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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGATATTACTCGGCGACGACTATATTCAGGCGGCTTTGGACTCGAGCGGATCTGCAACGAGCGGTCCAGCCACGCCTGACGCGCCCGGCGACCAGCGTGGTTTCCAGCGGCTGTGAGATTCACCCACGCAAGGATTTCGCTGTGACATTGACTGTAGTGGTGGCGCGAACACCATTCGACCGCACCACGCACGGTTTTCAGATCAGTTACTAACGCGTTTTGATTGCAAGATTCGAGCAGTAGCGGCGCGGCCGTGTCTCCGACGTCCGACCATCCAACGGCGAGGTTCCCCTGCTCGAGAAGGGAGGATCCTTCGCAAGCGGACCACGAATTGCTTCATTTTCGTAATCCACACTCGAACGACCTCAAATTGAATTACACATTTTCTACAGAGTTCAGATTTGTGAGTTCAAACTCATTAATTTGTGAGTTTCAAGGGGTTTAATGTTTTATTTCACTGTATTGCAATGTTTTCAATGCGATTTCGAGAATTATTTCATTCTTTATATCTATTCTCTAAGATTTCCACATAGCAAGATTCCTAGTAGTGTATCTGAGTCTAAAAATTTGGATCTTATTGATGTGAGATGATTTGTGCTTATATCAATCCTAAAATTTACATATTGTTAAAATCAAATCTAAGCAAGCTGAGATTCACTTGTGTAGTTTTGTAGGTACGAAGAACTAGGCTTGCTTTGTTCAGCATTGCCAAATGAATGCATTGTGTTGGAATCATCCAACAATTTCTCTGAAAGGCAGCAAAATTTTTGA mRNA sequence ATGATATTACTCGGCGACGACTATATTCAGGCGGCTTTGGACTCGAGCGGATCTGCAACGAGCGGTCCAGCCACGCCTGACGCGCCCGGCGACCAGCGTGGTTTCCAGCGGCTTAGCGGCGCGGCCGTGTCTCCGACGTCCGACCATCCAACGGCGAGGTTCCCCTGCTCGAGAAGGGAGGATCCTTCGCAAGCGGACCACGAATTGCTTCATTTTCGTAATCCACACTCGAACGACCTCAAATTGAATTACACATTTTCTACAGAGTTCAGATTTTTTTGTAGGTACGAAGAACTAGGCTTGCTTTGTTCAGCATTGCCAAATGAATGCATTGTGTTGGAATCATCCAACAATTTCTCTGAAAGGCAGCAAAATTTTTGA Coding sequence (CDS) ATGATATTACTCGGCGACGACTATATTCAGGCGGCTTTGGACTCGAGCGGATCTGCAACGAGCGGTCCAGCCACGCCTGACGCGCCCGGCGACCAGCGTGGTTTCCAGCGGCTTAGCGGCGCGGCCGTGTCTCCGACGTCCGACCATCCAACGGCGAGGTTCCCCTGCTCGAGAAGGGAGGATCCTTCGCAAGCGGACCACGAATTGCTTCATTTTCGTAATCCACACTCGAACGACCTCAAATTGAATTACACATTTTCTACAGAGTTCAGATTTTTTTGTAGGTACGAAGAACTAGGCTTGCTTTGTTCAGCATTGCCAAATGAATGCATTGTGTTGGAATCATCCAACAATTTCTCTGAAAGGCAGCAAAATTTTTGA Protein sequence MILLGDDYIQAALDSSGSATSGPATPDAPGDQRGFQRLSGAAVSPTSDHPTARFPCSRREDPSQADHELLHFRNPHSNDLKLNYTFSTEFRFFCRYEELGLLCSALPNECIVLESSNNFSERQQNF
Homology
BLAST of Csor.00g225940 vs. NCBI nr
Match: KAG6590296.1 (hypothetical protein SDJN03_15719, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 259 bits (661), Expect = 4.46e-87 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 Query: 1 MILLGDDYIQAALDSSGSATSGPATPDAPGDQRGFQRLSGAAVSPTSDHPTARFPCSRRE 60 MILLGDDYIQAALDSSGSATSGPATPDAPGDQRGFQRLSGAAVSPTSDHPTARFPCSRRE Sbjct: 1 MILLGDDYIQAALDSSGSATSGPATPDAPGDQRGFQRLSGAAVSPTSDHPTARFPCSRRE 60
Query: 61 DPSQADHELLHFRNPHSNDLKLNYTFSTEFRFFCRYEELGLLCSALPNECIVLESSNNFS 120 DPSQADHELLHFRNPHSNDLKLNYTFSTEFRFFCRYEELGLLCSALPNECIVLESSNNFS Sbjct: 61 DPSQADHELLHFRNPHSNDLKLNYTFSTEFRFFCRYEELGLLCSALPNECIVLESSNNFS 120
Query: 121 ERQQNF 126 ERQQNF Sbjct: 121 ERQQNF 126
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6590296.1 | 4.46e-87 | 100.00 | hypothetical protein SDJN03_15719, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 53..67 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..67 |
Relationships
The following mRNA feature(s) are a part of this gene:
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