Csor.00g208580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g208580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	Csor_Chr05: 7999561 .. 8000349 (+)
RNA-Seq Expression	Csor.00g208580
Synteny	Csor.00g208580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTTATTCTCCTTCTTGTAAGGCCATGGCTGTTATGGGGTTTATTTGGCTTTTGTTAGTGAATGGTTCCCATCAACGGGGACAATCGGTGGCAACCGGGATGACGACGACAACGACGGCAGCTCAATTCGGTGGAATTTCTAAAGAGATGGAGGTGGTCGGTGGTCGTGGTGGCAAGGACGTTGTTCGTTCAGAATGGCATCTCAACTACATGAGTAAAAGAAGAGTTCCTAATGGCCCTGATCCTATTCATAACAGGTATTACGTTTACGTTGTTTGAATTTTTAATAAAATTATATGTCTTAATCAATTGAGCTACTTTAATTCAGCTCGTAAAACATGACATGGGTGTTGTATGTCGTGTTTTTATATTTGAATTGGATAGATTTAGAGAAAGAAAGAGAGGGAGAGATAAAAAAAAAGTTTAAATTTTTCTCACTTTGCCTTTTAAAACTGTTACATTGAGTTGTTTTAGCTTAAAGGGTGTCATTTAAAGTCCTTGGTTGAAGGTGACACAAACATCTTTAAAACCACAGTAAATAAAAGGTGTATATGTGTGTACTTCAATATATTCCATGCCTTTTACTTAATCGATATCTCTTTATCCATTACTAATACTCGTTCTTTAAGTTTCGAGTATCCGTTCAATACTCGATGATTCAGCTCCGTTCTACAATCGTTAACCTCCCGAAAATCGAAAAACCACTCAAGACTTAAAACTTTTTTTGGTTTTTCGTTTTGTAGGAGAGCAGGAAACTCTGGAAGACCACCCGGCAAGGCTTAA

mRNA sequence

ATGAGTTCTTATTCTCCTTCTTGTAAGGCCATGGCTGTTATGGGGTTTATTTGGCTTTTGTTAGTGAATGGTTCCCATCAACGGGGACAATCGGTGGCAACCGGGATGACGACGACAACGACGGCAGCTCAATTCGGTGGAATTTCTAAAGAGATGGAGGTGGTCGGTGGTCGTGGTGGCAAGGACGTTGTTCGTTCAGAATGGCATCTCAACTACATGAGTAAAAGAAGAGTTCCTAATGGCCCTGATCCTATTCATAACAGGAGAGCAGGAAACTCTGGAAGACCACCCGGCAAGGCTTAA

Coding sequence (CDS)

ATGAGTTCTTATTCTCCTTCTTGTAAGGCCATGGCTGTTATGGGGTTTATTTGGCTTTTGTTAGTGAATGGTTCCCATCAACGGGGACAATCGGTGGCAACCGGGATGACGACGACAACGACGGCAGCTCAATTCGGTGGAATTTCTAAAGAGATGGAGGTGGTCGGTGGTCGTGGTGGCAAGGACGTTGTTCGTTCAGAATGGCATCTCAACTACATGAGTAAAAGAAGAGTTCCTAATGGCCCTGATCCTATTCATAACAGGAGAGCAGGAAACTCTGGAAGACCACCCGGCAAGGCTTAA

Protein sequence

MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA

Homology

[Close]

BLAST of Csor.00g208580 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 60 GKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPP 98
          GKDV     +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 47 GKDV-----NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Csor.00g208580 vs. NCBI nr
Match: XP_022946527.1 (uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (523), Expect = 7.39e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60

Query: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Csor.00g208580 vs. NCBI nr
Match: XP_023521565.1 (uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055.1 uncharacterized protein LOC111805292 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201 bits (511), Expect = 5.01e-65
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGM T TTAAQFGGISKEMEVVGGRGG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMMTITTAAQFGGISKEMEVVGGRGG 60

Query: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Csor.00g208580 vs. NCBI nr
Match: XP_022999782.1 (uncharacterized protein LOC111494028 [Cucurbita maxima])

HSP 1 Score: 199 bits (506), Expect = 2.90e-64
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGM TT TAAQFGGISKEMEVVGGRGG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVVGGRGG 60

Query: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           KDVVRSEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  KDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Csor.00g208580 vs. NCBI nr
Match: KAG7030012.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (505), Expect = 4.39e-64
Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTT--AAQFGGISKEMEVVGGR 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTT  AAQFGGISKEMEVVGG 
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTTTAAQFGGISKEMEVVGGH 60

Query: 61  GGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           GGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 102

[Close]

BLAST of Csor.00g208580 vs. NCBI nr
Match: XP_038886261.1 (uncharacterized protein LOC120076488 [Benincasa hispida])

HSP 1 Score: 139 bits (351), Expect = 1.61e-40
Identity = 78/109 (71.56%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MSSYSPSCK---AMAVMGFIWLLLVNGSHQRGQSVATGMT------TTTTAAQFGGISKE 60
           MS YSPSCK   ++AVM FI+LLLVNGSHQR Q VA  M       T T  A+F GISKE
Sbjct: 1   MSCYSPSCKLGNSLAVMVFIFLLLVNGSHQRRQPVAAEMEKATVTITATMTAEFSGISKE 60

Query: 61  MEVVGGRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           M+VV G  GK VV  EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  MKVVHGGRGK-VVHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 108

[Close]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL
Match: A0A6J1G3Y8 (uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC111450563 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 3.58e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60

Query: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL
Match: A0A6J1KBR7 (uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 1.40e-64
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGG 60
           MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGM TT TAAQFGGISKEMEVVGGRGG
Sbjct: 1   MSSYSPSCKAMAVMGFIWLLLVNGSHQRGQSVATGMGTTMTAAQFGGISKEMEVVGGRGG 60

Query: 61  KDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           KDVVRSEWHLNY+SKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  KDVVRSEWHLNYVSKRRVPNGPDPIHNRRAGNSGRPPGKA 100

[Close]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL
Match: A0A0A0KJ25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1)

HSP 1 Score: 132 bits (333), Expect = 3.82e-38
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MSSYSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVV--G 60
           M+ Y  SCK  ++ +M FIWLLL NGS QR + V  G  TT T  +  GISKE  V   G
Sbjct: 1   MTCYCSSCKFGSLLLMAFIWLLLANGSCQRKEPVVVGKVTTATGDEISGISKETTVAVGG 60

Query: 61  GRGGKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
           GRGGK V   EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 61  GRGGKVVDHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 104

[Close]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL
Match: A0A5A7TRB3 (Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00170 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.37e-33
Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 4   YSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGK 63
           +  SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK
Sbjct: 6   WCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGK 65

Query: 64  DVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
                EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 66  VADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL
Match: A0A1S3CMA2 (uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.37e-33
Identity = 63/99 (63.64%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 4   YSPSCK--AMAVMGFIWLLLVNGSHQRGQSVATGMTTTTTAAQFGGISKEMEVVGGRGGK 63
           +  SCK  ++ VM FIWLLL NGS QR + V  G  TT    +F G+ K+  VV G GGK
Sbjct: 6   WCSSCKFGSLLVMAFIWLLLANGSCQRKEPVVVGKVTTAMGDEFSGVFKKTTVVVG-GGK 65

Query: 64  DVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 100
                EWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA
Sbjct: 66  VADHPEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPPGKA 103

[Close]

BLAST of Csor.00g208580 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 70  LNYM-SKRRVPNGPDPIHNRRAGNSGRPPGKA 101
           L+Y+ SKR+VP GPDPIHNRRAGNS RPPG+A
Sbjct: 71  LSYVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

[Close]

BLAST of Csor.00g208580 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 47.4 bits (111), Expect = 8.0e-06
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 0


Query: 60 GKDVVRSEWHLNYMSKRRVPNGPDPIHNRRAGNSGRPP 98
          GKDV     +L ++SKR+VPNGPDPIHNR+A  S RPP
Sbjct: 47 GKDV-----NLFHVSKRKVPNGPDPIHNRKAETSRRPP 79

The following BLAST results are available for this feature:

BLAST of Csor.00g208580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	1.1e-04	63.16	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Csor.00g208580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946527.1	7.39e-67	100.00	uncharacterized protein LOC111450563 [Cucurbita moschata] >KAG6599076.1 CLAVATA3...	[more]
XP_023521565.1	5.01e-65	98.00	uncharacterized protein LOC111785387 [Cucurbita pepo subsp. pepo] >XP_023546055....	[more]
XP_022999782.1	2.90e-64	97.00	uncharacterized protein LOC111494028 [Cucurbita maxima]	[more]
KAG7030012.1	4.39e-64	97.06	CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038886261.1	1.61e-40	71.56	uncharacterized protein LOC120076488 [Benincasa hispida]	[more]

BLAST of Csor.00g208580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3Y8	3.58e-67	100.00	uncharacterized protein LOC111450563 OS=Cucurbita moschata OX=3662 GN=LOC1114505...	[more]
A0A6J1KBR7	1.40e-64	97.00	uncharacterized protein LOC111494028 OS=Cucurbita maxima OX=3661 GN=LOC111494028...	[more]
A0A0A0KJ25	3.82e-38	66.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G402550 PE=4 SV=1	[more]
A0A5A7TRB3	1.37e-33	63.64	Clavata3/esr-related 26, putative isoform 1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CMA2	1.37e-33	63.64	uncharacterized protein LOC103502597 OS=Cucumis melo OX=3656 GN=LOC103502597 PE=...	[more]

BLAST of Csor.00g208580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69970.2	2.5e-07	78.13	CLAVATA3/ESR-RELATED 26	[more]
AT3G28455.1	8.0e-06	63.16	CLAVATA3/ESR-RELATED 25	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..100
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 8..100
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g208580.m01	Csor.00g208580.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment