Csor.00g222010 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g222010
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcriptional activator DEMETER-like
Location	Csor_Chr02: 8213335 .. 8213936 (-)
RNA-Seq Expression	Csor.00g222010
Synteny	Csor.00g222010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGCAAATTCCCATTAAACGGGACATATTTTCAAGTCAACGAGGTTAGTCAAAAACTTCACGTTGGAATTCTTCCATGAGCCACAGTATTACTATGAATCATACGCAATTCGAATGCAGGTTTTTGCCGATGACGAATCAAGTAAAAACCCCATTAGCGTTTTTAGGGAATGGATATGGGATCTCCCGCGAAGAATTGTGTATTTCGGAACCTCAACGGCAACAATTTTCAGAGGTAAATTAACATATAACAGAGCACAGCTATAGCTATTAATAATCTAACACTCCTTGTTTACAGGCTTGGGAATTGATGATATCCAGTACTGCTTCCAAAAAGGTATGAACAAAAAACTTACATTCATCGCCATGTCAACTTCTGGAATCACTTGAAACATTTATCGAACTCAGCTCATTGTGTTTTTCTTTACCAGATTTAGCAGATGAGTTTTGTCGTTTGTGTCGTTTTGTAGGATTCATTTGTGTGAGAGGATTCGATCGAAGAACACGAACTCCAAAACGACTAACGGAGCGGTTGCACAGACAAACCAACGCAGCAGCTAAAGCTAGGGCAAACAAAAACACCAATCAGAAACCTTGA

mRNA sequence

ATGAGAGGCAAATTCCCATTAAACGGGACATATTTTCAAGTCAACGAGGTTTTTGCCGATGACGAATCAAGTAAAAACCCCATTAGCGTTTTTAGGGAATGGATATGGGATCTCCCGCGAAGAATTGTGTATTTCGGAACCTCAACGGCAACAATTTTCAGAGGCTTGGGAATTGATGATATCCAGTACTGCTTCCAAAAAGATTTAGCAGATGAGTTTTGTCGTTTGTGTCGTTTTGTAGGATTCATTTGTGTGAGAGGATTCGATCGAAGAACACGAACTCCAAAACGACTAACGGAGCGGTTGCACAGACAAACCAACGCAGCAGCTAAAGCTAGGGCAAACAAAAACACCAATCAGAAACCTTGA

Coding sequence (CDS)

ATGAGAGGCAAATTCCCATTAAACGGGACATATTTTCAAGTCAACGAGGTTTTTGCCGATGACGAATCAAGTAAAAACCCCATTAGCGTTTTTAGGGAATGGATATGGGATCTCCCGCGAAGAATTGTGTATTTCGGAACCTCAACGGCAACAATTTTCAGAGGCTTGGGAATTGATGATATCCAGTACTGCTTCCAAAAAGATTTAGCAGATGAGTTTTGTCGTTTGTGTCGTTTTGTAGGATTCATTTGTGTGAGAGGATTCGATCGAAGAACACGAACTCCAAAACGACTAACGGAGCGGTTGCACAGACAAACCAACGCAGCAGCTAAAGCTAGGGCAAACAAAAACACCAATCAGAAACCTTGA

Protein sequence

MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDDIQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQKP

Homology

[Close]

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot
Match: Q8LK56 (Transcriptional activator DEMETER OS=Arabidopsis thaliana OX=3702 GN=DME PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + 
Sbjct: 1887 MRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQ 1946

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANK 117
            IQ+CF K             GF+CVRGF+++TR P+ L  RLH     A+K + NK
Sbjct: 1947 IQFCFWK-------------GFVCVRGFEQKTRAPRPLMARLH---FPASKLKNNK 1986

[Close]

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot
Match: C7IW64 (Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-30
Identity = 67/118 (56.78%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNEVFAD +SS+NPI V R WIW+LPRR VYFGTS  TIF+GL  ++
Sbjct: 1841 MRGSFPLNGTYFQVNEVFADHDSSRNPIDVPRSWIWNLPRRTVYFGTSIPTIFKGLTTEE 1900

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNT 119
            IQ+CF +             GF+CVRGFDR +R P+ L  RLH     A+K   NK +
Sbjct: 1901 IQHCFWR-------------GFVCVRGFDRTSRAPRPLYARLH---FPASKITRNKKS 1942

[Close]

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot
Match: Q9SJQ6 (DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29
Identity = 67/115 (58.26%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNEVFAD  SS NPI+V RE IW+LPRR VYFGTS  TIF+GL  + 
Sbjct: 1290 MRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEK 1349

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARAN 116
            IQ CF K             G++CVRGFDR+TR PK L  RLH   +     +AN
Sbjct: 1350 IQACFWK-------------GYVCVRGFDRKTRGPKPLIARLHFPASKLKGQQAN 1391

[Close]

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot
Match: B8YIE8 (Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-26
Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNEVFAD  SS NPI++ RE +W+L RR+VYFGTS  TIF+GL  ++
Sbjct: 1750 MRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEE 1809

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQ+CF +             GF+CVRGF+  TR P+ L    H   +   ++     T Q
Sbjct: 1810 IQHCFWR-------------GFVCVRGFNMETRAPRPLCPHFHLAASKLRRSSKKAATEQ 1856

[Close]

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot
Match: Q9SR66 (DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-25
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQ NEVFAD +SS NPI V  E IWDL RR+ Y G+S ++I +GL ++ 
Sbjct: 1229 MRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEA 1288

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLH 104
            I+Y FQ+             G++CVRGFDR  R PK L +RLH
Sbjct: 1289 IKYNFQE-------------GYVCVRGFDRENRKPKSLVKRLH 1318

[Close]

BLAST of Csor.00g222010 vs. NCBI nr
Match: KAG6606006.1 (Protein ROS1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (653), Expect = 5.50e-86
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
           MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1   MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60

Query: 61  IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
           IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ
Sbjct: 61  IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120

Query: 121 KP 122
           KP
Sbjct: 121 KP 122

[Close]

BLAST of Csor.00g222010 vs. NCBI nr
Match: XP_022996087.1 (protein ROS1-like [Cucurbita maxima])

HSP 1 Score: 216 bits (551), Expect = 2.11e-62
Identity = 108/122 (88.52%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1339 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1398

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNT+Q
Sbjct: 1399 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTDQ 1447

Query: 121  KP 122
            KP
Sbjct: 1459 KP 1447

[Close]

BLAST of Csor.00g222010 vs. NCBI nr
Match: KAG7035957.1 (Protein ROS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216 bits (551), Expect = 2.11e-62
Identity = 108/122 (88.52%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1424 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1483

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ
Sbjct: 1484 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 1532

Query: 121  KP 122
             P
Sbjct: 1544 NP 1532

[Close]

BLAST of Csor.00g222010 vs. NCBI nr
Match: XP_023532993.1 (protein ROS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (546), Expect = 9.80e-62
Identity = 107/122 (87.70%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1228 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1287

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNT+ 
Sbjct: 1288 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTDH 1336

Query: 121  KP 122
            KP
Sbjct: 1348 KP 1336

[Close]

BLAST of Csor.00g222010 vs. NCBI nr
Match: XP_022958534.1 (protein ROS1-like [Cucurbita moschata])

HSP 1 Score: 213 bits (543), Expect = 2.52e-61
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1371 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1430

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTN+AAKARANKNT+ 
Sbjct: 1431 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNSAAKARANKNTDH 1479

Query: 121  KP 122
            KP
Sbjct: 1491 KP 1479

[Close]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL
Match: A0A6J1K0Y6 (protein ROS1-like OS=Cucurbita maxima OX=3661 GN=LOC111491404 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 1.02e-62
Identity = 108/122 (88.52%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1339 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1398

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNT+Q
Sbjct: 1399 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTDQ 1447

Query: 121  KP 122
            KP
Sbjct: 1459 KP 1447

[Close]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL
Match: A0A6J1H5D5 (protein ROS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459738 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 1.22e-61
Identity = 106/122 (86.89%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD
Sbjct: 1371 MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 1430

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRLTERLHRQTN+AAKARANKNT+ 
Sbjct: 1431 IQYCFQK-------------GFICVRGFDRRTRTPKRLTERLHRQTNSAAKARANKNTDH 1479

Query: 121  KP 122
            KP
Sbjct: 1491 KP 1479

[Close]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL
Match: A0A1S4E1Z0 (protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 6.11e-52
Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +D
Sbjct: 1581 MRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWIWNLPRRIAYFGTSTTTIFRGLAKED 1640

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRL ERLHR TNA+ KARANKN +Q
Sbjct: 1641 IQYCFQK-------------GFICVRGFDRRTRTPKRLAERLHRATNASIKARANKNDDQ 1688

[Close]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL
Match: A0A5A7SVP4 (Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00270 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 6.11e-52
Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +D
Sbjct: 1585 MRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWIWNLPRRIAYFGTSTTTIFRGLAKED 1644

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRL ERLHR TNA+ KARANKN +Q
Sbjct: 1645 IQYCFQK-------------GFICVRGFDRRTRTPKRLAERLHRATNASIKARANKNDDQ 1692

[Close]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL
Match: A0A1S3C8A0 (protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1)

HSP 1 Score: 186 bits (471), Expect = 6.11e-52
Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRGKFPLNGTYFQVNEVFADDE+SKNPI + REWIW+LPRRI YFGTST TIFRGL  +D
Sbjct: 1585 MRGKFPLNGTYFQVNEVFADDETSKNPIQIPREWIWNLPRRIAYFGTSTTTIFRGLAKED 1644

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANKNTNQ 120
            IQYCFQK             GFICVRGFDRRTRTPKRL ERLHR TNA+ KARANKN +Q
Sbjct: 1645 IQYCFQK-------------GFICVRGFDRRTRTPKRLAERLHRATNASIKARANKNDDQ 1692

[Close]

BLAST of Csor.00g222010 vs. TAIR 10
Match: AT5G04560.1 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-32
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + 
Sbjct: 1629 MRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQ 1688

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANK 117
            IQ+CF K             GF+CVRGF+++TR P+ L  RLH     A+K + NK
Sbjct: 1689 IQFCFWK-------------GFVCVRGFEQKTRAPRPLMARLH---FPASKLKNNK 1728

[Close]

BLAST of Csor.00g222010 vs. TAIR 10
Match: AT5G04560.2 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-32
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNE+FAD ESS  PI V R+WIWDLPRR VYFGTS  +IFRGL  + 
Sbjct: 1887 MRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQ 1946

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARANK 117
            IQ+CF K             GF+CVRGF+++TR P+ L  RLH     A+K + NK
Sbjct: 1947 IQFCFWK-------------GFVCVRGFEQKTRAPRPLMARLH---FPASKLKNNK 1986

[Close]

BLAST of Csor.00g222010 vs. TAIR 10
Match: AT2G36490.1 (demeter-like 1 )

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30
Identity = 67/115 (58.26%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQVNEVFAD  SS NPI+V RE IW+LPRR VYFGTS  TIF+GL  + 
Sbjct: 1290 MRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEK 1349

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLHRQTNAAAKARAN 116
            IQ CF K             G++CVRGFDR+TR PK L  RLH   +     +AN
Sbjct: 1350 IQACFWK-------------GYVCVRGFDRKTRGPKPLIARLHFPASKLKGQQAN 1391

[Close]

BLAST of Csor.00g222010 vs. TAIR 10
Match: AT3G10010.1 (demeter-like 2 )

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-26
Identity = 56/103 (54.37%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQ NEVFAD +SS NPI V  E IWDL RR+ Y G+S ++I +GL ++ 
Sbjct: 1229 MRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEA 1288

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLH 104
            I+Y FQ+             G++CVRGFDR  R PK L +RLH
Sbjct: 1289 IKYNFQE-------------GYVCVRGFDRENRKPKSLVKRLH 1318

[Close]

BLAST of Csor.00g222010 vs. TAIR 10
Match: AT4G34060.1 (demeter-like protein 3 )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 1    MRGKFPLNGTYFQVNEVFADDESSKNPISVFREWIWDLPRRIVYFGTSTATIFRGLGIDD 60
            MRG FPLNGTYFQ NEVFAD E+S NPI   RE    L +R +Y G++  +IF+ L    
Sbjct: 939  MRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRR 998

Query: 61   IQYCFQKDLADEFCRLCRFVGFICVRGFDRRTRTPKRLTERLH 104
            I+ CF             + GF+C+R FDR+ R PK L  RLH
Sbjct: 999  IELCF-------------WTGFLCLRAFDRKQRDPKELVRRLH 1028

The following BLAST results are available for this feature:

BLAST of Csor.00g222010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LK56	1.1e-30	57.76	Transcriptional activator DEMETER OS=Arabidopsis thaliana OX=3702 GN=DME PE=1 SV...	[more]
C7IW64	3.2e-30	56.78	Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2	[more]
Q9SJQ6	2.1e-29	58.26	DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2	[more]
B8YIE8	4.8e-26	49.17	Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2	[more]
Q9SR66	1.4e-25	54.37	DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2	[more]

BLAST of Csor.00g222010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606006.1	5.50e-86	100.00	Protein ROS1A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022996087.1	2.11e-62	88.52	protein ROS1-like [Cucurbita maxima]	[more]
KAG7035957.1	2.11e-62	88.52	Protein ROS1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023532993.1	9.80e-62	87.70	protein ROS1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958534.1	2.52e-61	86.89	protein ROS1-like [Cucurbita moschata]	[more]

BLAST of Csor.00g222010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0Y6	1.02e-62	88.52	protein ROS1-like OS=Cucurbita maxima OX=3661 GN=LOC111491404 PE=3 SV=1	[more]
A0A6J1H5D5	1.22e-61	86.89	protein ROS1-like OS=Cucurbita moschata OX=3662 GN=LOC111459738 PE=3 SV=1	[more]
A0A1S4E1Z0	6.11e-52	76.03	protein ROS1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]
A0A5A7SVP4	6.11e-52	76.03	Protein ROS1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3C8A0	6.11e-52	76.03	protein ROS1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497972 PE=3 SV=1	[more]

BLAST of Csor.00g222010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04560.1	7.9e-32	57.76	HhH-GPD base excision DNA repair family protein	[more]
AT5G04560.2	7.9e-32	57.76	HhH-GPD base excision DNA repair family protein	[more]
AT2G36490.1	1.5e-30	58.26	demeter-like 1	[more]
AT3G10010.1	1.0e-26	54.37	demeter-like 2	[more]
AT4G34060.1	1.8e-20	47.57	demeter-like protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028925	Demeter, RRM-fold domain	PFAM	PF15628	RRM_DME	coord: 1..104 e-value: 3.6E-38 score: 129.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..122
IPR044811	DNA glycosylase, plant	PANTHER	PTHR46213	TRANSCRIPTIONAL ACTIVATOR DEMETER	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g222010.m01	Csor.00g222010.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006287	base-excision repair, gap-filling
biological_process	GO:0080111	DNA demethylation
biological_process	GO:0006306	DNA methylation
biological_process	GO:0045004	DNA replication proofreading
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006297	nucleotide-excision repair, DNA gap filling
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0043078	polar nucleus
cellular_component	GO:0008622	epsilon DNA polymerase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0035514	DNA demethylase activity
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0019104	DNA N-glycosylase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008310	single-stranded DNA 3'-5' exodeoxyribonuclease activity