Csor.00g209040 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g209040
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 8400373 .. 8401195 (+)
RNA-Seq ExpressionCsor.00g209040
SyntenyCsor.00g209040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGATTACCAGGATTATAGCAAGATGTCTTATAAAGAGTATGTTCCGACTTCTAGGATCATAGCAACATGTCTTGTAAGGAGTATGTTCGATTACCAGGATCATAGCAAGATGTCTTATAAAGAGTATGTTCCGACTTCTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCATTGCTAGGATCATAGCAACATGTCTGGTAAGGTGCTGGATCATAGCAACATGTCTGGTAAGGTGCTGGTAAGGAGCATGTCTTGTAAAGAGTATGTTTTGTTGCTGGGTTCATAGCAACATGTCTTGTAAGGAGTATGTGTTGTTGCTGGGATCATAGCGACATGTCTTGTAAGGAGTATGTTCGACTGCTGGGATCATAGCAACATGTCTTAAAAGGAGCATGTTCGATTACATGTCTTATAAGGAGCATGTTCGACTGTTGGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCAACTGCTGGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGACTACTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCACTGCTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCACTGCTAG

mRNA sequence

ATGTTCGATTACCAGGATTATAGCAAGATGTCTTATAAAGAGTATGTTCCGACTTCTAGGATCATAGCAACATGTCTTGATCATAGCAACATGTCTGGTAAGGTGCTGGATCATAGCAACATGTCTGGTAAGGTGCTGGTAAGGAGCATGTCTTGTAAAGAGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCACTGCTAG

Coding sequence (CDS)

ATGTTCGATTACCAGGATTATAGCAAGATGTCTTATAAAGAGTATGTTCCGACTTCTAGGATCATAGCAACATGTCTTGATCATAGCAACATGTCTGGTAAGGTGCTGGATCATAGCAACATGTCTGGTAAGGTGCTGGTAAGGAGCATGTCTTGTAAAGAGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTGTAAGGAGCATGTTCGATTGCTATTCGACTGCTAGGATCATAGCAACATGTCTTATAAGGAGTATGTTCCACTGCTAG

Protein sequence

MFDYQDYSKMSYKEYVPTSRIIATCLDHSNMSGKVLDHSNMSGKVLVRSMSCKEIIATCLVRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLIRSMFHC
Homology
[Close]
BLAST of Csor.00g209040 vs. NCBI nr
Match: KAG6599122.1 (hypothetical protein SDJN03_08900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (606), Expect = 7.56e-79
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MFDYQDYSKMSYKEYVPTSRIIATCLDHSNMSGKVLDHSNMSGKVLVRSMSCKEIIATCL 60
           MFDYQDYSKMSYKEYVPTSRIIATCLDHSNMSGKVLDHSNMSGKVLVRSMSCKEIIATCL
Sbjct: 1   MFDYQDYSKMSYKEYVPTSRIIATCLDHSNMSGKVLDHSNMSGKVLVRSMSCKEIIATCL 60

Query: 61  VRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLIRSMFH 120
           VRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLIRSMFH
Sbjct: 61  VRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLVRSMFDCYSTARIIATCLIRSMFH 120

[Close]
BLAST of Csor.00g209040 vs. NCBI nr
Match: KAG7030061.1 (Copper transporter 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 49.7 bits (117), Expect = 4.46e-04
Identity = 27/42 (64.29%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 3   DYQDYSKMSYKEYVPTSRIIATCLDHSNMSGKVLDHSNMSGK 44
           D+ D+SKMSYKEYVPTSRIIATC   S    +  DHS MS K
Sbjct: 206 DFSDHSKMSYKEYVPTSRIIATCPVRSMFDYQ--DHSKMSYK 245

The following BLAST results are available for this feature:
BLAST of Csor.00g209040 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g209040 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599122.17.56e-79100.00hypothetical protein SDJN03_08900, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030061.14.46e-0464.29Copper transporter 5, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Csor.00g209040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g209040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g209040.m01Csor.00g209040.m01mRNA