Csor.00g214640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g214640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein S16
Location	Csor_Chr10: 3453281 .. 3456886 (-)
RNA-Seq Expression	Csor.00g214640
Synteny	Csor.00g214640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTCGAATTCGATTGTCGAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCCGGGACGGCAAGCATCTGGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTTAATTCATTTGCTATTTTTTCCTTTCTATCTGTTTGTTTATCTGGAAAAAATGTGATTGATTACTCCTGCTAGCTTGTGTGTTAGAATTTAGATTCTTGATTTGAACGTTGTTTTGTTTTTCTCCCTTGGTTTGAGTTTTTCTTTTATCTTTTTGCAGGTCAAGATGGTGGTAAACGAATGGGACTTAATTTTGAAAGAGTGAAGTAAGTGATTGCTTTTGGATTGTAGCTAACTTCATTCTAAAAGTCTGCTTGGTTCTTGAATTTAAACGCTGCGTTGCAATTGTTAATACTAGTTTTAATTAGGTAAGTTAACAAACAAATTAGCTGAAGCTGTAAGGTCTGGTAATGAAGCAAAGTGCTATTGAAACAAGAAATCCTAATTCCAAATTCAGGCTATACTATTTTCTATACCATTTCTTACTTACAGTTCACATCTTGCACCTTATGAATCAAAGTATGAAAAAAAGGTTTGGATGGTTGAGAAGTGATTATATTTTCTTGATAACCCAAGCTTTTGTATATTGTGGTGATTACATTTTCTAATGGTGATGAAGAAAGAATGGAAAACGGGATCTGGCTATCAAGTTGATGGAGCCGATGAGGAAATCCTTACTTTTTTAGAGCATCGAGTCATTTGATAAAGTAATTGGGCTGCTCCTTAATTGCATTGGAGTGGATATAGTTTAGTGGTAAAAGTGTGAGTAGGATCGCCTAGCCACGCTTCATAATTGGAAAAACGAGCACCGTGGAACCAAAGAAACTGTTTAATAACTATTTTGTTTTGCTTCTGTTGTCTGCTACCTCTGCTACCTTTTGCATTTCTAATTCAAGTTCTGATTAATGATTATTAGACAGAACGGAGGATAACACGTCTAAGACGAAGCATTATCTTGGAAGATAATTCGTATTGTACGGTCTCATGCTATGCATAAAAGCAAACCATCAGGTATAAGTTTTAGGCATTTAGAGTTTGGTCTCTGGTCTCTTTGTGGCTTAGAGTCTATCAGGTTAACATTCCCCCAATTCCTTGATTGCTTTGAATTCTTGGGCAGCTCTTTTTGAGTAAATTAGTCTTCTATGAATATAGTAAGGCCGCTCTTCAGAGCACTTTTTTGTGTAAGGTAGTTGTCAAACTGCTATCTTGATCGACCACAGAGCGCGCCCTTGATAATTGCGTCGTTGTGCCTGGGGAGCGAAGCATTCCTTAAAAGGGAGTGGAAATCTCTCCTTAATAGACATGTTTTAAAACTGTGAGGCTGACGGCCATACGTAACAGGCCAAAGCAGACAAATATCTGCTAGCAGTGAGTTTGGGCTGTTACAAATGGTAACAGAGCCAGACACCGGGCGGTGTGCCAGCAAGAACACTGGCCTTCGAGAGGGGTGGATTATGAGATCCCCCATCGGTTGGAGAAGGGAACGAAGCACTCCTTATAAGAGTGTGAAAACCTCCCTTAGCAGACGAATTTTAGAAACCGTGAGGCTGACGATGATACGTAACGCGCTAAAGCGAACAATATTTGCTAGCGGAGTATCATTTTATGCAACACCTACCACCTCTCTCTTCTTTTAAAGCTCCTATAATTCAAAAAGAGTTGCTATAACCTGAGATTGGATGATTTAGATTATTTTGCTGCATAAGCTTTGCTGTTTTACTGTGGTAGTATTCATTTCGAACTTGTACACGCAATAACCTCGTCTTTCATACTAATCATTCACTCATCACACTCTCCCTTTCTTCTAGGTATTGGCTATCAGTTGGTGCTCAGCCTTCAGAACCCATGCAACGTATTCTTTTTAGATCAGGGGTACTTCCACCCCCTCCAATGGTTGCAATGGCGCGTAAAGGTGGACCACGTGATACTCGTGTTGTTGATCCTCTGAGCGGACGCATCGTGTCTCCAGAGAAGCCAACTAATGATTCTAGTAGGAAAGATGGCAATGCTGATTCGTAATTTTCTTTTAGAAAAATCTCTAGAATTTGACACAAAAGTCGAATGAACCTAGATCCGTTTGGGCACCGATTCGGAATCATAAACCCTAGAGTTCTGAAATCCATAAAGTTGATGATCGGCTGGAAGTATAAACTCGAGTTTCTAAAGCTTATGTTTAGAAATGTAAGGTTGAGCTTGGTTAGATAATTTGTTTTTTTAATTGTATATCAATATTTTGATTCATTTTGTGTGAAGCAATTATCTCGACCATATTTAAAATTAAATTATATTATGTGTGCCATTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAACAAATATTTGAAAGTATATTTTACAAAGTACTTTGACAAAAAGTTCAAATGCTATGTTTTTTTTTTTTCTTTTGCAAATATATTTTTAAAATTTTAATAGACTTTTGGAATTTTGAAAGTAGATTTTTATTAAGTGTTTTGATAAAAAAAATTCAAATATTGTGAAAATAACTGTGCTTTTTTTTATTTTTATTAAGAATTGTTAAAAAAAATTATAAAATTCTAACCATCTTGAAAAGGTTTCAATATATATATATATATTATTTATTTCAGGTCGTATTTTTTTTCTCTTAAAAAAAGCGAAAAGGCGGTGAGAGCTCTCCTATTCCGACTTCTCCAGAGCCTCCAGTAGCACAGCTAAGATAGCGATGGGTTCTTTGCCCCTGTGGGATGGAGTGACAGAAGTTTTGAGAATTCAAGAGCGAAATAGGAGTGCAGTGATGGAGACATCCTAACCTGCGGGGATGGAGCAACAGAAGTTTTGAGAATTCAAGAGAAGGTTACGACAAAGTAGGAGTGCAGTGATGGAGACATACGCGCGAAGTAGGAGTGCAATGATGGAGACATCCTAACAGAACAGTAGACTTAAACCTTGTTCTGACCTGATCAATTCGATTAGGCACTCGCCATCTATTTTCATTGTTTAACTCTAACAACACGAAAAAAACCATTTGTTCAACTCTTTGACAACATGAAAAAACAAAAAAGAGCTATGCTCTCCCTTATCTATCCAAGGGAATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCGATCAAGAATTGGTGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCGTTTTTTCGTTCATGGTTCGATATTCTGTAGTTGACTGATTGATATAAATTTACCGTTTGTGGCTAATAAAAACCTAAAATTTTAATTAAAAAAAAAAAAAAAAAAGTTTAGAGGTTAAATTTGTAATTTGACCAGGTTTTTAATGGGCCTTAAATGTCCCTTAAACCTGGCTTGGCCCATTATATTTCAGATGGATCCTCGTTTTTAACTCATCGTTTCATACCTCGGTTTGCCCGCCAATTTCGATCCTCGCGGAGGGAAGAGCGAAGCCAGGAGCCTCACTTCAGCTATTTGCGTCTGCCGCAACTCCACCTGCTCATCTTCTTCCTTCCTCTCACTCTGCTACGTGCGCAACCATGAAAACCATAGCATTTTAG

mRNA sequence

ATGGTGGTTCGAATTCGATTGTCGAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCCGGGACGGCAAGCATCTGGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGACTTAATTTTGAAAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAGCCTTCAGAACCCATGCAACGTATTCTTTTTAGATCAGGGGTACTTCCACCCCCTCCAATGGTTGCAATGGCGCGTAAAGGTGGACCACGTGATACTCGTGTTGTTGATCCTCTGAGCGGACGCATCGTGTCTCCAGAGAAGCCAACTAATGATTCTAGTAGGAAAGATGGCAATGCTGATTCATGGATCCTCGTTTTTAACTCATCGTTTCATACCTCGGTTTGCCCGCCAATTTCGATCCTCGCGGAGGGAAGAGCGAAGCCAGGAGCCTCACTTCAGCTATTTGCGTCTGCCGCAACTCCACCTGCTCATCTTCTTCCTTCCTCTCACTCTGCTACGTGCGCAACCATGAAAACCATAGCATTTTAG

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCGAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTGATGGCTGCCGATAGCCGATCTCCCCGGGACGGCAAGCATCTGGAGGTTCTAGGTTACTATAATCCCCTGCCAGGTCAAGATGGTGGTAAACGAATGGGACTTAATTTTGAAAGAGTGAAGTATTGGCTATCAGTTGGTGCTCAGCCTTCAGAACCCATGCAACGTATTCTTTTTAGATCAGGGGTACTTCCACCCCCTCCAATGGTTGCAATGGCGCGTAAAGGTGGACCACGTGATACTCGTGTTGTTGATCCTCTGAGCGGACGCATCGTGTCTCCAGAGAAGCCAACTAATGATTCTAGTAGGAAAGATGGCAATGCTGATTCATGGATCCTCGTTTTTAACTCATCGTTTCATACCTCGGTTTGCCCGCCAATTTCGATCCTCGCGGAGGGAAGAGCGAAGCCAGGAGCCTCACTTCAGCTATTTGCGTCTGCCGCAACTCCACCTGCTCATCTTCTTCCTTCCTCTCACTCTGCTACGTGCGCAACCATGAAAACCATAGCATTTTAG

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDSSRKDGNADSWILVFNSSFHTSVCPPISILAEGRAKPGASLQLFASAATPPAHLLPSSHSATCATMKTIAF

Homology

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BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-54
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPT--- 120
           YWLSVGAQPS+P+QR+LFRSG+LPPPPMVAM RKGG RDTR VDP++GR V  E  T   
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 NDSSRKDGNADS 130
           ND+  K+ + ++
Sbjct: 121 NDNQPKEEDTEA 132

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BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.6e-31
Identity = 59/113 (52.21%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT-RVVDPLSGRIVS 113
           YWLSVGAQP++ ++ +LFR+G++PP PMV +  K G + T + V P++G I++
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEILN 113

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BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot
Match: A8LMC0 (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQ 60

Query: 61 YWLSVGAQPSEPMQRILFRSGVLP 85
          YWL  GA+P++ + R+L  + VLP
Sbjct: 61 YWLGEGAKPTDRVARMLEAAEVLP 84

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BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSEPMQRILFRSGVL 84
          YWLS GAQ ++ + R+L  +GV+
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

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BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot
Match: A5V9P7 (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
          M V IRL+R G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ +R K
Sbjct: 1  MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAK 60

Query: 61 YWLSVGAQPSEPMQRILFRSGV 83
          +WLSVGAQP++ + R L  +GV
Sbjct: 61 HWLSVGAQPTDRVARFLDAAGV 82

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BLAST of Csor.00g214640 vs. NCBI nr
Match: KAG6590008.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387 bits (994), Expect = 9.20e-136
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SRKDGNADSWILVFNSSFHTSVCPPISILAEGRAKPGASLQLFASAATPPAHLLPSSHSA 180
           SRKDGNADSWILVFNSSFHTSVCPPISILAEGRAKPGASLQLFASAATPPAHLLPSSHSA
Sbjct: 121 SRKDGNADSWILVFNSSFHTSVCPPISILAEGRAKPGASLQLFASAATPPAHLLPSSHSA 180

Query: 181 TCATMKTIAF 190
           TCATMKTIAF
Sbjct: 181 TCATMKTIAF 190

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BLAST of Csor.00g214640 vs. NCBI nr
Match: XP_022960937.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata] >XP_022960939.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 268 bits (684), Expect = 2.02e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SRKDGNADS 129
           SRKDGNADS
Sbjct: 121 SRKDGNADS 129

[Close]

BLAST of Csor.00g214640 vs. NCBI nr
Match: KAG7023670.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (678), Expect = 1.66e-88
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SRKDGNADS 129
           S KDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]

BLAST of Csor.00g214640 vs. NCBI nr
Match: XP_023516386.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023516387.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262 bits (669), Expect = 3.91e-87
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEP+QRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPT+DS
Sbjct: 61  YWLSVGAQPSEPVQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTDDS 120

Query: 121 SRKDGNADS 129
           S KDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]

BLAST of Csor.00g214640 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 255 bits (651), Expect = 2.16e-84
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPT+DS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 SRKDGNADS 129
           S KDGNADS
Sbjct: 121 SSKDGNADS 129

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BLAST of Csor.00g214640 vs. ExPASy TrEMBL
Match: A0A6J1H8S5 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111461591 PE=3 SV=1)

HSP 1 Score: 268 bits (684), Expect = 9.80e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS
Sbjct: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120

Query: 121 SRKDGNADS 129
           SRKDGNADS
Sbjct: 121 SRKDGNADS 129

[Close]

BLAST of Csor.00g214640 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 1.05e-84
Identity = 121/129 (93.80%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPSEP+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR V+PEKPT+DS
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEKPTDDS 120

Query: 121 SRKDGNADS 129
           S KDGNADS
Sbjct: 121 SSKDGNADS 129

[Close]

BLAST of Csor.00g214640 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 1.15e-79
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR  +P+K T+DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 -SRKDGNADS 129
            S KDG+ADS
Sbjct: 121 NSSKDGDADS 130

[Close]

BLAST of Csor.00g214640 vs. ExPASy TrEMBL
Match: A0A6J1F6D0 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441226 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 1.15e-79
Identity = 117/130 (90.00%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYHPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPTNDS 120
           YWLSVGAQPS+P+QRILFR+GVLPPPPMVAMARKGGPRDTR VDPLSGR  +P+K T+DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 -SRKDGNADS 129
            S KDGNADS
Sbjct: 121 NSSKDGNADS 130

[Close]

BLAST of Csor.00g214640 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 1.56e-77
Identity = 113/130 (86.92%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEK-PTND 120
           YWLSVGAQPS+PMQRILFR+G+LPPPPMVAM RKGGPRDTR VDPLSGR V+PEK PT+ 
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SSRKDGNADS 129
           S+ + G+ADS
Sbjct: 121 SNGEVGDADS 130

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BLAST of Csor.00g214640 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-55
Identity = 100/132 (75.76%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDTRVVDPLSGRIVSPEKPT--- 120
           YWLSVGAQPS+P+QR+LFRSG+LPPPPMVAM RKGG RDTR VDP++GR V  E  T   
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 NDSSRKDGNADS 130
           ND+  K+ + ++
Sbjct: 121 NDNQPKEEDTEA 132

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BLAST of Csor.00g214640 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-32
Identity = 59/113 (52.21%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSEPMQRILFRSGVLPPPPMVAMARKGGPRDT-RVVDPLSGRIVS 113
           YWLSVGAQP++ ++ +LFR+G++PP PMV +  K G + T + V P++G I++
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEILN 113

[Close]

BLAST of Csor.00g214640 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-07
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKY 61
          +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSEPMQRILFRSGV 83
          +L  GAQP+     I  ++G+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:

BLAST of Csor.00g214640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS6	2.3e-54	75.76	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana...	[more]
O65686	4.6e-31	52.21	30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
A8LMC0	1.2e-18	51.19	30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14...	[more]
Q5LNF2	1.2e-18	51.81	30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /...	[more]
A5V9P7	1.2e-18	52.44	30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM...	[more]

BLAST of Csor.00g214640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590008.1	9.20e-136	100.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita arg...	[more]
XP_022960937.1	2.02e-89	100.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschat...	[more]
KAG7023670.1	1.66e-88	99.22	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucurbita argyrosperma...	[more]
XP_023516386.1	3.91e-87	97.67	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita pepo su...	[more]
XP_022147743.1	2.16e-84	93.80	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Csor.00g214640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8S5	9.80e-90	100.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1D251	1.05e-84	93.80	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ...	[more]
A0A6J1HXD7	1.15e-79	90.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1F6D0	1.15e-79	90.00	30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita mosch...	[more]
A0A5D3CDW9	1.56e-77	86.92	30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Csor.00g214640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56940.1	1.6e-55	75.76	Ribosomal protein S16 family protein	[more]
AT4G34620.1	3.2e-32	52.21	small subunit ribosomal protein 16	[more]
ATCG00050.1	1.6e-07	33.33	ribosomal protein S16	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	3.30.1320.10		coord: 1..121 e-value: 6.4E-45 score: 154.1
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	54565	Ribosomal protein S16	coord: 3..95
IPR000307	Ribosomal protein S16	TIGRFAM	TIGR00002	TIGR00002	coord: 3..82 e-value: 1.8E-30 score: 102.7
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 9..70 e-value: 1.7E-26 score: 92.1
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 1..112
IPR000307	Ribosomal protein S16	HAMAP	MF_00385	Ribosomal_S16	coord: 2..80 score: 23.299761
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..124
None	No IPR available	PANTHER	PTHR12919:SF30	30S RIBOSOMAL PROTEIN S16-LIKE	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g214640.m01	Csor.00g214640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome