Csor.00g203860 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g203860
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Mechanosensitive ion channel protein
Location	Csor_Chr08: 5774033 .. 5774440 (-)
RNA-Seq Expression	Csor.00g203860
Synteny	Csor.00g203860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGCGGAAACCAGAAAACGACCATCTAGTTCTCGCCATCGACCCGCCGGAGAAGGAACAAATCTCACTATCTCCGGCCAGAACCAAAACTCTTCGCCGTCTAAATTTCTCTAAACCTAAATCGCGTTTCGACGAACCTAATTTCCCCTTTCTACGCCAAGAACCATTCCTGAATCCACCGATCTCCTTCAACCTACAGCAGAAGAAGATTCCAGTTCGTCATCTTCGTACTCTGAGGAAGAGGATGAAGATGAAGAAATCGGAGCTGGAAACGAAGGACGAAAACGGAAAAGGAGAAGAAGAAGAAGAAGATCAACAAACGAGTGTTAATCGAGTGGATATTGTTCCTCACCATAACTACTTGCTTAATCTGTGCCCTAACTCTCGAATCGCTTCAAGCTAA

mRNA sequence

ATGGAGGTGCGGAAACCAGAAAACGACCATCTAGTTCTCGCCATCGACCCGCCGGAGAAGGAACAAATCTCACTATCTCCGGCCAGAACCAAAACTCTTCGCCGTCTAAATTTCTCTAAACCTAAATCGCGTTTCGACGAACCTAATTTCCCCTTTCTACGCCAAGAACCATTCCTGAATCCACCGATCTCCTTCAACCTACAGCAGAAGAAGATTCCAGTTCGTCATCTTCGTACTCTGAGGAAGAGGATGAAGATGAAGAAATCGGAGCTGGAAACGAAGGACGAAAACGGAAAAGGAGAAGAAGAAGAAGAAGATCAACAAACGAGTGTTAATCGAGTGGATATTGTTCCTCACCATAACTACTTGCTTAATCTGTGCCCTAACTCTCGAATCGCTTCAAGCTAA

Coding sequence (CDS)

ATGGAGGTGCGGAAACCAGAAAACGACCATCTAGTTCTCGCCATCGACCCGCCGGAGAAGGAACAAATCTCACTATCTCCGGCCAGAACCAAAACTCTTCGCCGTCTAAATTTCTCTAAACCTAAATCGCGTTTCGACGAACCTAATTTCCCCTTTCTACGCCAAGAACCATTCCTGAATCCACCGATCTCCTTCAACCTACAGCAGAAGAAGATTCCAGTTCGTCATCTTCGTACTCTGAGGAAGAGGATGAAGATGAAGAAATCGGAGCTGGAAACGAAGGACGAAAACGGAAAAGGAGAAGAAGAAGAAGAAGATCAACAAACGAGTGTTAATCGAGTGGATATTGTTCCTCACCATAACTACTTGCTTAATCTGTGCCCTAACTCTCGAATCGCTTCAAGCTAA

Protein sequence

MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFPFLRQEPFLNPPISFNLQQKKIPVRHLRTLRKRMKMKKSELETKDENGKGEEEEEDQQTSVNRVDIVPHHNYLLNLCPNSRIASS

Homology

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BLAST of Csor.00g203860 vs. NCBI nr
Match: KAG6593647.1 (hypothetical protein SDJN03_13123, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264 bits (675), Expect = 6.40e-89
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFPFLRQEPFLN 60
           MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFPFLRQEPFLN
Sbjct: 1   MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFPFLRQEPFLN 60

Query: 61  PPISFNLQQKKIPVRHLRTLRKRMKMKKSELETKDENGKGEEEEEDQQTSVNRVDIVPHH 120
           PPISFNLQQKKIPVRHLRTLRKRMKMKKSELETKDENGKGEEEEEDQQTSVNRVDIVPHH
Sbjct: 61  PPISFNLQQKKIPVRHLRTLRKRMKMKKSELETKDENGKGEEEEEDQQTSVNRVDIVPHH 120

Query: 121 NYLLNLCPNSRIASS 135
           NYLLNLCPNSRIASS
Sbjct: 121 NYLLNLCPNSRIASS 135

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BLAST of Csor.00g203860 vs. NCBI nr
Match: KAG6593648.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (261), Expect = 3.78e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. NCBI nr
Match: XP_022964525.1 (mechanosensitive ion channel protein 10-like [Cucurbita moschata] >KAG6593772.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105 bits (261), Expect = 3.83e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. NCBI nr
Match: XP_023513519.1 (mechanosensitive ion channel protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105 bits (261), Expect = 3.83e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. NCBI nr
Match: KAG7026105.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 3.85e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL
Match: A0A6J1HL20 (Mechanosensitive ion channel protein OS=Cucurbita moschata OX=3662 GN=LOC111464526 PE=3 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.85e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL
Match: A0A6J1KML8 (Mechanosensitive ion channel protein OS=Cucurbita maxima OX=3661 GN=LOC111494700 PE=3 SV=1)

HSP 1 Score: 102 bits (253), Expect = 2.23e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKPENDHLVLAID PEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP
Sbjct: 1  MEVRKPENDHLVLAIDTPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51

[Close]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL
Match: A0A6J1KX29 (Mechanosensitive ion channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498994 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.23e-18
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNF 50
          MEVRKPE DHLVL IDPPEKEQIS SP RTKT RRLNFSKPKSRF+EP+F
Sbjct: 1  MEVRKPEKDHLVLTIDPPEKEQISPSPTRTKTFRRLNFSKPKSRFEEPDF 50

[Close]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL
Match: A0A6J1H840 (Mechanosensitive ion channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460422 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.23e-18
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPARTKTLRRLNFSKPKSRFDEPNFP 51
          MEVRKP  DHLVL IDPPEKEQIS SP RTKT RRLNFSKPKSRF+EP+FP
Sbjct: 1  MEVRKPVKDHLVLTIDPPEKEQISPSPTRTKTFRRLNFSKPKSRFEEPDFP 51

[Close]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL
Match: A0A5D3B9B7 (Mechanosensitive ion channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00100 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.51e-16
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MEVRKPENDHLVLAIDPPEKEQISLSPA-----RTKTLRRLNFSKPKSRFDEPNFP 51
          ME RK +NDHLVL IDPP+KEQIS SP      RTKTLRRLNFSKPKSRFDEPN+P
Sbjct: 1  MEPRKSDNDHLVLTIDPPQKEQISPSPTTTTITRTKTLRRLNFSKPKSRFDEPNYP 56

The following BLAST results are available for this feature:

BLAST of Csor.00g203860 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g203860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593647.1	6.40e-89	100.00	hypothetical protein SDJN03_13123, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6593648.1	3.78e-23	100.00	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022964525.1	3.83e-23	100.00	mechanosensitive ion channel protein 10-like [Cucurbita moschata] >KAG6593772.1 ...	[more]
XP_023513519.1	3.83e-23	100.00	mechanosensitive ion channel protein 10-like [Cucurbita pepo subsp. pepo]	[more]
KAG7026105.1	3.85e-23	100.00	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HL20	1.85e-23	100.00	Mechanosensitive ion channel protein OS=Cucurbita moschata OX=3662 GN=LOC1114645...	[more]
A0A6J1KML8	2.23e-22	98.04	Mechanosensitive ion channel protein OS=Cucurbita maxima OX=3661 GN=LOC111494700...	[more]
A0A6J1KX29	6.23e-18	86.00	Mechanosensitive ion channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498994...	[more]
A0A6J1H840	6.23e-18	84.31	Mechanosensitive ion channel protein OS=Cucurbita moschata OX=3662 GN=LOC1114604...	[more]
A0A5D3B9B7	3.51e-16	76.79	Mechanosensitive ion channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Csor.00g203860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g203860.m01	Csor.00g203860.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006820	anion transport
biological_process	GO:0050982	detection of mechanical stimulus
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008381	mechanosensitive ion channel activity