Csor.00g204080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g204080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 5348738 .. 5349088 (+)
RNA-Seq Expression	Csor.00g204080
Synteny	Csor.00g204080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGATCGGTTCCCGCACTTGTAGGATCATCTTCAACCTAAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGAAGGACCACCACCGCAGCGCTGAAAAGGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTGGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

mRNA sequence

ATGACGATGATCGGTTCCCGCACTTGTAGGATCATCTTCAACCTAAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGAAGGACCACCACCGCAGCGCTGAAAAGGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTGGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

Coding sequence (CDS)

ATGACGATGATCGGTTCCCGCACTTGTAGGATCATCTTCAACCTAAATCCAATTCATCCGCTCCTTGCTTGTAGCACTGTTAAGGGTCATTGGCCATCTCTTCTTGCTCGCCGCTATGACAAACCAAGAACAGACGAGAAGGACCACCACCGCAGCGCTGAAAAGGGCACTGATCACAGATCCAACACAGACAGAGCTCCGTCCATGGCTGAGGAGTTCAATAGGATCGCGGATGAAAAGCACCTGAAGGAGGCCCCTGGTCGGAGCTCCGACAAACAATCTGAAACCTCGCAAAAAACTGCGTCTGACCAGAATTTGGACGACGGGCCTAATTACCGCCCTTGTAGTTGA

Protein sequence

MTMIGSRTCRIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS

Homology

[Close]

BLAST of Csor.00g204080 vs. NCBI nr
Match: KAG6596946.1 (hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232 bits (592), Expect = 7.13e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTMIGSRTCRIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHR 60
           MTMIGSRTCRIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHR
Sbjct: 1   MTMIGSRTCRIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHR 60

Query: 61  SNTDRAPSMAEEFNRIADEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS 116
           SNTDRAPSMAEEFNRIADEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS
Sbjct: 61  SNTDRAPSMAEEFNRIADEKHLKEAPGRSSDKQSETSQKTASDQNLDDGPNYRPCS 116

[Close]

BLAST of Csor.00g204080 vs. NCBI nr
Match: KGN56105.1 (hypothetical protein Csa_009481 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 5.66e-07
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 32  PSLLARRYDKPRTDEKDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSD 91
           PSL  RRY KP  DE +H          RS  +RAPS AEEFNR+A EK  K+      D
Sbjct: 89  PSLFPRRYGKPSKDEAEH------SGGERSKAERAPSTAEEFNRMATEKQSKDHQEEEVD 148

Query: 92  ---------KQSETSQKTASDQN--LDDGPNYRPCS 116
                    K+SE + + + D N  ++ GPNYRPCS
Sbjct: 149 AVHGRDKFAKESEAAMEKSHDPNNHINKGPNYRPCS 178

[Close]

BLAST of Csor.00g204080 vs. ExPASy TrEMBL
Match: A0A0A0L2C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.74e-07
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 32  PSLLARRYDKPRTDEKDHHRSAEKGTDHRSNTDRAPSMAEEFNRIADEKHLKEAPGRSSD 91
           PSL  RRY KP  DE +H          RS  +RAPS AEEFNR+A EK  K+      D
Sbjct: 89  PSLFPRRYGKPSKDEAEH------SGGERSKAERAPSTAEEFNRMATEKQSKDHQEEEVD 148

Query: 92  ---------KQSETSQKTASDQN--LDDGPNYRPCS 116
                    K+SE + + + D N  ++ GPNYRPCS
Sbjct: 149 AVHGRDKFAKESEAAMEKSHDPNNHINKGPNYRPCS 178

The following BLAST results are available for this feature:

BLAST of Csor.00g204080 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g204080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596946.1	7.13e-77	100.00	hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56105.1	5.66e-07	42.71	hypothetical protein Csa_009481 [Cucumis sativus]	[more]

BLAST of Csor.00g204080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C8	2.74e-07	42.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1	[more]

BLAST of Csor.00g204080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g204080.m01	Csor.00g204080.m01	mRNA