Csor.00g228580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g228580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	Csor_Chr10: 4450544 .. 4453441 (-)
RNA-Seq Expression	Csor.00g228580
Synteny	Csor.00g228580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGGTTTGTTCTGGATGAGTATGTTATGTAGTTATGCTTATGTTTCTTATTGCCCCAAATGGTTTTTCGACCAATTTTCCTTCTCTAGAAGAAAGGGGGTCGCTTTATTTTATTTTGTTTTGAATTGATAGTGGTCAGATCTTTGTGCTAGAAAGGAGCTTAGATAGGGGGAATGGGAATAAGACATCACATAGTTTAAGGAAGTTGAAAAGTTCTATCTGTTTCTGTAACCGCCCAAGCCCACTGCTAGCATATATTGTCCTCTTTGAGTTTTCCCTTTCGGGCATACCTCAAGGTTTTTAAAACGCGTCTGGGAGAGGTTTCCACACCCTTATAAAACACACTCTCTCTCAAAGTATTAGAATTCTACAATAATCATGAAATCTCATATTCCAACAGCTATGAAAGAAACAAAATGAAATGGACCAAATAACTCTTTATAGTTCCTTTCATTGTCTTATAGGAGCCTTCTATTTATTTGTAGCCTACGAAGTGTCTTAAGGCCGCTCCCTTCACTTGCGGCAAGGCACTCACCCCTCAATAAGGCTTGCTGTGTTGTGCCTTGGGTTAATTGACTTGTTTTTCCCGTCGTTTTATGCCCTCCTTTGGAAAGCTATTGTTTTATCTTTCAATAATCTCGTGCAAATGCTCCCATATTTGTAAAAGTTTTTTCAAATGAAATTATGTTCATGATTCTGTTTGATTTTTGTATAAAATTGTGTGTTGTGCACTTTTGCGAACTTAGTTTTTCATAACTTCATTCTTAAGCATTGTAGAGTCGTTGCAGCCAAGCGTGCCTTGCACTTTAAAAACATTGTTCCACCCTAATACATAGTATGTATTCCACCACATTAGGTAGCCTTTTTTTTCCTTAGACAGAAGCCAAGTTATAGTAATTCATTTGATCTTCTTTCATTTTTCTTCTCCCTTGCGGTGCATCCGTGATTCAGTTTTGACCTGCATCCATGAAATGAAATGAGTCTTTCGTGTCTGAATATAAGAATTTAATTTGGTTGCATTCTTGCAGGGTCTTGTTCGGAATTGCAAGTGCTTTGTAGAACTCTGTGTAGTTTGAAATTAGTAATAGATTGATATAGCACCATTCGTGCTCTGATTCCAATTTTTTTAACTGCATATTGTTTTCTTAAAACACATTTACTGCATACTGCTATTCTTTCTTGCTTGCTGATCAAATATATTCAAGATGTTGCTTAAAAAGCAATTTATAGTAAAAATATGATATAACCTGGTGTACCACTTATTAAAATTTATTTTTTGACACAGACCTGAGGACCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGGTGAGCATATCTGAGCTGTATGGTAGGATTTGCAGATTCTTGGGAAGTGTTAATTTTTTCAATTAGAAAAAAATACAATTAAACTTTGTGCATATGGTTTTTAAGTAATTCTGTAAATTTTATACAACGTTTTTAGTCTCTGTGATATAATATATTTAGTGGTATCGGAGTGAACATGTTTTCAATGATTTCCTTGCTTTCGAACAAAATGGTTTTAGCACAATCCTTGAGAAACGTTTTTAGTCTCTATTGTGTTTCATCTTTCAAATTGTGCATCTGATGATAGAGGCATTTCATTCTGGTTCTTTTGCTTTTTTGTTTTGTTTTTCCTTAAATCACATATTAGGTCTGTTTATTGAACGTTTGAAGATTTAACAGTGAAAAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAGTACATAGAAGATGTTCCCAAGTCTTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCCAGCCAAGTGCTTGCTTATATTCCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTCTAGCAGGCCAAGTTCCTGACCTGATTCTGTGGCTTTACATTAACTTTTCTTTTATAACTTTCCCCTTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGTGGCTTCGGTTTCGTTCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGGTATGAAGCTGGCCTTGTATCATTTGTTTACAGTTCAGTATAGCATTTGTTAAACAAAATTAATATTTCAGTTTTATAAACAGTGGACGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCACGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCACCACCAAAACCAAGAGCTTACTCAAGGTATTCTTTCAATACATTGCTCGTTACTTCCTAGTTCTTTATTCAGTCTAATGTCTCTCAATATATTGCTGCTTGAGCCACAATTTTTTCTATATGTCAATGCAGATCGGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGA

mRNA sequence

ATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGACCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGTTTCGTTCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGTGGACGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCACGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCACCACCAAAACCAAGAGCTTACTCAAGATCGGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGA

Coding sequence (CDS)

ATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGACCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGTTTCGTTCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGTGGACGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCACGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCACCACCAAAACCAAGAGCTTACTCAAGATCGGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGA

Protein sequence

MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSPLRG

Homology

[Close]

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.0e-76
Identity = 170/252 (67.46%), Postives = 187/252 (74.21%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
            +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVV+AEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           +MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPR-----YYSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG--- 240
           PP+ R + RS SP + R    RS+ R P    SRGRS   +P    SRS SPSP R    
Sbjct: 181 PPR-RHHPRSISPREERYDGRRSYSRSPASDGSRGRSL--TPVRGKSRSLSPSPRRSISR 235

Query: 241 ---RSRSPSPLR 243
              RSRSPSP R
Sbjct: 241 SPRRSRSPSPKR 235

[Close]

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.5e-74
Identity = 164/245 (66.94%), Postives = 184/245 (75.10%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLR DCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP 120
           G +KDIYLP+DY+TG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVV+AEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDN 180
           ++MRTR+RG  S RF DRRRSP      PRYSRSP PR  R S        RSRSR Y++
Sbjct: 121 TEMRTRDRGGRSNRFQDRRRSP------PRYSRSPPPRRGRRS--------RSRSRGYNS 180

Query: 181 ASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRS 240
              PP  R  SRS SP DRR  +E          RS+SRSP  +GSR RS SP R +S S
Sbjct: 181 ---PPAKRHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHS 218

Query: 241 PSPLR 243
            SP R
Sbjct: 241 RSPRR 218

[Close]

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 112/273 (41.03%), Postives = 146/273 (53.48%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPE 63
           R Y+P   SPP RGYG RGRSP P          G  GGR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 123
           +LR PF +FG ++D+Y+P+DY++G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 YAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHAR 183
            A E+RK+P +MR + R       R R P  S  RS   SRS +   +R  R P+   +R
Sbjct: 122 VASESRKRPEEMRVKTR------TRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 181

Query: 184 SRSRSYDNASPPPKPRA----------YSR----------SASPPDRRNSRERSFPRQPS 241
            RSRSY   SP P+ R           YSR          +A+ PDR  + +     +P 
Sbjct: 182 YRSRSY---SPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKP- 241

[Close]

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-28
Identity = 113/244 (46.31%), Postives = 142/244 (58.20%), Query Frame = 0


Query: 2   RGRSYTPSPPRGYGRRGRSPSPRGRYG---GRGRDLPTS----------LLVRNLRRDCR 61
           R RSY+P P      R RSP PR R G    R R+ P+S          LL+RNL  D R
Sbjct: 7   RSRSYSPRP------RDRSP-PRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDAR 66

Query: 62  PEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELT 121
           P DLR  F +FG +KDIYLP++Y+TGEPRGFGFV+Y    DAA+A  +M+  V+ GRE+ 
Sbjct: 67  PNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIA 126

Query: 122 VVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHA 181
           +V+AEENRK P +MRT    SGR  D +R+  RS R  R  RS    H+R SRSP  R +
Sbjct: 127 IVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPR--RRYRS----HSR-SRSPPRRES 186

Query: 182 R-SRSRSYDNASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFS--RSPRLDGSRS 230
           R S+ R  D  SP  + R+ SRS  P + R  + R+  R P   R  +  RS  L  SRS
Sbjct: 187 RHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNC-RSPREERVLTPIRSRCLSRSRS 235

[Close]

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-22
Identity = 89/220 (40.45%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 36  TSLLVRNLRRDCRPEDLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKH 95
           TSL VRN+  D R EDLRR FG++G I D+Y+P D++T  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 96  QMDGCVLLGRELTVVYAEENRKKPSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPR 155
            +D   + GR++ + +A+ +RK P+ M+ +E          R+   SSR   Y R     
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKE---------GRNVYSSSRYDDYDR----- 129

Query: 156 HARYSRSPAPRHARSRSRSYD----------NASPPPKPRAYSRSASPPDRRNSRERSFP 215
             R SRS +    RSRSRS+D          N+ P  +PR  SRS S  DR   R RSF 
Sbjct: 130 -YRRSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRR-SRSHSDNDRFKHRNRSFS 189

Query: 216 RQPSRGRSFSRS-PRLD-----GSRSRSPSPARGRSRSPS 240
           R  S  RS S+S P+ +      SRS S +  RG S++ S
Sbjct: 190 RSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDS 213

[Close]

BLAST of Csor.00g228580 vs. NCBI nr
Match: XP_022961137.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata] >KAG6590145.1 Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 469 bits (1206), Expect = 2.55e-166
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP
Sbjct: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240
           PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP
Sbjct: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240

Query: 241 LRG 243
           LRG
Sbjct: 241 LRG 243

[Close]

BLAST of Csor.00g228580 vs. NCBI nr
Match: XP_023516498.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo] >XP_023516500.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464 bits (1194), Expect = 1.78e-164
Identity = 243/244 (99.59%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGG RGRDLPTSLLVRNLRRDCRPEDLRRPFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQF 60

Query: 61  GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP 120
           GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP
Sbjct: 61  GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP 120

Query: 121 SDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNAS 180
           SDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNAS
Sbjct: 121 SDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNAS 180

Query: 181 PPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPS 240
           PPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPS
Sbjct: 181 PPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPS 240

Query: 241 PLRG 243
           PLRG
Sbjct: 241 PLRG 244

[Close]

BLAST of Csor.00g228580 vs. NCBI nr
Match: XP_022988199.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxima])

HSP 1 Score: 463 bits (1192), Expect = 3.47e-164
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP
Sbjct: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240
           PPKPR YSRSASPPDRRNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP
Sbjct: 181 PPKPRTYSRSASPPDRRNSRERSFPRQLSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240

Query: 241 LRG 243
           LRG
Sbjct: 241 LRG 243

[Close]

BLAST of Csor.00g228580 vs. NCBI nr
Match: XP_022961135.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata] >XP_022961136.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata])

HSP 1 Score: 463 bits (1191), Expect = 5.70e-164
Identity = 243/247 (98.38%), Postives = 243/247 (98.38%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGS----GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180
           DMRTRERGS    GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRTRERGSSINSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180

Query: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240
           NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR
Sbjct: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240

Query: 241 SPSPLRG 243
           SPSPLRG
Sbjct: 241 SPSPLRG 247

[Close]

BLAST of Csor.00g228580 vs. NCBI nr
Match: XP_022988197.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxima] >XP_022988198.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxima])

HSP 1 Score: 457 bits (1177), Expect = 7.76e-162
Identity = 241/247 (97.57%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGS----GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180
           DMRTRERGS    GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRTRERGSFMNSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180

Query: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240
           NASPPPKPR YSRSASPPDRRNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSR
Sbjct: 181 NASPPPKPRTYSRSASPPDRRNSRERSFPRQLSRGRSFSRSPRLDGSRSRSPSPARGRSR 240

Query: 241 SPSPLRG 243
           SPSPLRG
Sbjct: 241 SPSPLRG 247

[Close]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL
Match: A0A6J1H9C6 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461738 PE=4 SV=1)

HSP 1 Score: 469 bits (1206), Expect = 1.23e-166
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP
Sbjct: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240
           PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP
Sbjct: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240

Query: 241 LRG 243
           LRG
Sbjct: 241 LRG 243

[Close]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL
Match: A0A6J1JKW9 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485508 PE=4 SV=1)

HSP 1 Score: 463 bits (1192), Expect = 1.68e-164
Identity = 241/243 (99.18%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP
Sbjct: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240
           PPKPR YSRSASPPDRRNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP
Sbjct: 181 PPKPRTYSRSASPPDRRNSRERSFPRQLSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240

Query: 241 LRG 243
           LRG
Sbjct: 241 LRG 243

[Close]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL
Match: A0A6J1HB72 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461738 PE=4 SV=1)

HSP 1 Score: 463 bits (1191), Expect = 2.76e-164
Identity = 243/247 (98.38%), Postives = 243/247 (98.38%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGS----GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180
           DMRTRERGS    GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRTRERGSSINSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180

Query: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240
           NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR
Sbjct: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240

Query: 241 SPSPLRG 243
           SPSPLRG
Sbjct: 241 SPSPLRG 247

[Close]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL
Match: A0A6J1JLK2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485508 PE=4 SV=1)

HSP 1 Score: 457 bits (1177), Expect = 3.76e-162
Identity = 241/247 (97.57%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
           AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS
Sbjct: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120

Query: 121 DMRTRERGS----GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180
           DMRTRERGS    GRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD
Sbjct: 121 DMRTRERGSFMNSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD 180

Query: 181 NASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSR 240
           NASPPPKPR YSRSASPPDRRNSRERSFPRQ SRGRSFSRSPRLDGSRSRSPSPARGRSR
Sbjct: 181 NASPPPKPRTYSRSASPPDRRNSRERSFPRQLSRGRSFSRSPRLDGSRSRSPSPARGRSR 240

Query: 241 SPSPLRG 243
           SPSPLRG
Sbjct: 241 SPSPLRG 247

[Close]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 414 bits (1064), Expect = 2.03e-144
Identity = 221/245 (90.20%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRD--LPTSLLVRNLRRDCRPEDLRRPFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRD  LPTSLLVRNLR DCRPEDLRR FGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKK 120
           FGAIKDIYLPKDY+TGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV+AEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNA 180
           PSDMR RERGSGRF+DRRRSPPR SRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYD  
Sbjct: 121 PSDMRARERGSGRFHDRRRSPPRYSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDYT 180

Query: 181 SPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSP 240
           SPPPK RA SRS SP DRR+SRERS+PRQPSRGRS+S+SPRL+GSRSRS SPARG SRS 
Sbjct: 181 SPPPKQRACSRSVSPRDRRDSRERSYPRQPSRGRSYSQSPRLNGSRSRSQSPARGGSRSQ 240

Query: 241 SPLRG 243
           SP RG
Sbjct: 241 SPARG 245

[Close]

BLAST of Csor.00g228580 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-77
Identity = 164/240 (68.33%), Postives = 182/240 (75.83%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
            +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVV+AEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           +MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPR-----YYSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRSPSP 240
           PP+ R + RS SP + R              RS+SRSP  DGSR RS +P RG+SRS SP
Sbjct: 181 PPR-RHHPRSISPREERYDGR----------RSYSRSPASDGSRGRSLTPVRGKSRSLSP 215

[Close]

BLAST of Csor.00g228580 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 285.4 bits (729), Expect = 4.2e-77
Identity = 170/252 (67.46%), Postives = 187/252 (74.21%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKPS 120
            +KDIYLP+DY+TG+PRGFGFVQ++DPADAADAKH MDG +LLGRELTVV+AEENRKKP+
Sbjct: 61  PVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120

Query: 121 DMRTRERGSGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDNASP 180
           +MR RERG GRF DRRR+PPR      YSR         SRSP PR  RSRSRS D  SP
Sbjct: 121 EMRARERGGGRFRDRRRTPPR-----YYSR---------SRSPPPRRGRSRSRSGDYYSP 180

Query: 181 PPKPRAYSRSASPPDRRNSRERSFPRQP----SRGRSFSRSPRLDGSRSRSPSPARG--- 240
           PP+ R + RS SP + R    RS+ R P    SRGRS   +P    SRS SPSP R    
Sbjct: 181 PPR-RHHPRSISPREERYDGRRSYSRSPASDGSRGRSL--TPVRGKSRSLSPSPRRSISR 235

Query: 241 ---RSRSPSPLR 243
              RSRSPSP R
Sbjct: 241 SPRRSRSPSPKR 235

[Close]

BLAST of Csor.00g228580 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 278.1 bits (710), Expect = 6.8e-75
Identity = 164/245 (66.94%), Postives = 184/245 (75.10%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-RGRDLPTSLLVRNLRRDCRPEDLRRPFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLR DCR EDLRRPF QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP 120
           G +KDIYLP+DY+TG+PRGFGF+Q++DPADAA+AKHQMDG +LLGRELTVV+AEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRTRERG--SGRFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRHARSRSRSYDN 180
           ++MRTR+RG  S RF DRRRSP      PRYSRSP PR  R S        RSRSR Y++
Sbjct: 121 TEMRTRDRGGRSNRFQDRRRSP------PRYSRSPPPRRGRRS--------RSRSRGYNS 180

Query: 181 ASPPPKPRAYSRSASPPDRRNSRERSFPRQPSRGRSFSRSPRLDGSRSRSPSPARGRSRS 240
              PP  R  SRS SP DRR  +E          RS+SRSP  +GSR RS SP R +S S
Sbjct: 181 ---PPAKRHQSRSVSPQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHS 218

Query: 241 PSPLR 243
            SP R
Sbjct: 241 RSPRR 218

[Close]

BLAST of Csor.00g228580 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 271.9 bits (694), Expect = 4.8e-73
Identity = 170/265 (64.15%), Postives = 187/265 (70.57%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQFG 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGR RDLPTSLLVRNLR DCR EDLR+ F QFG
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFG 60

Query: 61  AIKDIYLPKDYHTG------------EPRGFGFVQYVDPADAADAKHQMDGCVLLGRELT 120
            +KDIYLP+DY+TG            +PRGFGFVQ++DPADAADAKH MDG +LLGRELT
Sbjct: 61  PVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELT 120

Query: 121 VVYAEENRKKPSDMRTRERGSG-RFYDRRRSPPRSSRSPRYSRSPAPRHARYSRSPAPRH 180
           VV+AEENRKKP++MR RERG G RF DRRR+PPR      YSR         SRSP PR 
Sbjct: 121 VVFAEENRKKPTEMRARERGGGSRFRDRRRTPPR-----YYSR---------SRSPPPRR 180

Query: 181 ARSRSRSYDNASPPPKPRAYSRSASPPDRRNSRERSFPRQP----SRGRSFSRSPRLDGS 240
            RSRSRS D  SPPP+ R + RS SP + R    RS+ R P    SRGRS   +P    S
Sbjct: 181 GRSRSRSGDYYSPPPR-RHHPRSISPREERYDGRRSYSRSPASDGSRGRSL--TPVRGKS 240

Query: 241 RSRSPSPARG------RSRSPSPLR 243
           RS SPSP R       RSRSPSP R
Sbjct: 241 RSLSPSPRRSISRSPRRSRSPSPKR 248

[Close]

BLAST of Csor.00g228580 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 131.7 bits (330), Expect = 7.8e-31
Identity = 112/273 (41.03%), Postives = 146/273 (53.48%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP---------RGRYGGRGRDLPTSLLVRNLRRDCRPE 63
           R Y+P   SPP RGYG RGRSP P          G  GGR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRPFGQFGAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVV 123
           +LR PF +FG ++D+Y+P+DY++G+PRGF FV++VD  DA +A+  M+     GRE+TVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 YAEENRKKPSDMRTRERGSGRFYDRRRSPPRS-SRSPRYSRSPAPRHARYSRSPAPRHAR 183
            A E+RK+P +MR + R       R R P  S  RS   SRS +   +R  R P+   +R
Sbjct: 122 VASESRKRPEEMRVKTR------TRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 181

Query: 184 SRSRSYDNASPPPKPRA----------YSR----------SASPPDRRNSRERSFPRQPS 241
            RSRSY   SP P+ R           YSR          +A+ PDR  + +     +P 
Sbjct: 182 YRSRSY---SPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIREKP- 241

The following BLAST results are available for this feature:

BLAST of Csor.00g228580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	6.0e-76	67.46	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	9.5e-74	66.94	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	1.1e-29	41.03	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	1.6e-28	46.31	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	5.0e-22	40.45	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Csor.00g228580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961137.1	2.55e-166	100.00	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita mosch...	[more]
XP_023516498.1	1.78e-164	99.59	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pep...	[more]
XP_022988199.1	3.47e-164	99.18	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita maxim...	[more]
XP_022961135.1	5.70e-164	98.38	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita mosch...	[more]
XP_022988197.1	7.76e-162	97.57	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita maxim...	[more]

BLAST of Csor.00g228580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9C6	1.23e-166	100.00	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos...	[more]
A0A6J1JKW9	1.68e-164	99.18	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max...	[more]
A0A6J1HB72	2.76e-164	98.38	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1JLK2	3.76e-162	97.57	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita max...	[more]
A0A6J1DIJ4	2.03e-144	90.20	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch...	[more]

BLAST of Csor.00g228580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.2	2.5e-77	68.33	SC35-like splicing factor 33	[more]
AT1G55310.1	4.2e-77	67.46	SC35-like splicing factor 33	[more]
AT3G13570.1	6.8e-75	66.94	SC35-like splicing factor 30A	[more]
AT1G55310.3	4.8e-73	64.15	SC35-like splicing factor 33	[more]
AT3G55460.1	7.8e-31	41.03	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 4.4E-20 score: 82.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..107 e-value: 1.2E-18 score: 66.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 17.080015
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 30..146 e-value: 2.4E-26 score: 94.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..141
None	No IPR available	PANTHER	PTHR23147:SF155	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 1..157
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..157
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g228580.m01	Csor.00g228580.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding