Csor.00g208400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g208400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpolyamine-modulated factor 1-binding protein 1
LocationCsor_Chr05: 7841346 .. 7841630 (-)
RNA-Seq ExpressionCsor.00g208400
SyntenyCsor.00g208400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTAGAGAGTGGGAGATTGAAAGATGAGAATAATGGACTTGTGTTGAAAGTTAAGAAAGAAAGGGAGAAATGGATGAAGGTGTGTTGTGAGAGGGATGAAGTCAAGTCTAATTCTGATGGATTGTTTGAGGAAATAGGAAATTTGAGAAACAAAATGATTGAAATGGAGAATGAGAAAAGAGTTTTGGAAGAGACAGAATTTGAAGGTGAAATGCTTGGAATCTATTGA

mRNA sequence

ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTAGAGAGTGGGAGATTGAAAGATGAGAATAATGGACTTGTGTTGAAAGTTAAGAAAGAAAGGGAGAAATGGATGAAGGTGTGTTGTGAGAGGGATGAAGTCAAGTCTAATTCTGATGGATTGTTTGAGGAAATAGGAAATTTGAGAAACAAAATGATTGAAATGGAGAATGAGAAAAGAGTTTTGGAAGAGACAGAATTTGAAGGTGAAATGCTTGGAATCTATTGA

Coding sequence (CDS)

ATGGATGAAGTGGGAGATAGGATTTGTAGGTTAGTTGAGAGTGAGAGATTGAAGAATGTAGAGAGTGGGAGATTGAAAGATGAGAATAATGGACTTGTGTTGAAAGTTAAGAAAGAAAGGGAGAAATGGATGAAGGTGTGTTGTGAGAGGGATGAAGTCAAGTCTAATTCTGATGGATTGTTTGAGGAAATAGGAAATTTGAGAAACAAAATGATTGAAATGGAGAATGAGAAAAGAGTTTTGGAAGAGACAGAATTTGAAGGTGAAATGCTTGGAATCTATTGA

Protein sequence

MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGLFEEIGNLRNKMIEMENEKRVLEETEFEGEMLGIY
Homology
BLAST of Csor.00g208400 vs. NCBI nr
Match: KAG6599058.1 (hypothetical protein SDJN03_08836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 1.18e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
          MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL
Sbjct: 1  MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60

Query: 61 FEEIGNLRNKMIEMENEKRVLEETEFEGEMLGIY 94
          FEEIGNLRNKMIEMENEKRVLEETEFEGEMLGIY
Sbjct: 61 FEEIGNLRNKMIEMENEKRVLEETEFEGEMLGIY 94

BLAST of Csor.00g208400 vs. NCBI nr
Match: KAG6590400.1 (hypothetical protein SDJN03_15823, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (349), Expect = 1.83e-40
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = 0

Query: 1  MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
          MDEVGDRICRLVESERLKNVE GRLKDENNGLV KV++EREKWMKVCCERDE+K+N DGL
Sbjct: 1  MDEVGDRICRLVESERLKNVEIGRLKDENNGLVFKVEEEREKWMKVCCERDEIKTNYDGL 60

Query: 61 FEEIGNLRNKMIEME-NEKRVLEETE 85
           EEIG LR KMIEME NE+R L+ETE
Sbjct: 61 LEEIGYLRKKMIEMEKNERRALKETE 86

BLAST of Csor.00g208400 vs. NCBI nr
Match: XP_022971789.1 (uncharacterized protein LOC111470467 [Cucurbita maxima])

HSP 1 Score: 133 bits (335), Expect = 1.12e-36
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           MDEVGDRICRLVESERLKNV+ GRLKDENNGLVLKV++EREKW+KVC ERDE++ N DGL
Sbjct: 16  MDEVGDRICRLVESERLKNVDIGRLKDENNGLVLKVEEEREKWLKVCWERDEIEDNYDGL 75

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETEF 86
           F+EI +LR KMIEME NEKR LEETE+
Sbjct: 76  FKEIRDLRKKMIEMEKNEKRDLEETEY 102

BLAST of Csor.00g208400 vs. NCBI nr
Match: XP_023524531.1 (uncharacterized protein LOC111788427 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135 bits (339), Expect = 1.55e-36
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 0

Query: 1  MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
          MDEVGDRICRL+ESERLKN + GRLKDENNGLVLKV++EREKW KVC ERD +K+NSDGL
Sbjct: 1  MDEVGDRICRLIESERLKNGKIGRLKDENNGLVLKVEEEREKWTKVCYERDGIKANSDGL 60

Query: 61 FEEIGNLRNKMIEME-NEKRVLEETE 85
          FEEIG+LR KMIEME NEKR LEETE
Sbjct: 61 FEEIGDLRKKMIEMEKNEKRALEETE 86

BLAST of Csor.00g208400 vs. NCBI nr
Match: KAG6571252.1 (hypothetical protein SDJN03_30167, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (305), Expect = 2.07e-33
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           MD VGDRICRL ESERLKNVE  RLKDENN LVLKV++EREKWM VCCERD +K+NS GL
Sbjct: 29  MDGVGDRICRLFESERLKNVEIERLKDENNALVLKVEEEREKWMNVCCERDGIKANSYGL 88

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETE 85
            EEIG+L  KMIEME NE+R LEE E
Sbjct: 89  LEEIGDLIKKMIEMEKNERRALEERE 114

BLAST of Csor.00g208400 vs. ExPASy TrEMBL
Match: A0A6J1I9J8 (uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 5.41e-37
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           MDEVGDRICRLVESERLKNV+ GRLKDENNGLVLKV++EREKW+KVC ERDE++ N DGL
Sbjct: 16  MDEVGDRICRLVESERLKNVDIGRLKDENNGLVLKVEEEREKWLKVCWERDEIEDNYDGL 75

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETEF 86
           F+EI +LR KMIEME NEKR LEETE+
Sbjct: 76  FKEIRDLRKKMIEMEKNEKRDLEETEY 102

BLAST of Csor.00g208400 vs. ExPASy TrEMBL
Match: A0A6J1I2X9 (protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 5.35e-33
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDG- 60
           M+EVGDRICRLVESERLKNVE  RLKD+NNGLVLKV++EREKWMKVCCERD +K+NSD  
Sbjct: 98  MNEVGDRICRLVESERLKNVEIERLKDKNNGLVLKVEEEREKWMKVCCERDGIKANSDDE 157

Query: 61  LFEEIGNLRNKMIEME-NEKRVLEETE 85
           LFEE  +LR KMIE+E NEKR LEE E
Sbjct: 158 LFEESRDLRKKMIELEKNEKRALEEIE 184

BLAST of Csor.00g208400 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 6.70e-31
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           M+E+G  ICRLVESER+KNVE GRLK ENNGLVLKV++EREKWMKVCCERD +K++ DGL
Sbjct: 118 MEEMGGVICRLVESERVKNVEIGRLKGENNGLVLKVEEEREKWMKVCCERDGIKADFDGL 177

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETE 85
           FEE G+LR KM+EME NE+R LEE E
Sbjct: 178 FEETGDLRRKMVEMEKNERRALEEIE 203

BLAST of Csor.00g208400 vs. ExPASy TrEMBL
Match: A0A6J1HKX2 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111465485 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 2.05e-28
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           M+E+G  ICRLVESER KNVE GRLK ENNGLVLK ++EREKWMKVC ERD +K++ DGL
Sbjct: 117 MEEMGGVICRLVESEREKNVEIGRLKGENNGLVLKAEEEREKWMKVCSERDGIKADFDGL 176

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETE 85
           FEE G+LR KM+EME NE+R LEE E
Sbjct: 177 FEETGDLRRKMVEMEKNERRALEEIE 202

BLAST of Csor.00g208400 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.43e-18
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 1   MDEVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGL 60
           ++E+   I  L+ESER+K +E   LK E NGLVL+V++EREKW  VCCERDE+K   DGL
Sbjct: 113 IEEMSGGIFGLLESERVKGLEIRNLKAEINGLVLEVEEEREKWRGVCCERDEIKVEFDGL 172

Query: 61  FEEIGNLRNKMIEME-NEKRVLEETE 85
            +E G+LR K++EME NE+R LEE +
Sbjct: 173 LKETGDLRGKVVEMERNERRTLEEID 198

BLAST of Csor.00g208400 vs. TAIR 10
Match: AT5G27330.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 3   EVGDRICRLVESERLKNVESGRLKDENNGLVLKVKKEREKWMKVCCERDEVKSNSDGLFE 62
           E+G  +  L + +  +  E   LK E NGL+ K++ ERE++ +VC ERD VKS  D   E
Sbjct: 127 EMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSE 186

Query: 63  EIGNLRNKMIEMENEKRVLEE 84
           E+  L+  ++ +E  +  L E
Sbjct: 187 EMNLLKESVVRLEMREVSLGE 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6599058.11.18e-58100.00hypothetical protein SDJN03_08836, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590400.11.83e-4083.72hypothetical protein SDJN03_15823, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022971789.11.12e-3680.46uncharacterized protein LOC111470467 [Cucurbita maxima][more]
XP_023524531.11.55e-3682.56uncharacterized protein LOC111788427 [Cucurbita pepo subsp. pepo][more]
KAG6571252.12.07e-3376.74hypothetical protein SDJN03_30167, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1I9J85.41e-3780.46uncharacterized protein LOC111470467 OS=Cucurbita maxima OX=3661 GN=LOC111470467... [more]
A0A6J1I2X95.35e-3378.16protein MNN4-like OS=Cucurbita maxima OX=3661 GN=LOC111470470 PE=4 SV=1[more]
A0A6J1FD806.70e-3174.42polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1HKX22.05e-2872.09polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A5D3D4893.43e-1855.81Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G27330.12.2e-0535.80Prefoldin chaperone subunit family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 57..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g208400.m01Csor.00g208400.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane