Csor.00g210180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g210180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein 38 isoform X1
Location	Csor_Chr09: 9814242 .. 9818330 (-)
RNA-Seq Expression	Csor.00g210180
Synteny	Csor.00g210180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTAATCATCTTCTTCTAATTTCTCCATCTTGTTGTTCTTCTTCATGTTCTTCTTCCATTTACTCTTTTCCTTTTTCGATTTTAGGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAACACGGTATATTCACGTTTCTATACTCAGATCTATTGATTTTGATATTGCATGATATTGTCTACTTTGAATATAAAGCTCTCGTGACTTTACTTTTAGTTTTATCGAGATAGTGTTTGTTACTGTGAGATCCCACATCAGTTGAAGAGGAGAACGAAACACCTTTTATTAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAATACCTTGAAGGTAAGCCCAAAAGGGAAAGCCCAAAGAGAACAGTATCTGCTAGCGGTGACTTTAAATACCCTTTATAAGGACAAGGAAACCTCTCTCTAGCAGATGCGTTTTGGTAAACCCGAAAGGGAAAGCCCGAGATAGTGTCTGTTATTGTAAGATCTCACACTCTCGATAAGGGTTTGGAAACCTCTCTCTAGTAGACGCGTTTTAAAAGCTTTGAGGGTAAACTCAAAAAGGACAATATCTCCTAGCGGTGAGCTTAGATCGTTACATTAACTTGTATACTTACGATGATTTAGATGTTTGTTTATGTGTTTAATTTTGTGTTTAAAGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTCTCTCTCTACAACGTGACTTGCCAACTCATATATTCACTTTAATTTATGACTAAGAATAAAGTTTTTATTTTTGCTTCATAATTACTCTAAATTAATTGATATCATTTCCTATATTCATATAATGCATTAAATTCTCCTTTCCTTTTGTTCTTTCCATTCCTTTGTATTAATGCATGCATGGGATTGCATGGATTTGTGAATAATTGGGTAATTGTTAATATCGTTGCTTGTTTAGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGGTTCGTACAAACCTTTCTTGTTCTTCAGATTATTTTCAGTTTTGAGTATTATTGTTAGGAATGACGACTCTCCACAGTGGTATGATATTTTCCACTTTGAGCTTAAGCTCTCGTGGGTTTGCTTTGGACTTTCTAAAGACCTCGTATCGATGGAGATATATTTCTTACGTATAAATCCATGATCAATTTTGTGAGATCCCACATCGATTGGGGAGGAAAACGAAACACCGTTTCTAAGGGTGTGGAAACCTTTCCTTAGCAAACGTGTTTTAAAAACCTTGAGGAAAAACCCAAAAGGGAAAACCCTAAGAGAAAAATATCTGCTAGCGGTGTGCTTGAGCTGTTATAAATGGTATCAAAGCCAGACACTGAGCGATGTGCCAGCAAAGAGGCTGAGCTCCGAAGGGGTGGACACTAGGCAATGTGTCAACAAGAATGTTGGCCCTAAAGGGGTGGATTGAATGGGTCCTACATTGATTGGAGAAGGGGATGAGTGTCAGCGAGAACGTTGGGCCCCGAAGGTCCCACATTGATTGGAGAAGGGAATGGGTGCCAGCGAAGACGTTGGGTCCTGAAAGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGAGAACGAGACACCCTTTATAAGGGTGTAGAAACCATTTCTTATCAAACCCGTTTTCAAAACCTTAAGGGAAAACCCAAAAGGAAAATCTCAAAGAGAACAATATTTCCTAGCGGTGTGCTTGAACTGTTACAATTCCTTAAATTAGCTAATGTGAGATTGCATCCCGACAATCTTTAACCATCATGAAATTCACAAAGAATAGTTGAAGTAATGGAATGGAATAAATATTTAAGAAGAAAAAAGAAACAAAAAAAAATTAAAAGGGTTTTGAATAAGGACGGTAAAATTTTAATATTCCTTAGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAGTGAAAGTTAAAAGAGACCAAATCAGTGCTTCCTTCTCTTGTCGTTTGACCCGACAGTTTTTGTTTCTACATTTATTATTTTGTAACAGTAAATCACTTTTTTTACAGTTTTTTTTTTATGGTTTTATTGTTACGGTTTTTGTTACACGTTCTTTCATGCATGTAATCATGTAAGTTCAAATTAAAAAATGATGTCATTTATAACAACCCAATCACACCGCTAGCAGATATTGTCCTCTTTGGAATTTTCTTTCCAAGCTTCCCCTCAAAATTTTAAAACGCGTCGGTTAGAAAGATGTTGCCACACATTTATAAAGAATGTTTCGTTCTCATTCTCAACGATGTGGGATCTCACACTATCAGAGTTGTGTTGAGTTGGGAAAATCTTTTGGATTTGGGTTGGTTAGATTGATGGCTCGATTAACCTAAATACAACTTACAACCGAACCCCAAATTGGGTTGAGGCTGGGTTGACGGATTTTTTTAAATTATTTAAAAAAATTTTGTTTCTTCACCGTGCATATTACATTAATAACTAAAATTTCATAAATTTAAAATATCAAACATTTACAAGCGTCAAATATTTTTTGTCTCAAAAAATTTAACCTAAACGGTAAAAAGAAAATTATAATTCAACCCGACCTTTATTATATTATTATTTATACTAGGGGTTTTTTTTAATTAATTTCCAGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACAGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAACAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCGTTCGATTAGTTTAAAACAATTATATTCATCTTCGTAAATAAAAATAAAATAAATAAAATAATTATCAAACGAACTAATTGTTAAGAATATTTAGCCTTCTATTATAGTTTAGGTTAAAAATGAAGCTATGATACCATGTTAAGAATGAGAAACTCTAATACTATGTTAAGAATAATGTTCTGATACCATGTTAATAATGAGAAGCTCTGATACATGTTAAGAGGTATCATAAGAATGATGCTCATGCTCTTATACCATGTTAAAAATGAGAAGCTCTGATATCATGCTAAGAATGTTGTTCTGATACCATGTTAAGAATGATACTCTGATACCATGTTAAGAATGAGAAACAAAAGTGAGATTGAAAGTTCGAGAAACATTAGATGGGATCGAAAGTCCAAGAAAGTGGGATCGAAAGTAAGGTGAAATAAGAGAAAATATTCTACTAATGAAATCCAGAAGATAAGATAAATAGTTTATCATAATTACATATTTGACCTTTTATCATATTTGCCCTCCTTATTTCCATTTCGTTGGTAATTTATTTGATGATTATAAATAGAGAATTTTCACCACTGTTTTAGGTGGGTAGTTTTAGCAAATATTCTCACTAATATCTTTGTATCTTTGACAGTGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAA

mRNA sequence

ATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAACACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACAGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAACAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAA

Coding sequence (CDS)

ATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAACACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACAGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAACAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAA

Protein sequence

MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR

Homology

[Close]

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.0e-27
Identity = 89/239 (37.24%), Postives = 120/239 (50.21%), Query Frame = 0


Query: 2   TPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+T K+ M ++F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFR 121
           VTF++  AA RAC D+ P+I+GRRANCNLASLG  R + S      ++    G       
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLG-GRLRKSPTMTSPQQGPKNGNRATPPH 122

Query: 122 VLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNV---YG 181
           V +  Q  +     +  H          HQ +P+  YGY S    Y  P   +N    Y 
Sbjct: 123 VGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPS---AYVAPNMTFNQKVGYV 182

Query: 182 GAT-------------------AQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGG 219
           G T                     Y  +  G G ++ GAA+    FY  + + +    G
Sbjct: 183 GGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIG 229

[Close]

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-24
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
          DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-23
Identity = 84/208 (40.38%), Postives = 100/208 (48.08%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFRVLSSFQTGFG 131
           RAC D  P+IDGR+AN NLA LG   +KP                        S QTGF 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP-----------------------RSIQTGFT 126

Query: 132 GNVGS---AFHSTP--TFPHYAIHQGIPYNLYGYSSYSPDYAYPT------SYYNVYGGA 191
             V     AF   P    PHY   Q I           P    PT      S Y  Y  A
Sbjct: 127 IGVQQLHPAFIQRPFGLTPHYVYPQAI---------IQPSVVIPTPVQSIASPYIDYTAA 179

Query: 192 TAQYPMYSTGPGGILSGAAAAAAAFYPY 209
           +  Y  Y+T        AA+ AA F  Y
Sbjct: 187 SQAYSQYTTAAYDQYPYAASPAAGFVGY 179

[Close]

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 84/217 (38.71%), Postives = 108/217 (49.77%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++ YFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASL-------------GVQRSKPS-------TPKHEKKKWE 131
           RAC D  P+IDGR+AN NLA L             GVQ+  P+        P H      
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYPQA 126

Query: 132 LTGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPT 191
               G     +    QT          +++  +  YA      Y+ Y Y++      Y T
Sbjct: 127 YVQQG---LVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQYPYAASPATTGYVT 186

Query: 192 SYYNVYGGATAQYPMYSTGPGGILSGAAAAAAAFYPY 209
           +    YG A  Q P+ +  PG     AAAAAAAF  Y
Sbjct: 187 A--AGYGYAVPQ-PLTAATPG----TAAAAAAAFAQY 213

[Close]

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-22
Identity = 89/229 (38.86%), Postives = 113/229 (49.34%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTTYTK+FVGGL + T   +++ YFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFRVLSSFQTGFG 131
           RAC D  P+IDGR+AN NLA LG   +KP                    R++   Q GF 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP--------------------RIM---QPGFA 126

Query: 132 GNVGSAFHSTPTFPHYAIHQ---GIP-YNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMY 191
             V           H A+ Q   GIP + +Y  +   P    P         +T  Y  Y
Sbjct: 127 FGVQQL--------HPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDY 186

Query: 192 STGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYP 237
           +       S AAAAAAA   Y Q+   +   A G+    G  GY VQ P
Sbjct: 187 TGAAYAQYSAAAAAAAAAAAYDQYPYAASPAAAGYVTAGG-YGYAVQQP 200

[Close]

BLAST of Csor.00g210180 vs. NCBI nr
Match: KAG6592286.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 575 bits (1481), Expect = 8.41e-207
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286

[Close]

BLAST of Csor.00g210180 vs. NCBI nr
Match: XP_022930178.1 (RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-binding protein 38 isoform X1 [Cucurbita maxima])

HSP 1 Score: 568 bits (1465), Expect = 2.40e-204
Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG-RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240
           ATAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240

Query: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Csor.00g210180 vs. NCBI nr
Match: XP_023535742.1 (RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 565 bits (1456), Expect = 5.25e-203
Identity = 283/286 (98.95%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSN+ASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGG RNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGG-RNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 285

[Close]

BLAST of Csor.00g210180 vs. NCBI nr
Match: XP_022930182.1 (RNA-binding protein 38 isoform X4 [Cucurbita moschata] >XP_022974077.1 RNA-binding protein 38 isoform X4 [Cucurbita maxima])

HSP 1 Score: 548 bits (1412), Expect = 2.07e-196
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 278

[Close]

BLAST of Csor.00g210180 vs. NCBI nr
Match: XP_022930181.1 (RNA-binding protein 24 isoform X3 [Cucurbita moschata] >XP_022974076.1 RNA-binding protein 24 isoform X3 [Cucurbita maxima])

HSP 1 Score: 548 bits (1411), Expect = 3.05e-196
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHG-------GGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 279

[Close]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL
Match: A0A6J1IGG9 (RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 568 bits (1465), Expect = 1.16e-204
Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG-RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240
           ATAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240

Query: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL
Match: A0A6J1EUB1 (RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 568 bits (1465), Expect = 1.16e-204
Identity = 285/287 (99.30%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG-RN 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGG RN
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180
           FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG
Sbjct: 121 FRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGG 180

Query: 181 ATAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240
           ATAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL
Sbjct: 181 ATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHL 240

Query: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 LQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 287

[Close]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL
Match: A0A6J1I999 (RNA-binding protein 38 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 548 bits (1412), Expect = 1.00e-196
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 278

[Close]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL
Match: A0A6J1EPN4 (RNA-binding protein 38 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111436682 PE=4 SV=1)

HSP 1 Score: 548 bits (1412), Expect = 1.00e-196
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 278

[Close]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL
Match: A0A6J1IAD7 (RNA-binding protein 24 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE=4 SV=1)

HSP 1 Score: 548 bits (1411), Expect = 1.48e-196
Identity = 277/286 (96.85%), Postives = 277/286 (96.85%), Query Frame = 0


Query: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNF 120
           FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGRNF
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHG-------GGGGRNF 120

Query: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180
           RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA
Sbjct: 121 RVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGA 180

Query: 181 TAQYPMYSTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240
           TAQYPMY TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL
Sbjct: 181 TAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLL 240

Query: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 286
           QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR
Sbjct: 241 QYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGVTMALPTPIPHR 279

[Close]

BLAST of Csor.00g210180 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 254.2 bits (648), Expect = 1.2e-67
Identity = 153/271 (56.46%), Postives = 184/271 (67.90%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFRVLSSFQTGFG 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H          GGR  +V S F+T F 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHV-------GGRGMKVTSPFKTHF- 122

Query: 132 GNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYSTG 191
           G   +A  S   F HY     +PY N +G+SSYS DY YPTSYYNVYGGATAQ+PMY +G
Sbjct: 123 GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSG 182

Query: 192 PGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNST 251
           P  +   AAA AA FYPY QF EG+G             GY  + YP+H+  YSA   + 
Sbjct: 183 P--MTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAPGGNY 242

Query: 252 PTTFPQHYAAPPMSLPPTPPTLPSGVTMALP 281
           P     H+   P+SL P+ P +PS V  A+P
Sbjct: 243 P-----HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of Csor.00g210180 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 3.0e-66
Identity = 153/272 (56.25%), Postives = 184/272 (67.65%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAM 71
           DTT+TKVFVGGLAWET K +++NYFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGRNFRVLSSFQTGFG 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H          GGR  +V S F+T F 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHV-------GGRGMKVTSPFKTHF- 122

Query: 132 GNVGSAFHSTPTFPHYAIHQGIPY-NLYGYSSYSPDYAYPT-SYYNVYGGATAQYPMYST 191
           G   +A  S   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+PMY +
Sbjct: 123 GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGS 182

Query: 192 GPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYG-VQYPHHLLQYSAALNS 251
           GP  +   AAA AA FYPY QF EG+G             GY  + YP+H+  YSA   +
Sbjct: 183 GP--MTGVAAAPAAGFYPYLQFAEGNG----------PVTGYAPLHYPNHMFHYSAPGGN 242

Query: 252 TPTTFPQHYAAPPMSLPPTPPTLPSGVTMALP 281
            P     H+   P+SL P+ P +PS V  A+P
Sbjct: 243 YP-----HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Csor.00g210180 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-59
Identity = 145/261 (55.56%), Postives = 166/261 (63.60%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGR--NFRV-LSSFQ 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H        GGGGR  N RV +S+ Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 TGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYP 190
           TGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY 
Sbjct: 128 TGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYG 187

Query: 191 MYS--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYS 250
           +Y      GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+
Sbjct: 188 VYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYN 232

Query: 251 AALNSTPTTFPQHYAAPPMSL 265
                     P HY+ P  S+
Sbjct: 248 ----------PHHYSPPTFSM 232

[Close]

BLAST of Csor.00g210180 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 224.9 bits (572), Expect = 8.0e-59
Identity = 149/276 (53.99%), Postives = 171/276 (61.96%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGR--NFRV-LSSFQ 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H        GGGGR  N RV +S+ Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 TGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYP 190
           TGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY 
Sbjct: 128 TGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYG 187

Query: 191 MYS--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYS 250
           +Y      GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+
Sbjct: 188 VYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYN 247

Query: 251 AALNSTPTTFPQHYAAPPMSL-------PPTPPTLP 273
                     P HY+ P  S+       P  PP +P
Sbjct: 248 ----------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Csor.00g210180 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.6 bits (566), Expect = 4.0e-58
Identity = 148/269 (55.02%), Postives = 170/269 (63.20%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWET K+TMK +FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  MRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGR--NFRV-LSSFQ 130
             ACVDA PVIDGRRANCNLASLG+QRSKPSTP H        GGGGR  N RV +S+ Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 TGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDY-AYPTSYYNVYGGAT-AQYP 190
           TGFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY 
Sbjct: 128 TGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYG 187

Query: 191 MYS--TGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYS 250
           +Y      GG L+ AAA+A  FYP        GGG  G      Q  Y     HHL  Y+
Sbjct: 188 VYGNRNSGGGGLTAAAASATPFYP-------CGGGHGGVQFSQPQPFY-----HHLSSYN 247

Query: 251 AALNSTPTTFPQHYAAPPMSLPPTPPTLP 273
               S PT   Q  +   +S   T  +LP
Sbjct: 248 PHHYSPPTFSMQQGSRNRLSASTTSYSLP 250

The following BLAST results are available for this feature:

BLAST of Csor.00g210180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.0e-27	37.24	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZMA3	4.8e-24	62.35	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
Q5ZJX4	6.9e-23	40.38	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q9I8B3	1.2e-22	38.71	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q9BX46	2.0e-22	38.86	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]

BLAST of Csor.00g210180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592286.1	8.41e-207	100.00	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930178.1	2.40e-204	99.30	RNA-binding protein 38 isoform X1 [Cucurbita moschata] >XP_022974074.1 RNA-bindi...	[more]
XP_023535742.1	5.25e-203	98.95	RNA-binding protein 38-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022930182.1	2.07e-196	96.85	RNA-binding protein 38 isoform X4 [Cucurbita moschata] >XP_022974077.1 RNA-bindi...	[more]
XP_022930181.1	3.05e-196	96.85	RNA-binding protein 24 isoform X3 [Cucurbita moschata] >XP_022974076.1 RNA-bindi...	[more]

BLAST of Csor.00g210180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IGG9	1.16e-204	99.30	RNA-binding protein 38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EUB1	1.16e-204	99.30	RNA-binding protein 38 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A6J1I999	1.00e-196	96.85	RNA-binding protein 38 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]
A0A6J1EPN4	1.00e-196	96.85	RNA-binding protein 38 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111436682 ...	[more]
A0A6J1IAD7	1.48e-196	96.85	RNA-binding protein 24 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472695 PE...	[more]

BLAST of Csor.00g210180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	1.2e-67	56.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	3.0e-66	56.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	2.7e-59	55.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	8.0e-59	53.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	4.0e-58	55.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 9.9E-22 score: 88.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 1.9E-15 score: 56.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.670687
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..109 e-value: 3.0E-23 score: 84.3
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..280
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 3.48788E-42 score: 137.747
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g210180.m03	Csor.00g210180.m03	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding