Csor.00g228400 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g228400
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	zinc finger CCHC domain-containing protein 7-like isoform X4
Location	Csor_Chr08: 3866189 .. 3869048 (-)
RNA-Seq Expression	Csor.00g228400
Synteny	Csor.00g228400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinternalintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGGACATACTGGTCTGGTAAGTCCTCTATGCTCATATGTCATATCTGACTGGTACGATGTTCACATGATACTCGTATCACCTTTTGTTTTTCCATTTAAGACTTTCTCTTGTTTTGTTTACATATTACTTTTGTTGTGTTATATATATATATATAAAAAAAAAAAAGTTTGTCTTGCTTTGTATATGCAATTGCCCACTTGTTTTTTGCTCTCACGCTGGCTGGCAGTAATAAGCAGCAAATCTTGGCGGCAGTTCTGAATTTTTCCGATTTTTGAGCATTGACAAATTTCTAGATTGTTTGGGCTTACGTATGACTGTATTTTCTTGCGCAAGTTCAAATAATTGGGATTAATGAGTTGCTAATGTATGCTTTGTAATTAAAGAGTTCATTGTTTAGTGAGTCAACATGTGAGAAAGTAGGAGAGGGGGGCCAATATTGGCAGGGTCTATAGTGTTGCTTTCACTTATTATTTGTTGTATGTCTCAGTACACGCGAGCAAAGAATATTTTAAATACAGGAACTTTGTAGTCACTTTGAACAACCAGACAGAAGATCTGCCCGGTCACCAACGCCTCATTCCTTTTAAATTGAAGTTCCTTGCTTCTATGTTTATTGCACATGGTTGATTAATCTTTTGGGCTGTGTGTATGTGAATCTACAGGCATGCTCGAGATTACGTGGGGGAAGCCTCTGCTGCTGTATCAGCCAGCTCATGCTACAGATGTGGTGAAGAAGGGCATTTTGCCCGTGAGTGTACAAGTTCCGCCAAGGTAGATAAAAAAAACTTACATATTGGCTTATATTTTTCAACAAATATAAGGAGAATATTTATTTTGATAGCCATTTGGTCTTTGGTTATGATTTATTAATCTTATAATTAGTACGTGCACTTGTGAGGTTTTTTGTTTTGTTGTCTATGTTTTATATATGTTTTTCAAAAAATCAAGCCTAAGCTTTGAAAACTTAAAAAAGTAGTTTCACAAACTTATTTTTGTTTTGGAATTTGACTAAGAATTCAAAGGATTTCTTTAGGAAGATGAAACCCATTATAGAGAAATGGTGATAAAACAAGCATAATTTAAAAAAAAAAAAAACCAAGGACTAAGGCCTTGTTTGACAACCATTTAGCTTTTGGTTTTTGGCATTTGAAAATTGAGCTTATAAATACTATTCCCATTTATGGGATTTGTTGATATGTTTTTAAGAATCCAGCCAATGTTTGAAAACTTAACAGTTTTCAAAAAATTGTATTTTTGTAGTATTTGGATAATTAAAGTAAGAAAGATTAAATCCATTGTAGAGAAATGACAAGATAATAAGCACAAGCGCAATTTTAAAAATCCAGAGACAAAAAAATAAAGGTTTTTATAAACAGTGTCTATACTGAATTTATACTTCATGGCGCTTGCTCAGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTTGCATCACCTAGCCATGCTATAGATGTGGTGAAGAAAGGGCATTTTGCCCGTGAATGCACTAGTTCCGCCAAGGTAGACAAAAAGCAGGGCCTTTTGTCCCGTGAGTGCACAATTTCTGCCAAGGTAGATAAATAAAGCTTACATATCGGTTTTTTTGATTTTTGGTTTTTGGTTTCTGATAATTAAAGCTTATAAATAGTACCTTTATGAGTTTTTTTTTTGTTTTGTTGGTCCCAACTTTTCACATATGTTTTTAAAAAACCAAGCCTAAGTTTTTAAAACTAAAAAAATAGTTTTTAAAAACTTATTTCTTGGAATGTGACTAAGAATTCAAACAATTTCTCAAGAAAGATAAAGCCCCTTGATAGAGAAATGATGTAAAATCAAGCACAATTTTCAAAAACCAAAAACAAAAGTCCCATTCATAACCATTTAGTTTTTGGTTTTTTGTGTTTGAAACTTGAGCCTATAAATACTACTTCCATTCATGGGGTTTGGTTGTTTACTTTTTATGTGTTTTTAAAAAATCAAGTCAACTTTTAAAAACATAATACAATAGTTTTCAAAAACTTTGTTAGAATTTGAAAACTTAAAACAGTAGTTTTAAAGAACTGTTGAAGCTTTAATACTATAGTAACAAAGATGAAATCCATTGTAGAGAGATGATAAGAAAACAAGCCCAAATTAACAAATCAGAAATAATAAATTAAATGATTATCGAACAGTTTCATATACTGAATTTATACTTTATGGAGCGTGCCCAGGGCGGGAAGAAGAATCGGGAGGATGCCTCCGGTGCTGCATCACCCAACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGGAGTGCCCAAGTTCCACCAAGGTAGATAAAAAAAAACCCTATACATCGCCTGTTTTATTAGGGAAAAGTTATGAGGAGAGAAATGTTCAGTTTGATACATTTACTTATATTTCCTTTCAAATGTGATTTTAAAACTTGTACTTTATGGAACTTGCTCAGGGTAGCAAGAGGAATATTGAAGTAGCTTCTGGCACTGAGTCAACTAACTCATGCTATAGATGTGGTGGAGAAGGGCATTTTTTGCCCGAGAGTGCACAAGTTCCACCAGGTAAATAAAAGATCCTACATTTTGGCATGTTTTATCAGATGAAGATTAGGAGTTCTTTTTGTTATGCATACTTATATATCTTGTGAGAATGTGGATTCTAACATTTTATTTCATGGAGCTTTCACAGGGTGGCAAGAGGAATCGTGAGTTATCGAACCATAAATCGAGGTCAAAAACAGAAGAAACGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGACGAAAAATACACTAACCCTGCCTAG

mRNA sequence

GCTGGACATACTGGTCTGGTAAGTCCTCTATGCTCATATGTCATATCTGACTGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTTGCATCACCTAGCCATGCTATAGATGTGGTGAAGAAAGGGCATTTTGCCCGTGAATGCACTAGTTCCGCCAAGGTAGACAAAAAGCAGGGCCTTTTGTCCCGTGAGTGCACAATTTCTGCCAAGGGCGGGAAGAAGAATCGGGAGGATGCCTCCGGTGCTGCATCACCCAACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGGAGTGCCCAAGTTCCACCAAGATGTGGTGGAGAAGGGCATTTTTTGCCCGAGAGTGCACAAGTTCCACCAGGGTGGCAAGAGGAATCGTGAGTTATCGAACCATAAATCGAGGTCAAAAACAGAAGAAACGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGACGAAAAATACACTAACCCTGCCTAG

Coding sequence (CDS)

GCTGGACATACTGGTCTGGTAAGTCCTCTATGCTCATATGTCATATCTGACTGGGTGGCAAGAAGAATCGTGAGGAAGCCTCTGGTGCTTGCATCACCTAGCCATGCTATAGATGTGGTGAAGAAAGGGCATTTTGCCCGTGAATGCACTAGTTCCGCCAAGGTAGACAAAAAGCAGGGCCTTTTGTCCCGTGAGTGCACAATTTCTGCCAAGGGCGGGAAGAAGAATCGGGAGGATGCCTCCGGTGCTGCATCACCCAACCCATGCTATAGATGTGGTGAAGATGGGCATTTTTCCCGTGGAGTGCCCAAGTTCCACCAAGATGTGGTGGAGAAGGGCATTTTTTGCCCGAGAGTGCACAAGTTCCACCAGGGTGGCAAGAGGAATCGTGAGTTATCGAACCATAAATCGAGGTCAAAAACAGAAGAAACGTACCATATGGGGTCAAAATCTGCACCTCATAATCTTGCAAAGGCTCATAGCAAGAAGAAAAAGATAAACTATGACGAAAAATACACTAACCCTGCCTAG

Protein sequence

AGHTGLVSPLCSYVISDWVARRIVRKPLVLASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVHKFHQGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNPA

Homology

[Close]

BLAST of Csor.00g228400 vs. ExPASy Swiss-Prot
Match: Q04832 (DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-05
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 41  KKGHFAREC-TSSAKVDKK---------QGLLSRECTISAKGGKKNREDASGAASPNPCY 100
           K+GH+AREC  + +K D++         +G +SREC   A+         SGAA    C+
Sbjct: 23  KEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEAR---------SGAAGAMTCF 82

Query: 101 RCGEDGHFSRGVPKFHQDVVEKGIFCPRVHKFHQGGKRNRELSNHKSRSK 141
           RCGE GH SR  P   +    KG  C   +K  Q G  +R+  + +  S+
Sbjct: 83  RCGEAGHMSRDCPNSAKPGAAKGFEC---YKCGQEGHLSRDCPSSQGGSR 120

[Close]

BLAST of Csor.00g228400 vs. NCBI nr
Match: KAG6593423.1 (hypothetical protein SDJN03_12899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360 bits (923), Expect = 2.12e-125
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   AGHTGLVSPLCSYVISDWVARRIVRKPLVLASPSHAIDVVKKGHFARECTSSAKVDKKQG 60
           AGHTGLVSPLCSYVISDWVARRIVRKPLVLASPSHAIDVVKKGHFARECTSSAKVDKKQG
Sbjct: 1   AGHTGLVSPLCSYVISDWVARRIVRKPLVLASPSHAIDVVKKGHFARECTSSAKVDKKQG 60

Query: 61  LLSRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVH 120
           LLSRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVH
Sbjct: 61  LLSRECTISAKGGKKNREDASGAASPNPCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVH 120

Query: 121 KFHQGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNPA 176
           KFHQGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNPA
Sbjct: 121 KFHQGGKRNRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTNPA 176

[Close]

BLAST of Csor.00g228400 vs. NCBI nr
Match: XP_022933990.1 (uncharacterized protein LOC111441232 isoform X3 [Cucurbita moschata])

HSP 1 Score: 205 bits (522), Expect = 4.99e-59
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCY 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAKGGKKNREDASGAASPNPCY
Sbjct: 392 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCY 451

Query: 91  RCGEDGHFSRGVPKFHQ------DVVE-------------KGIFCPRVHKFHQGGKRNRE 150
           RCGEDGHFSR  P F +      +V               +G F        +GGKRNRE
Sbjct: 452 RCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRE 511

Query: 151 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 512 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 554

[Close]

BLAST of Csor.00g228400 vs. NCBI nr
Match: KAG7021663.1 (Cold shock protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (517), Expect = 5.45e-59
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCY 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAKGGKKNREDASGAASPNPCY
Sbjct: 296 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCY 355

Query: 91  RCGEDGHFSRGVP------KFHQDVVE-------------KGIFCPRVHKFHQGGKRNRE 150
           RCGEDGHFSR  P      K + +V               +G F        +GGKRNRE
Sbjct: 356 RCGEDGHFSRECPSSTKGSKRNIEVASGTESTNSCYRCGGEGHFARECTSSTKGGKRNRE 415

Query: 151 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 416 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 458

[Close]

BLAST of Csor.00g228400 vs. NCBI nr
Match: KAG6587697.1 (DNA-binding protein HEXBP, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (517), Expect = 2.53e-58
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCY 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAKGGKKNREDASGAASPNPCY
Sbjct: 389 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCY 448

Query: 91  RCGEDGHFSRGVP------KFHQDVVE-------------KGIFCPRVHKFHQGGKRNRE 150
           RCGEDGHFSR  P      K + +V               +G F        +GGKRNRE
Sbjct: 449 RCGEDGHFSRECPSSTKGSKRNIEVASGTESTNSCYRCGGEGHFARECTSSTKGGKRNRE 508

Query: 151 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 509 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 551

[Close]

BLAST of Csor.00g228400 vs. NCBI nr
Match: XP_022933991.1 (zinc finger CCHC domain-containing protein 7-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 201 bits (512), Expect = 8.55e-58
Identity = 110/147 (74.83%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAK---GGKKNREDASGAASPN 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAK   GGKKNREDASGAASPN
Sbjct: 392 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKRAQGGKKNREDASGAASPN 451

Query: 91  PCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVHKFHQGGKRNRELSNHKSRSKTEETYHM 150
           PCYRCGEDGHFSR  P F +                 GGKRNRELSNHKSRSKTEETYHM
Sbjct: 452 PCYRCGEDGHFSRECPSFTK-----------------GGKRNRELSNHKSRSKTEETYHM 511

Query: 151 GSKSAPHNLAKAHSKKKKINYDEKYTN 174
           GSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 512 GSKSAPHNLAKAHSKKKKINYDEKYTN 521

[Close]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL
Match: A0A6J1F6D8 (uncharacterized protein LOC111441232 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441232 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 2.42e-59
Identity = 113/163 (69.33%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCY 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAKGGKKNREDASGAASPNPCY
Sbjct: 392 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCY 451

Query: 91  RCGEDGHFSRGVPKFHQ------DVVE-------------KGIFCPRVHKFHQGGKRNRE 150
           RCGEDGHFSR  P F +      +V               +G F        +GGKRNRE
Sbjct: 452 RCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKRNRE 511

Query: 151 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 512 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 554

[Close]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL
Match: A0A6J1F0K3 (zinc finger CCHC domain-containing protein 7-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111441232 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 4.14e-58
Identity = 110/147 (74.83%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAK---GGKKNREDASGAASPN 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAK   GGKKNREDASGAASPN
Sbjct: 392 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKRAQGGKKNREDASGAASPN 451

Query: 91  PCYRCGEDGHFSRGVPKFHQDVVEKGIFCPRVHKFHQGGKRNRELSNHKSRSKTEETYHM 150
           PCYRCGEDGHFSR  P F +                 GGKRNRELSNHKSRSKTEETYHM
Sbjct: 452 PCYRCGEDGHFSRECPSFTK-----------------GGKRNRELSNHKSRSKTEETYHM 511

Query: 151 GSKSAPHNLAKAHSKKKKINYDEKYTN 174
           GSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 512 GSKSAPHNLAKAHSKKKKINYDEKYTN 521

[Close]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL
Match: A0A6J1F1A8 (uncharacterized protein LOC111441232 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441232 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 2.57e-57
Identity = 113/166 (68.07%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAK---GGKKNREDASGAASPN 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAK   GGKKNREDASGAASPN
Sbjct: 389 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKRAQGGKKNREDASGAASPN 448

Query: 91  PCYRCGEDGHFSRGVPKFHQ------DVVE-------------KGIFCPRVHKFHQGGKR 150
           PCYRCGEDGHFSR  P F +      +V               +G F        +GGKR
Sbjct: 449 PCYRCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKR 508

Query: 151 NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 509 NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 554

[Close]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL
Match: A0A6J1F6E2 (uncharacterized protein LOC111441232 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441232 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 2.68e-57
Identity = 113/166 (68.07%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAK---GGKKNREDASGAASPN 90
           ASPS      ++GHFARECTSSAKVDKK G   RECTISAK   GGKKNREDASGAASPN
Sbjct: 392 ASPSPCYRCGEEGHFARECTSSAKVDKKAGPFVRECTISAKRAQGGKKNREDASGAASPN 451

Query: 91  PCYRCGEDGHFSRGVPKFHQ------DVVE-------------KGIFCPRVHKFHQGGKR 150
           PCYRCGEDGHFSR  P F +      +V               +G F        +GGKR
Sbjct: 452 PCYRCGEDGHFSRECPSFTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGGKR 511

Query: 151 NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN
Sbjct: 512 NRELSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 557

[Close]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL
Match: A0A6J1IF09 (zinc finger CCHC domain-containing protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472161 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 1.44e-49
Identity = 104/163 (63.80%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 31  ASPSHAIDVVKKGHFARECTSSAKVDKKQGLLSRECTISAKGGKKNREDASGAASPNPCY 90
           ASPS      ++GHFAREC SSAKVDKK G   RECTISAKGGKKNREDASGAASPNPCY
Sbjct: 391 ASPSPCYRCGEEGHFARECISSAKVDKKAGPFVRECTISAKGGKKNREDASGAASPNPCY 450

Query: 91  RCGEDGHFSRGVP------KFHQDVVE-------------KGIFCPRVHKFHQGGKRNRE 150
           RCGEDGHFSR  P      K + +V               +G F        +G K+ R+
Sbjct: 451 RCGEDGHFSRECPSSTKGSKRNIEVASGAESTNSCYRCGGEGHFARECTSSTKGCKKKRD 510

Query: 151 LSNHKSRSKTEETYHMGSKSAPHNLAKAHSKKKKINYDEKYTN 174
           LSN KSRSKTE  YHMGSKSAPHNLAKAHSKKKKINY+EKYTN
Sbjct: 511 LSNPKSRSKTE-MYHMGSKSAPHNLAKAHSKKKKINYEEKYTN 552

[Close]

BLAST of Csor.00g228400 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.9e-04
Identity = 26/74 (35.14%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 41  KKGHFARECT----------SSAKVD----KKQGLLSRECTISAKGGKKNREDASGAASP 100
           K+GH+AR+CT          +SA  D     K G  SR+CT  +   K        ++S 
Sbjct: 244 KEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSS 303

The following BLAST results are available for this feature:

BLAST of Csor.00g228400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04832	2.3e-05	33.64	DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1	[more]

BLAST of Csor.00g228400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593423.1	2.12e-125	100.00	hypothetical protein SDJN03_12899, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022933990.1	4.99e-59	69.33	uncharacterized protein LOC111441232 isoform X3 [Cucurbita moschata]	[more]
KAG7021663.1	5.45e-59	69.33	Cold shock protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587697.1	2.53e-58	69.33	DNA-binding protein HEXBP, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933991.1	8.55e-58	74.83	zinc finger CCHC domain-containing protein 7-like isoform X4 [Cucurbita moschata...	[more]

BLAST of Csor.00g228400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6D8	2.42e-59	69.33	uncharacterized protein LOC111441232 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F0K3	4.14e-58	74.83	zinc finger CCHC domain-containing protein 7-like isoform X4 OS=Cucurbita moscha...	[more]
A0A6J1F1A8	2.57e-57	68.07	uncharacterized protein LOC111441232 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1F6E2	2.68e-57	68.07	uncharacterized protein LOC111441232 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IF09	1.44e-49	63.80	zinc finger CCHC domain-containing protein 7-like isoform X2 OS=Cucurbita maxima...	[more]

BLAST of Csor.00g228400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42860.1	5.9e-04	35.14	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 88..100 e-value: 1.7E-4 score: 21.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 89..104 score: 8.680233
None	No IPR available	GENE3D	4.10.60.10		coord: 40..112 e-value: 1.3E-6 score: 30.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..176
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 72..172
None	No IPR available	PANTHER	PTHR46978	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 72..172
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 69..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g228400.m01	Csor.00g228400.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding