60
           MNEIKFETYSNNTDVSISSNPLGQMIQFHLPMAKFSNHSSLPSPFQPFIVILVIVFFLFL
Sbjct: 1   MNEIKFETYSNNTDVSISSNPLGQMIQFHLPMAKFSNHSSLPSPFQPFIVILVIVFFLFL 60

Query: 61  TITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEF 120
           TITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEF
Sbjct: 61  TITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEF 120

Query: 121 HGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDANGAALWDCKS 180
           HGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDANGAALWDCKS
Sbjct: 121 HGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDANGAALWDCKS 180

Query: 181 SAAHCPVGAMVPTSNSSSII 200
           SAAHCPVGAMVPTSNSSSII
Sbjct: 181 SAAHCPVGAMVPTSNSSSII 200

[Close]

BLAST of Csor.00g228900 vs. NCBI nr
Match: KAG7023779.1 (hypothetical protein SDJN02_14805, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336 bits (862), Expect = 8.80e-116
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDS+PAFR
Sbjct: 1   MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS
Sbjct: 61  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAMVPTSNSSSII 200
           WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAMVPTSNSSSII
Sbjct: 121 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAMVPTSNSSSII 169

[Close]

BLAST of Csor.00g228900 vs. NCBI nr
Match: XP_023515405.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (782), Expect = 3.55e-100
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSSLPSPFQPFIVILVIVFFLF TITTSYSATLLN+LDFGAIRGGGRDS+PAFR
Sbjct: 1   MAKFSNHSSLPSPFQPFIVILVIVFFLFHTITTSYSATLLNVLDFGAIRGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKACMSSESTIVYVP GRFLVRPIEFHGGCGN DISFHIDGALVAPSDYRILGD+ S
Sbjct: 61  RAWAKACMSSESTIVYVPKGRFLVRPIEFHGGCGNNDISFHIDGALVAPSDYRILGDVGS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 190
           WLSFDGVDGVTLSGGVLDANGAALWDCK+SA HCPVGAM
Sbjct: 121 WLSFDGVDGVTLSGGVLDANGAALWDCKASADHCPVGAM 159

[Close]

BLAST of Csor.00g228900 vs. NCBI nr
Match: XP_022960566.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 303 bits (776), Expect = 2.87e-99
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSSLPSPFQPFIVILV+VF LF  IT SYSATLLN+LDFGAI GGGRDS+PAFR
Sbjct: 1   MAKFSNHSSLPSPFQPFIVILVLVFLLFHMITKSYSATLLNVLDFGAIHGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKACMSSESTIVYVPNGRFLV PIEFHGGCGNKDISFHIDGALVAPSDYRILGD+RS
Sbjct: 61  RAWAKACMSSESTIVYVPNGRFLVWPIEFHGGCGNKDISFHIDGALVAPSDYRILGDVRS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 190
           WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM
Sbjct: 121 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 159

[Close]

BLAST of Csor.00g228900 vs. NCBI nr
Match: XP_022987940.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 298 bits (764), Expect = 1.88e-97
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSS PSPFQPFIVILV+VFFLF TITTS+SATLLN+LDFGAIRGGGRDS+PAFR
Sbjct: 1   MAKFSNHSSRPSPFQPFIVILVVVFFLFHTITTSHSATLLNVLDFGAIRGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKAC SSESTIVYVP GRFLVRPIEFHGGCGN DISFHIDGALVAPSDYRILGD+ S
Sbjct: 61  RAWAKACTSSESTIVYVPKGRFLVRPIEFHGGCGNNDISFHIDGALVAPSDYRILGDVGS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 190
           WLSFDGVDGV+LSGGVLDANGAALW+CKSSAAHCPVGAM
Sbjct: 121 WLSFDGVDGVSLSGGVLDANGAALWNCKSSAAHCPVGAM 159

[Close]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL
Match: A0A6J1H7Y9 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111461305 PE=3 SV=1)

HSP 1 Score: 303 bits (776), Expect = 1.39e-99
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSSLPSPFQPFIVILV+VF LF  IT SYSATLLN+LDFGAI GGGRDS+PAFR
Sbjct: 1   MAKFSNHSSLPSPFQPFIVILVLVFLLFHMITKSYSATLLNVLDFGAIHGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKACMSSESTIVYVPNGRFLV PIEFHGGCGNKDISFHIDGALVAPSDYRILGD+RS
Sbjct: 61  RAWAKACMSSESTIVYVPNGRFLVWPIEFHGGCGNKDISFHIDGALVAPSDYRILGDVRS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 190
           WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM
Sbjct: 121 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 159

[Close]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL
Match: A0A6J1JI71 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111485342 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 9.11e-98
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAKFSNHSS PSPFQPFIVILV+VFFLF TITTS+SATLLN+LDFGAIRGGGRDS+PAFR
Sbjct: 1   MAKFSNHSSRPSPFQPFIVILVVVFFLFHTITTSHSATLLNVLDFGAIRGGGRDSSPAFR 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRS 151
           RAWAKAC SSESTIVYVP GRFLVRPIEFHGGCGN DISFHIDGALVAPSDYRILGD+ S
Sbjct: 61  RAWAKACTSSESTIVYVPKGRFLVRPIEFHGGCGNNDISFHIDGALVAPSDYRILGDVGS 120

Query: 152 WLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAM 190
           WLSFDGVDGV+LSGGVLDANGAALW+CKSSAAHCPVGAM
Sbjct: 121 WLSFDGVDGVSLSGGVLDANGAALWNCKSSAAHCPVGAM 159

[Close]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL
Match: A0A5D3CTN2 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00440 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.91e-67
Identity = 110/161 (68.32%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAK SNHSS  SPFQP I++L +V  +  TI  S+SA LLNILDFGAIRG   DS+ A  
Sbjct: 1   MAKISNHSSFHSPFQPTIILLALVILISHTIRRSHSANLLNILDFGAIRG--YDSSQAIH 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLR 151
           RAWA AC S ESTIVY+P GRFLV+PIEFHGG C N+DISFHIDGAL+ P DYRILG++ 
Sbjct: 61  RAWAVACKSEESTIVYIPKGRFLVQPIEFHGGGCHNEDISFHIDGALIGPPDYRILGNVE 120

Query: 152 SWLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGAMV 191
           SWLSF  V+GV+L+GGVL ANG ALW CK S  HCPVGA V
Sbjct: 121 SWLSFVEVNGVSLTGGVLYANGEALWSCKFSTTHCPVGARV 159

[Close]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL
Match: A0A1S3B8I8 (polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103487206 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 4.40e-65
Identity = 113/168 (67.26%), Postives = 129/168 (76.79%), Query Frame = 0


Query: 26  IQFHL---PMAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGG 85
           I F+L   PMAK SNHSS  SPFQP I++L +V  +  TI  S+SA LLNILDFGAIRG 
Sbjct: 4   ISFYLLQNPMAKISNHSSFHSPFQPTIILLALVILISHTIRRSHSANLLNILDFGAIRG- 63

Query: 86  GRDSNPAFRRAWAKACMSSESTIVYVPNGRFLVRPIEFHGG-CGNKDISFHIDGALVAPS 145
             DS+ A  RAWA AC S ESTIVY+P GRFLV+PIEFHGG C N+DISFHIDGAL+ P 
Sbjct: 64  -YDSSQAIHRAWAVACKSEESTIVYIPKGRFLVQPIEFHGGGCHNEDISFHIDGALIGPP 123

Query: 146 DYRILGDLRSWLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGA 189
           DYRILG++ SWLSF  V+GV+L+GGVL ANG ALW CK S  HCPVGA
Sbjct: 124 DYRILGNVESWLSFVEVNGVSLTGGVLYANGEALWSCKFSTTHCPVGA 169

[Close]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL
Match: A0A5A7T989 (Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00350 PE=3 SV=1)

HSP 1 Score: 212 bits (539), Expect = 7.20e-64
Identity = 109/159 (68.55%), Postives = 124/159 (77.99%), Query Frame = 0


Query: 32  MAKFSNHSSLPSPFQPFIVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFR 91
           MAK SNHSS  SPFQP I++L +V  +  TI  S+SA LLNILDFGAIRG   DS+ A  
Sbjct: 1   MAKISNHSSFHSPFQPTIILLALVILISHTIRRSHSANLLNILDFGAIRG--YDSSQAIH 60

Query: 92  RAWAKACMSSESTIVYVPNGRFLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLR 151
           RAWA AC S ESTIVY+P GRFLV+PIEFHGG C N+DISFHIDGAL+ P DYRILG++ 
Sbjct: 61  RAWAVACKSEESTIVYIPKGRFLVQPIEFHGGGCHNEDISFHIDGALIGPPDYRILGNVE 120

Query: 152 SWLSFDGVDGVTLSGGVLDANGAALWDCKSSAAHCPVGA 189
           SWLSF  V+GV+L+GGVL ANG ALW CK S  HCPVGA
Sbjct: 121 SWLSFVEVNGVSLTGGVLYANGEALWSCKFSTTHCPVGA 157

[Close]

BLAST of Csor.00g228900 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-32
Identity = 70/147 (47.62%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 53  VIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGR 112
           ++V F+F  I +S SA   N+L FGA   G  D+  AF   W  AC SS    + VP GR
Sbjct: 4   LLVLFVFFFI-SSCSAQSYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGR 63

Query: 113 FLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDAN 172
           FL+R + F G  C  K ++F IDG LVAP+DYR++G+   W+ F  +DG+T+ GGVLDA 
Sbjct: 64  FLLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDAR 123

Query: 173 GAALWDCKSSAAHCPVGAMVPTSNSSS 199
           GA+LWDCK S  +CP GA      SSS
Sbjct: 124 GASLWDCKKSGKNCPSGATTIGFQSSS 149

[Close]

BLAST of Csor.00g228900 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-32
Identity = 67/138 (48.55%), Postives = 86/138 (62.32%), Query Frame = 0


Query: 53  VIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNGR 112
           +++  LFL   +S SA   NIL +GA   G  DS  AF   WAKAC S +   + VP GR
Sbjct: 5   LLIVLLFLLSVSSSSAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTILVPKGR 64

Query: 113 FLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDAN 172
           FL+R I F G  C  K ++F I G LVAPSDYR++G    W+ F  +DG+++ GGVLDA 
Sbjct: 65  FLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDAQ 124

Query: 173 GAALWDCKSSAAHCPVGA 190
           GA+LW CK S  +CP GA
Sbjct: 125 GASLWSCKKSGKNCPSGA 142

[Close]

BLAST of Csor.00g228900 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-29
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 49  IVILVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYV 108
           + +L++ F  FL + +S +A+  N++ FGA   G  DS  AF  AW  AC S+ +  V V
Sbjct: 7   VAVLLMFFSSFLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTV 66

Query: 109 PNGRFLVRPIEFHGGCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVL 168
           P G FL++P+EF G C ++ I+F I G +VAPSDYR LG+   W+ F  V+ +++ GG L
Sbjct: 67  PRGSFLLKPVEFRGPCRSR-ITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTL 126

Query: 169 DANGAALWDCKSSAAHCPVGAMVPTSN 196
           DA GA+ W C+ S   CPVGA   T N
Sbjct: 127 DARGASFWACRKSGKSCPVGARSMTFN 152

[Close]

BLAST of Csor.00g228900 vs. TAIR 10
Match: AT2G43860.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.3e-27
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 52  LVIVFFLFLTITTSYSATLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSESTIVYVPNG 111
           L+I+ F  ++       + LN+L +GA   G +DS  AF  AW  AC S+  T + VP G
Sbjct: 14  LIILDFTLISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKG 73

Query: 112 RFLVRPIEFHGG-CGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGVTLSGGVLDA 171
           RFLV  + FHG  C    IS  I G++VAP D+RI+   + W+ F+ V  V++ GG+LDA
Sbjct: 74  RFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDA 133

Query: 172 NGAALWDCKSSAAH-CPVGA 190
            G +LW CK++  H CP GA
Sbjct: 134 QGTSLWKCKNNGGHNCPTGA 153

[Close]

BLAST of Csor.00g228900 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 9.6e-27
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 45  FQPFIVILVIVFFLFLTITTSYSA-TLLNILDFGAIRGGGRDSNPAFRRAWAKACMSSES 104
           F  F+ +  IV  + ++    + A T LN+L FGA   G  +S  AF  AW  AC   +S
Sbjct: 4   FLSFVQVFSIVITIIMSHFGQFDARTSLNVLSFGANPNGIVESAKAFSDAWDAACGVEDS 63

Query: 105 TIVYVPNGRFLVR-PIEFHG-GCGNKDISFHIDGALVAPSDYRILGDLRSWLSFDGVDGV 164
            ++YVP GR+LV   + F G  C +++I+  IDG L+ P DY +LG   +W SF GV  V
Sbjct: 64  VVIYVPKGRYLVSGEVRFEGESCKSREITLRIDGTLIGPQDYSLLGKKENWFSFSGVHNV 123

Query: 165 TLSGGVLDANGAALWDCKSSAAHCPVGA 190
           T+ GG  DA G+ LW CK++  +CP GA
Sbjct: 124 TVLGGSFDAKGSTLWSCKANGYNCPEGA 151

The following BLAST results are available for this feature:

BLAST of Csor.00g228900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	1.3e-28	43.92	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	6.1e-26	42.14	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
P48978	2.0e-16	37.78	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]
P35336	2.2e-15	41.18	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
Q8RY29	1.3e-12	37.10	Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2	[more]

BLAST of Csor.00g228900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590113.1	1.84e-140	100.00	hypothetical protein SDJN03_15536, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7023779.1	8.80e-116	99.41	hypothetical protein SDJN02_14805, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023515405.1	3.55e-100	94.34	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960566.1	2.87e-99	93.71	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022987940.1	1.88e-97	91.82	polygalacturonase-like [Cucurbita maxima]	[more]

BLAST of Csor.00g228900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7Y9	1.39e-99	93.71	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111461305 PE=3 SV=1	[more]
A0A6J1JI71	9.11e-98	91.82	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111485342 PE=3 SV=1	[more]
A0A5D3CTN2	1.91e-67	68.32	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G0...	[more]
A0A1S3B8I8	4.40e-65	67.26	polygalacturonase OS=Cucumis melo OX=3656 GN=LOC103487206 PE=3 SV=1	[more]
A0A5A7T989	7.20e-64	68.55	Polygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00...	[more]

BLAST of Csor.00g228900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43870.1	2.6e-32	47.62	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	3.4e-32	48.55	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	4.6e-29	43.54	Pectin lyase-like superfamily protein	[more]
AT2G43860.1	4.3e-27	42.14	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	9.6e-27	41.22	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 59..200 e-value: 7.6E-22 score: 79.8
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 98..182 e-value: 8.9E-6 score: 25.0
None	No IPR available	PANTHER	PTHR31375:SF180	POLYGALACTURONASE-LIKE	coord: 50..197
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 50..197
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 52..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g228900.m01	Csor.00g228900.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity