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Csor.00g204010 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACACCTCCATCTCGCTCCCATTTCCCCTCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCCTCTTCCTCCACTTCCTCCGCCGCCGCCGCCGCCTTCCGCCACCACCACCACCACCATCATACCCCTTACGACCTCATCATGATGATGCCACGTGATACTCTCCCCGACTTCCGTTCCGATTCCGCTGCCACGCCCCCTGCCGTCGTCTCCACTCCAACAGCTCCCACCGCCTTCGAACTCGAAACTGCCTCACTCGCTGCCGACTGCGCCACGCCCCGATGGCCTCGCCAGGAAACTCTCACTCTCTTGGATATCAGATCTCGACTCGATTCTAAGTTCAAAGAAGCGAACCAAAAAGGACCCCTTTGGGATGAAGTTTCAAGGTATCTATTTATAATACCTTCATGTTCTTTAAAACTCCCTGATTCTTTCTTTTGGAGCATAAATTAAAACAAAACAAACAAACAAACATGTTCATTAATACACAACAAGTTCCGGAATTTGAGATTGGGTGTTCATTCTTTTTTTCCAATTTCGTGTCTCAAAAGAAGAAAAGTTTTTGATTTTTTTAACTTTTTTTTTAATTTTTTTAAAGAGGGTTTTCAGTTTGGTTTCCATGTTTTTAAATTTTTGAAAATGACCATACACTTTAAGTTTAAAGGAACCTCCACAGGTACCACCCCAAAAATAATATCGATGATGAAAGCGAGACGCTTGATACAACAAGGGGGGTGGGCGTTCCTAGCCAGTGCAGTAAATACAAAAGGAAAGGAAAAACCCATAGATACAGTACCCGTAGTAAACGAATTTATGAATGTCTTCCCGGAGGACCTCCCGGAAATTCCTCCATCGCAAGAGGTAGACTTTGGAATAGATCTGGAACCAGGAACGAGACCCATCTCTAAGGCCCTGTACCGCATGGCACCAGCAGAACTAAAAGAACTTAAAACACAACTGCAAGACCTACTAGATAAGGGCTTCATTCAACCCAGCGTGTCCCCTTGGGGTGCACCAGTGTTGTTTGTTAAAAAGAAAGACGATTAAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGACCGATAAAGAACAAATACCCGTTACCCCGTATTGAGGACCTATTTGATCAACTACGTGGGGCGACAGTGTTTTCTAAAATAGATCTTCGATCAGGATACCATCAAATGAAGATTAAAAATGAAGACATACCGAAAACAGCCTTTCGAACCAGATATGGCCACTACGAGTTTGTGGTGATGTCTTTTGGTCTCACCAATGCCCCAACGGTATTTATGGAACTAATGAACCGAGTATTGAAGGAGTGCCTAGACTCGTTTGTGATCGTGTTCATAGACGATATCCTGGTATACTCGAAAACGGACCTAGAACACCAAGAGCACCTTCGCAAAGCCTTAACTATCCTAAGAGAGAACAAGCTGTATGCCAAATTCACCAAGTGTGAATTTTGGCTACTCGTTTTTGGGGCACGTAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAAGCGGTCACGAAATGGAAACGCCCAACAACGGTCACCGAGATACGAAGTTTCTTGGGATTGGCGGGTTACTATCGAAGGTTTGTCCAGGACTTCGCTAGAATAGCCACGCCTCTCACCCAATTGACAAAAAAAAGGTGTACCTTTTGTTTGGGACGATACTTGTGAGGCCAGCTTTCAAGAACTAAAACAAAGACTGGTATCCGCCCCAGTGCTCACAGTTCCAGAAAGTTCTGTGGGATATGTGATTTACAGTGACGCGTCCAAAAAGGGATTAGGTTGTGTACTGATGCAACATACAAGGTGGTTGCGTATGCGTCACGCCAACTAAAAGATTACGAGAAAAACTATCCTACATATGATTTGGAGCTGGCAGCAGTCGTGTTCGCGTTCAAAATTTGGCAACACTACCTGTATGGCGAAAAGACCCAGATCCACACGGACCACAAAAGCCTAAAATATTTGTTCACCCAAAAAGAATTGAACATGAGGCAACGTAGATGGTTAGAGCTGGTAAAAAAGATCTATGCTCCCTAGCCAATCAACTTTCTTGCTTTCGGTGTAGAGACCACCTTAGTAATAGTCTTAGCTTTACACTTCTTAAAAGTTGAAGTTCTGAAAGAAGTTTGGGCTTGCAACTCTAGAATTAAGTCCACTCATATGCAAGATGAAAGCTCAAAAAATTTGGTGTCTAGGATGTCCATGAGACCATATGACAGTTCATCAAAATCATGTCTACTCATGTTAGACCTAAAATACCTCAAAATGTACTAGAGAGAGAGACATGATGTCAGCTCTCCACTACCCATGGGCCTTATGGCTTAAACAAACTACCCTATGGTACATACGTGTATCATAGTATGGGTGAGCATTGTAAGATGAGTGTCTTGAGTGATGTCCTTTAAAATTAGTTTTTCAAGGAGAGTGTGGGATGACACGGGTGTGCCAGCATTGTGCCTTCACCCATGTGTCAGAGGTTGGAATATGCACCCACAATCCAGTACGGTTTCCATAAATGACTTAGCATGGATAGGAGAAGGACCTTGCCTTGACAAAACTCGAATTGATGGTTGTTCAGAATGCTCCGATGACATGAATGACACATAGATTAGTTCTCGATAGACATGTCCGAGTAAGTTACGATAACCTAGATGACATCATGATATGAGGGCCATGTTGTTGGGAACCTAGATGATGAGATAAGATGCGATGATGCATATGAGAGACTTTAACCTAGAGTAGAGGTAAGGTCGAGCCGAATAACTTGGCCTAGTGTAGAGGCAAGTAAGATAAAGTCGCTGACGGTTGAACATGCACGCACGGGCAGTGTGTATGGCCAAACAAACTTAAATTCTGCATGAGTTGTGTTCAGTTGACTAAGACAAAACTTGCCTCAGTGTCAGTGTCGGCTCAGCAGAGTGCTTTCGCCGTGGGTGTTCTTTTTGATCTCTACGCATTTCACCGCTCCACTGGAAATTCCCTCTGCCTGTCCAGGGTTGAGCCCTGAGATTTGACGGTGGACTTAAAAAGCCACCTACAGACCTACGCCCAATCATTCCGGATAACGCTTGCAGCCATAAATCTAGAAAAGTGTAAATAGAACTTGAGTTTCCATTAAGAATTGTCGTGAGCGTGTCAAGATCACGACATCACATAGTTGAAAATGCACCCTAACAAACTACAAGTAGATCATAGCTTCTGGTCAACTAACGCAATTAATGTGCAGGTTGGCGTGTTATGTGGTATTCTAGGACCTTAGGGAAGGGTCCAAGAGGCACCAGCCGGTTTTCCTTTCACTGTAAGGAGAGAGAGGTTATCGTTGCTCCACAAGGTGTGGGCTTTCGCCTATACCATACGGCCCATCTGTAA ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACACCTCCATCTCGCTCCCATTTCCCCTCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCCTCTTCCTCCACTTCCTCCGCCGCCGCCGCCGCCTTCCGCCACCACCACCACCACCATCATACCCCTTACGACCTCATCATGATGATGCCACGTGATACTCTCCCCGACTTCCGTTCCGATTCCGCTGCCACGCCCCCTGCCGTCGTCTCCACTCCAACAGCTCCCACCGCCTTCGAACTCGAAACTGCCTCACTCGCTGCCGACTGCGCCACGCCCCGATGGCCTCGCCAGGAAACTCTCACTCTCTTGGATATCAGATCTCGACTCGATTCTAAGTTCAAAGAAGCGAACCAAAAAGGACCCCTTTGGGATGAAGTTTCAAGGACCTTAGGGAAGGGTCCAAGAGGCACCAGCCGGTTTTCCTTTCACTGTAAGGAGAGAGAGGTTATCGTTGCTCCACAAGGTGTGGGCTTTCGCCTATACCATACGGCCCATCTGTAA ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACACCTCCATCTCGCTCCCATTTCCCCTCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCCTCTTCCTCCACTTCCTCCGCCGCCGCCGCCGCCTTCCGCCACCACCACCACCACCATCATACCCCTTACGACCTCATCATGATGATGCCACGTGATACTCTCCCCGACTTCCGTTCCGATTCCGCTGCCACGCCCCCTGCCGTCGTCTCCACTCCAACAGCTCCCACCGCCTTCGAACTCGAAACTGCCTCACTCGCTGCCGACTGCGCCACGCCCCGATGGCCTCGCCAGGAAACTCTCACTCTCTTGGATATCAGATCTCGACTCGATTCTAAGTTCAAAGAAGCGAACCAAAAAGGACCCCTTTGGGATGAAGTTTCAAGGACCTTAGGGAAGGGTCCAAGAGGCACCAGCCGGTTTTCCTTTCACTGTAAGGAGAGAGAGGTTATCGTTGCTCCACAAGGTGTGGGCTTTCGCCTATACCATACGGCCCATCTGTAA MEMDDQYALSDLRHLMTTPPSRSHFPSSSSIPHHDLFSSSSTSSAAAAAFRHHHHHHHTPYDLIMMMPRDTLPDFRSDSAATPPAVVSTPTAPTAFELETASLAADCATPRWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRTLGKGPRGTSRFSFHCKEREVIVAPQGVGFRLYHTAHL Homology
BLAST of Csor.00g204010 vs. ExPASy Swiss-Prot
Match: Q9LZS0 (Trihelix transcription factor PTL OS=Arabidopsis thaliana OX=3702 GN=PTL PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 5.4e-13 Identity = 67/177 (37.85%), Postives = 81/177 (45.76%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy Swiss-Prot
Match: Q9C6K3 (Trihelix transcription factor DF1 OS=Arabidopsis thaliana OX=3702 GN=DF1 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-08 Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy Swiss-Prot
Match: Q9C882 (Trihelix transcription factor GTL1 OS=Arabidopsis thaliana OX=3702 GN=GTL1 PE=1 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08 Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy Swiss-Prot
Match: Q39117 (Trihelix transcription factor GT-2 OS=Arabidopsis thaliana OX=3702 GN=GT-2 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07 Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 0
BLAST of Csor.00g204010 vs. NCBI nr
Match: KAG6590334.1 (Trihelix transcription factor PTL, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 369 bits (948), Expect = 6.02e-129 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
BLAST of Csor.00g204010 vs. NCBI nr
Match: XP_022934102.1 (trihelix transcription factor PTL [Cucurbita moschata] >KAG6580675.1 Trihelix transcription factor PTL, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017429.1 Trihelix transcription factor PTL, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 285 bits (728), Expect = 8.30e-91 Identity = 148/166 (89.16%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of Csor.00g204010 vs. NCBI nr
Match: XP_023526488.1 (trihelix transcription factor PTL [Cucurbita pepo subsp. pepo]) HSP 1 Score: 277 bits (709), Expect = 5.62e-88 Identity = 144/165 (87.27%), Postives = 148/165 (89.70%), Query Frame = 0
BLAST of Csor.00g204010 vs. NCBI nr
Match: XP_022982905.1 (trihelix transcription factor PTL [Cucurbita maxima]) HSP 1 Score: 275 bits (703), Expect = 4.47e-87 Identity = 145/166 (87.35%), Postives = 150/166 (90.36%), Query Frame = 0
BLAST of Csor.00g204010 vs. NCBI nr
Match: XP_038903677.1 (LOW QUALITY PROTEIN: trihelix transcription factor PTL-like [Benincasa hispida]) HSP 1 Score: 223 bits (567), Expect = 8.19e-67 Identity = 122/166 (73.49%), Postives = 130/166 (78.31%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy TrEMBL
Match: A0A6J1F1R1 (trihelix transcription factor PTL OS=Cucurbita moschata OX=3662 GN=LOC111441376 PE=4 SV=1) HSP 1 Score: 285 bits (728), Expect = 4.02e-91 Identity = 148/166 (89.16%), Postives = 152/166 (91.57%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy TrEMBL
Match: A0A6J1J465 (trihelix transcription factor PTL OS=Cucurbita maxima OX=3661 GN=LOC111481611 PE=4 SV=1) HSP 1 Score: 275 bits (703), Expect = 2.16e-87 Identity = 145/166 (87.35%), Postives = 150/166 (90.36%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy TrEMBL
Match: A0A0A0LEF7 (Myb-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G750930 PE=4 SV=1) HSP 1 Score: 203 bits (516), Expect = 1.49e-59 Identity = 114/165 (69.09%), Postives = 125/165 (75.76%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy TrEMBL
Match: A0A5A7TKS4 (Trihelix transcription factor PTL OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G002520 PE=4 SV=1) HSP 1 Score: 198 bits (503), Expect = 1.24e-57 Identity = 111/165 (67.27%), Postives = 123/165 (74.55%), Query Frame = 0
BLAST of Csor.00g204010 vs. ExPASy TrEMBL
Match: A0A1S3B7C3 (trihelix transcription factor PTL OS=Cucumis melo OX=3656 GN=LOC103486578 PE=4 SV=1) HSP 1 Score: 198 bits (503), Expect = 1.24e-57 Identity = 111/165 (67.27%), Postives = 123/165 (74.55%), Query Frame = 0
BLAST of Csor.00g204010 vs. TAIR 10
Match: AT5G03680.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 3.9e-14 Identity = 67/177 (37.85%), Postives = 81/177 (45.76%), Query Frame = 0
BLAST of Csor.00g204010 vs. TAIR 10
Match: AT3G10000.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12 Identity = 49/129 (37.98%), Postives = 67/129 (51.94%), Query Frame = 0
BLAST of Csor.00g204010 vs. TAIR 10
Match: AT3G10000.2 (Homeodomain-like superfamily protein ) HSP 1 Score: 65.1 bits (157), Expect = 6.8e-11 Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 0
BLAST of Csor.00g204010 vs. TAIR 10
Match: AT1G76880.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-09 Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 0
BLAST of Csor.00g204010 vs. TAIR 10
Match: AT1G33240.1 (GT-2-like 1 ) HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09 Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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