Csor.00g211610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g211610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	pentatricopeptide repeat-containing protein At5g61370, mitochondrial
Location	Csor_Chr11: 925163 .. 926561 (+)
RNA-Seq Expression	Csor.00g211610
Synteny	Csor.00g211610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGCACGCACCCCATGTGTTCGACGATATTCCATCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCGCCGGTAACAATGGAGCTTCTGTGCTAGAACTGTGTAAAATAGTTTCATGCTCGATCGGTGGGCTAGATGAATTGGAAGCCAGTCTGAACAGATGTACAGTATCCTTGACATCTTCACTGGTAACCCGGGTTATGGATTCTTGCAAAAACGAAGCTCTCACTAGAAGAGTGGTTAGATTTTTCTTGTGGTCTCTCAAGAATTTGAAACATGATTGGGTAGATGAATTGCATCTATATAAGCAAGGTGAGAGTTCTGTTCCTGAGTGGAAGGTTTGGGAAAGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGTAAGAATCTATCTTTGAAATAACTTTTTGAGTTTTTGCTATCAAACCAAATCATGTGAAGTTATTTTCTTCTCGATTAATATTGTTGGGCTCTCAACGGATTATCCTAATTCTAATTTTGTAGAACAAAAAAAGAAAAAACCTAAAAATTCTGAGTGGTGACAGAAGGAGCTAGGAACTTGGAATTTGTGTAATAGAAAAAACATCCCAATAATCAGGAAACAGTGGATCCAATCACGGATCAGACGGATGCATGTGCCGTTTGAGATTTACATAAAATCCATCGGACATGAATTATAATCTTTGTTTAATGACATTAAACTTCTAATCATTCACAGAAAGTCCTTCAATTCAACGCCCCGTCGGTGTTCATTGTTCAGACAAATCTCTCCATTGTCTCTTCTTCTTCTTCCTTTCTTGGCTGTTCCTTATCTATCACCACCATGAATTGAATTGAATTGAATTGAATTGAATTGAATTGAACTGAATTGAATTGAATTCATCGCCATTACCCATTACTGTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACCTCTTCCCTCCATGATTGTCCCATTTTCTGTCCCACCTCTTTGATTTCTGATCTTGCTGACATAATTGAATTGCAGGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

mRNA sequence

ATGCAATGCACGCACCCCATGTGTTCGACGATATTCCATCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCGCCGGTAACAATGGAGCTTCTGTGCTAGAACTGTGTAAAATAGTTTCATGCTCGATCGGTGGGCTAGATGAATTGGAAGCCAGTCTGAACAGATGTACAGTATCCTTGACATCTTCACTGGTAACCCGGGTTATGGATTCTTGCAAAAACGAAGCTCTCACTAGAAGAGTGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Coding sequence (CDS)

ATGCAATGCACGCACCCCATGTGTTCGACGATATTCCATCGAGAATATGCGTCTCAGAGTCGCTTATGCTCCCATCACTCCGCCGGTAACAATGGAGCTTCTGTGCTAGAACTGTGTAAAATAGTTTCATGCTCGATCGGTGGGCTAGATGAATTGGAAGCCAGTCTGAACAGATGTACAGTATCCTTGACATCTTCACTGGTAACCCGGGTTATGGATTCTTGCAAAAACGAAGCTCTCACTAGAAGAGTGGGCACGGGATTGTGGACGACATGGTTGATCCCGGATCGAAAATTCTACTTTGATTTGATTGGTATTCTGTGTGGAGCTGAGAGAGCAAGTTATGCACTTGAGCTGTTCGAGAAAATGAAAAGAAGCTCATTGGGAGGTTATAGTCCAGTTTATGATGTGCTCATACCAAAGCTTTGCAGAGGAGGTGATTTTGAAATGGGCAGGCAACTGTGGGAGGAGGCCATGGCTATGGGTCTCAAGCTTGGGTGCTCAGTGAGGTTTTCAAGCCAACAAGAAAGATTCATAGCAAAATTCTTGAGGAATACAACAGAGGCTGAGAAGCAAAACGAAGCTGCAACTGACAAAACCATAGCGATGGGCAAGAGAAGAGACGAGGTGGAGGAGAGAGCTGTTGGATAG

Protein sequence

MQCTHPMCSTIFHREYASQSRLCSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCTVSLTSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG

Homology

[Close]

BLAST of Csor.00g211610 vs. ExPASy Swiss-Prot
Match: Q9FLJ6 (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-27
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 95  PDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQL 154
           P+RKFY+DLIG+LCG ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+L
Sbjct: 353 PERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGREL 412

Query: 155 WEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTI 202
           WEEA+++ + L CS+         + K ++   EA   +  A +  I
Sbjct: 413 WEEALSIDVTLSCSISLLDPSVTEVFKPMKMKEEAAMVDRRALNLKI 459

HSP 2 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 23 CSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCTVSLTSSLVTRVMDSCKNEALTR 82
          CSHH    +  ++ E+ +IVS  +GGLD+LE +LN+ +VS +S+LVT+V++SCKNE   R
Sbjct: 25 CSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPR 84

Query: 83 RV 85
          R+
Sbjct: 85 RL 86

[Close]

BLAST of Csor.00g211610 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.2e-04
Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0


Query: 98  KFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEE 157
           K Y  LI       R   A +LFEKM+R  +     +YDVLI  LC+  D EM   L+ E
Sbjct: 284 KTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLE 343

Query: 158 AMAMGL--------KLGCSVRFSSQQE 177
               G+        KL CS  FS + E
Sbjct: 344 IKRSGIPPDRGILGKLLCS--FSEESE 368

[Close]

BLAST of Csor.00g211610 vs. NCBI nr
Match: KAG6587555.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 436 bits (1120), Expect = 4.13e-154
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MQCTHPMCSTIFHREYASQSRLCSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCT 60
           MQCTHPMCSTIFHREYASQSRLCSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCT
Sbjct: 1   MQCTHPMCSTIFHREYASQSRLCSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCT 60

Query: 61  VSLTSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELF 120
           VSLTSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELF
Sbjct: 61  VSLTSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELF 120

Query: 121 EKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIA 180
           EKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIA
Sbjct: 121 EKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIA 180

Query: 181 KFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 216
           KFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG
Sbjct: 181 KFLRNTTEAEKQNEAATDKTIAMGKRRDEVEERAVG 216

[Close]

BLAST of Csor.00g211610 vs. NCBI nr
Match: KAG7021531.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268 bits (685), Expect = 3.68e-88
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 85  GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR 144
           GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR
Sbjct: 64  GTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCR 123

Query: 145 GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG 204
           GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG
Sbjct: 124 GGDFEMGRQLWEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTIAMG 183

Query: 205 KRRDEVEERAVG 216
           KRRDEVEERAVG
Sbjct: 184 KRRDEVEERAVG 195

[Close]

BLAST of Csor.00g211610 vs. NCBI nr
Match: KAG6589519.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (409), Expect = 3.42e-43
Identity = 88/148 (59.46%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+          R+   +    LIPDRKFY+DLIGILCG E   YALELFEKMKRS
Sbjct: 345 LVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVESEKYALELFEKMKRS 404

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS         +      + 
Sbjct: 405 SLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKI 464

Query: 187 IAKFLRNTTEAEKQNEAATDKTIAMGKR 206
             + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 465 DNQNLEESSRAEKQNKAATDKSKARGKR 492

[Close]

BLAST of Csor.00g211610 vs. NCBI nr
Match: XP_022921576.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita moschata])

HSP 1 Score: 162 bits (409), Expect = 3.42e-43
Identity = 88/148 (59.46%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+          R+   +    LIPDRKFY+DLIGILCG E   YALELFEKMKRS
Sbjct: 345 LVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVESEKYALELFEKMKRS 404

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS         +      + 
Sbjct: 405 SLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKI 464

Query: 187 IAKFLRNTTEAEKQNEAATDKTIAMGKR 206
             + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 465 DNQNLEESSRAEKQNKAATDKSKARGKR 492

[Close]

BLAST of Csor.00g211610 vs. NCBI nr
Match: XP_023516447.1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160 bits (406), Expect = 9.33e-43
Identity = 87/148 (58.78%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+          R+   +    LIPDRKFY+DLIGILCG E   YALELFEKMKRS
Sbjct: 345 LVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVESEKYALELFEKMKRS 404

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS         +      + 
Sbjct: 405 SLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKI 464

Query: 187 IAKFLRNTTEAEKQNEAATDKTIAMGKR 206
             + L  ++ AEKQN+AATDK+ A GK+
Sbjct: 465 DNQGLEESSRAEKQNKAATDKSKARGKK 492

[Close]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL
Match: A0A6J1E1S0 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111429800 PE=4 SV=1)

HSP 1 Score: 162 bits (409), Expect = 1.66e-43
Identity = 88/148 (59.46%), Postives = 99/148 (66.89%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+          R+   +    LIPDRKFY+DLIGILCG E   YALELFEKMKRS
Sbjct: 345 LVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVESEKYALELFEKMKRS 404

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGL L CS         +      + 
Sbjct: 405 SLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLTLRCSSDVLDPSITKVFKPTRKI 464

Query: 187 IAKFLRNTTEAEKQNEAATDKTIAMGKR 206
             + L  ++ AEKQN+AATDK+ A GKR
Sbjct: 465 DNQNLEESSRAEKQNKAATDKSKARGKR 492

[Close]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL
Match: A0A6J1BYQ1 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111006837 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 1.20e-41
Identity = 86/149 (57.72%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+         RR+   +    LIPD KFY+DLIGILCG ER +YALE+ +KMKRS
Sbjct: 338 LVARVLFLTGRFGKGRRIVDEMIDEGLIPDXKFYYDLIGILCGVERVNYALEMLDKMKRS 397

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKL CS         +      + 
Sbjct: 398 SLGGYGPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLRCSREVLDPSITKVWLPTRKT 457

Query: 187 IAKFLRNTTEAEKQNEAA-TDKTIAMGKR 206
            +K L     AEKQN+AA TD+  A GK+
Sbjct: 458 DSKILEEVNGAEKQNQAAATDRPKAKGKK 486

[Close]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL
Match: A0A6J1JIV3 (pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484976 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 2.49e-41
Identity = 85/148 (57.43%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+          R+   +    LIPDRKFY+DLIGILCG ER  YALELFEKMKRS
Sbjct: 345 LVARVLFLSGRFGKGCRIVEEMIEEGLIPDRKFYYDLIGILCGVEREKYALELFEKMKRS 404

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPKLC GGDFEMGRQLW EAMAMG+ L CS         +      + 
Sbjct: 405 SLGGYGPVYDVLIPKLCSGGDFEMGRQLWGEAMAMGITLRCSSDVLDPSITKVFKPTRKI 464

Query: 187 IAKFLRNTTEAEKQNEAATDKTIAMGKR 206
             + L     AEKQN+AATDK+ A GK+
Sbjct: 465 DNQNLEECNRAEKQNKAATDKSKARGKK 492

[Close]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL
Match: A0A0A0LPF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 8.36e-40
Identity = 80/134 (59.70%), Postives = 90/134 (67.16%), Query Frame = 0


Query: 80  LTRRVGTG------LWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSP 139
           LT R G G      +    L PDRKFY+DLIGILCG ER +YALELFEKMKRSSLGGY P
Sbjct: 345 LTGRFGKGREIVDEMIEEGLTPDRKFYYDLIGILCGVERTNYALELFEKMKRSSLGGYGP 404

Query: 140 VYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERFIAKFLRN 199
           VYDVLIPKLCRGG+FEMGRQLWEEAMAMG+ L CS         +      +   K +  
Sbjct: 405 VYDVLIPKLCRGGEFEMGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKIENKIVEE 464

[Close]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL
Match: A0A5A7US52 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002610 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 2.24e-39
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 67  LVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRS 126
           LV RV+         R +   +    L PDRKFY++LIGILCG ER +YA+ELFEKMKRS
Sbjct: 338 LVARVLFLTGRFGKGREIVDEMIEEGLTPDRKFYYELIGILCGVERTNYAVELFEKMKRS 397

Query: 127 SLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAMAMGLKLGCS--------VRFSSQQERF 186
           SLGGY PVYDVLIPK+CRGGDFEMGRQLWEEAMAMG+ L CS         +      + 
Sbjct: 398 SLGGYGPVYDVLIPKVCRGGDFEMGRQLWEEAMAMGVSLNCSSEILDPSITKVFKPTRKI 457

Query: 187 IAKFLRNTTEAEKQNEAATDK 199
             K +     AEKQN+AA +K
Sbjct: 458 ENKIVEECNTAEKQNKAAAEK 478

[Close]

BLAST of Csor.00g211610 vs. TAIR 10
Match: AT5G61370.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-28
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 95  PDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQL 154
           P+RKFY+DLIG+LCG ER ++AL+LFEKMKRSS+GGY  VYD+LIPKLC+GG+FE GR+L
Sbjct: 353 PERKFYYDLIGVLCGVERVNFALQLFEKMKRSSVGGYGQVYDLLIPKLCKGGNFEKGREL 412

Query: 155 WEEAMAMGLKLGCSVRFSSQQERFIAKFLRNTTEAEKQNEAATDKTI 202
           WEEA+++ + L CS+         + K ++   EA   +  A +  I
Sbjct: 413 WEEALSIDVTLSCSISLLDPSVTEVFKPMKMKEEAAMVDRRALNLKI 459

HSP 2 Score: 62.8 bits (151), Expect = 4.0e-10
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 23 CSHHSAGNNGASVLELCKIVSCSIGGLDELEASLNRCTVSLTSSLVTRVMDSCKNEALTR 82
          CSHH    +  ++ E+ +IVS  +GGLD+LE +LN+ +VS +S+LVT+V++SCKNE   R
Sbjct: 25 CSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPR 84

Query: 83 RV 85
          R+
Sbjct: 85 RL 86

[Close]

BLAST of Csor.00g211610 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.6e-05
Identity = 32/87 (36.78%), Postives = 40/87 (45.98%), Query Frame = 0


Query: 98  KFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEE 157
           K Y  LI       R   A +LFEKM+R  +     +YDVLI  LC+  D EM   L+ E
Sbjct: 284 KTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYDVLIGGLCKHKDLEMALSLYLE 343

Query: 158 AMAMGL--------KLGCSVRFSSQQE 177
               G+        KL CS  FS + E
Sbjct: 344 IKRSGIPPDRGILGKLLCS--FSEESE 368

[Close]

BLAST of Csor.00g211610 vs. TAIR 10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 29/96 (30.21%), Postives = 44/96 (45.83%), Query Frame = 0


Query: 64  TSSLVTRVMDSCKNEALTRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKM 123
           T +++ + +   K  A  + +  G+ +  + P+   Y  LI   C  E    A+ LFE M
Sbjct: 254 TYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVM 313

Query: 124 KRSSLGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAM 160
             +     S  Y  LI  LC+GGDFE    L  E+M
Sbjct: 314 VCNGYKPDSECYFTLIHCLCKGGDFETALILCRESM 349

[Close]

BLAST of Csor.00g211610 vs. TAIR 10
Match: AT3G06920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 4.2e-04
Identity = 22/70 (31.43%), Postives = 34/70 (48.57%), Query Frame = 0


Query: 93  LIPDRKFYFDLIGILCGAERASYALELFEKMKRSSLGGYSPVYDVLIPKLCRGGDFEMGR 152
           L PD   Y  +IG+LC A R   A+E+FE ++++     +  Y+ +I      G F+   
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAY 328

Query: 153 QLWEEAMAMG 163
            L E   A G
Sbjct: 329 SLLERQRAKG 338

[Close]

BLAST of Csor.00g211610 vs. TAIR 10
Match: AT1G61870.1 (pentatricopeptide repeat 336 )

HSP 1 Score: 42.0 bits (97), Expect = 7.2e-04
Identity = 27/92 (29.35%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 70  RVMDSCKNEAL--TRRVGTGLWTTWLIPDRKFYFDLIGILCGAERASYALELFEKMKRSS 129
           R+   CK +     + +  G+ +  + P+   Y  LI   C  +    A +LF+ M    
Sbjct: 263 RIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRG 322

Query: 130 LGGYSPVYDVLIPKLCRGGDFEMGRQLWEEAM 160
               S  Y  LI  LC+GGDFE    L +E+M
Sbjct: 323 CKPDSECYFTLIYYLCKGGDFETALSLCKESM 354

The following BLAST results are available for this feature:

BLAST of Csor.00g211610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLJ6	3.5e-27	52.34	Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidop...	[more]
P0C8Q6	9.2e-04	36.78	Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS...	[more]

BLAST of Csor.00g211610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587555.1	4.13e-154	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7021531.1	3.68e-88	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG6589519.1	3.42e-43	59.46	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022921576.1	3.42e-43	59.46	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ...	[more]
XP_023516447.1	9.33e-43	58.78	pentatricopeptide repeat-containing protein At5g61370, mitochondrial [Cucurbita ...	[more]

BLAST of Csor.00g211610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1S0	1.66e-43	59.46	pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit...	[more]
A0A6J1BYQ1	1.20e-41	57.72	pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Momordic...	[more]
A0A6J1JIV3	2.49e-41	57.43	pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Cucurbit...	[more]
A0A0A0LPF4	8.36e-40	59.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009920 PE=4 SV=1	[more]
A0A5A7US52	2.24e-39	55.32	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Csor.00g211610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61370.1	2.5e-28	52.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G08310.1	6.6e-05	36.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G11630.1	1.5e-04	30.21	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G06920.1	4.2e-04	31.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G61870.1	7.2e-04	29.35	pentatricopeptide repeat 336	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 179..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..216
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 18..84 coord: 93..194
None	No IPR available	PANTHER	PTHR47938:SF9	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL	coord: 18..84 coord: 93..194
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 134..165 e-value: 9.5E-4 score: 17.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 55..162 e-value: 2.5E-7 score: 32.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g211610.m01	Csor.00g211610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding