Csor.00g202650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g202650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Translation initiation factor IF-2 like
Location	Csor_Chr06: 1931665 .. 1933752 (+)
RNA-Seq Expression	Csor.00g202650
Synteny	Csor.00g202650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAACCCTCAATTTCTTGTGATTGGTAGCTTGAATTTTCCTTTTACGCTTGTTTTTCGTTTGAATAGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATACCACTTGATTATGGTACGCCAATATGATTCGTTTCTCTTTAGGATCTCATTTTTTGCCTGTTCATCAAATTCTCTTAACGATTTTGGGTTTTCTTTGCTATTGAAGACAATTTTGTTAATATTCAGTTTTCCATATATTTGTTTTTCTTCAATTTTTAGGGCAAAATTTATAGAATTTTTGGCTGGGAATATACAAAACCACAGAGGGTACCTCCAGCTTGTCCTTATCGCCCTGCTGCCAAACAAAATAGCAATGTAAGTGTTCTGCTATCGCTTTTATACTTTAATTCTGTTTTCTAATTGTCTTCTGAAGAAGTCGTTTTAATAAGTTGGGCATGTTGAAGAATTATGAATGGGATTGAATTTTTGTTTAGAAATTGGATATAAATGATGCGTTCCTGTTATGGAGACGCTTAAACTTTGATCAATAAATCTTCTTGGTGGCTGAATGCTGTTCGTTGCTACGATAGTTTTCAAAAACAATGATGGGAGTTTAGGCACCTGCTGTATGAATTTATTAATTGTTTTCTCAAGATGCCATTTCAATAGTTTGAACATACTGATGATCTTTTACAGGGTTGTGCTTCATTACTTGTGATTACTTATTCGATTCTTGTTCTTGTTCATGTTTTTTTGTTTTCCTTGGGGGTTGGAGGGGAGGGGGGGTATTTTCCTCATGTTGATTGGATGCTTTTTGCTTCAGTAGTTTTCTAAACCAATTAAGTATCTTCTATCCAATTGTGATTTTGTGCAACGGGTAGTATTCATAAATGATATGCATGTTTGAAATGACATTAGCTCTAGTTCATAAATTTTAAATCATAATGTTGATTCCATACTTGTGGTCACTATGTTTCCATGGTTGGGTAGTTTTAAACGAGTAATGATCACTTGAACAGGTTCAACTTTATGGGTCATAAATCTGTGTCCTCAAGTTCTTAAGGAAGTTTTTGGAAAAGAGTACAAGAGACAATGTTTTAGAACGTTTTTTGAGGCTCGTGCCTCGAGGCTTGCCTCGTGGCAATTTTCTAATTTTGTCTGGCTCCGTCGTGAGAAATTACTCAAGCCATAAGCCACTAAACAATTGTCTGGCTCCCTCCTTCTCCACTCCCTCTATTTATAACCAAATAGCTTAACAAACTCCCTTACTAAATATTTATATGCCCTTAACACTCCAATAATACTTCTAATAGTATTTTGATCAGATTTGTATAACTTTTTAACTTGAAACCAAGTCTGACGCCTCACCTCTCCAACAAGAAGCTAAAAGCTTCAACACTGCTTTAGCCTTTTAAAATATTGGCAAAGGGTTTTAGGATCTGCAGGAATCGCTGTTTCTTAGTTTTGAAACGAATAAATTAATGGCTTCTTTTAAATTTGATGGCATTCATTGATTTTTCTTCCCCGCCAATTTTCTCTACCTTAAACTGAAAAAGATATAATGGTCCAAAATCATTATGCATTATGTATACACTCAAGCTACAGAAGACATTGCATACAACCCTGAGAATAAGGATATAACAATGTGTTCTCATTCTGGTGTTGTGAGATTCCACATCGGTTGGAGAGGGGAACGGAACATTCCTTATAAGGGTATAGAAACCTCTCCCTAGCAGACGCGTTTAAAAACTGTGAGGCTGACGACGATACGTAATAGCCTGAAACGGTCAATATCTGCTAGTGGTAGGTTTAGACTATTACAGGTGTAAAACAAGATGTTCATTTATATTTGTTTGTATTTTGGTATTTTCGTATGTCAGAGTTCTTAACAGCAGATATGTGGGTGTTCAACACTACACATCCTCTAGTGGTTTAAATTCTTAACGTCTGCTCCTCTGGCTTCTTGAAGCAAGCTTTTTCTGAATCTTAACAGGAGGAGTTACAACCTCTAGCTGGTCAGCAGCACCCACCTCCAAAAGCCGTTGATGCGGAGGATGCAAAGCAAGACTGA

mRNA sequence

ATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATACCACTTGATTATGGGCAAAATTTATAGAATTTTTGGCTGGGAATATACAAAACCACAGAGGGTACCTCCAGCTTGTCCTTATCGCCCTGCTGCCAAACAAAATAGCAATGAGGAGTTACAACCTCTAGCTGGTCAGCAGCACCCACCTCCAAAAGCCGTTGATGCGGAGGATGCAAAGCAAGACTGA

Coding sequence (CDS)

ATGGTTTGCTTGGCGTGTTTATTGCCTCTGTTTCTCATTCCAGTCGTCAACGCGCTGCCTGTTCTATACCACTTGATTATGGGCAAAATTTATAGAATTTTTGGCTGGGAATATACAAAACCACAGAGGGTACCTCCAGCTTGTCCTTATCGCCCTGCTGCCAAACAAAATAGCAATGAGGAGTTACAACCTCTAGCTGGTCAGCAGCACCCACCTCCAAAAGCCGTTGATGCGGAGGATGCAAAGCAAGACTGA

Protein sequence

MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNEELQPLAGQQHPPPKAVDAEDAKQD

Homology

[Close]

BLAST of Csor.00g202650 vs. NCBI nr
Match: KAG6596489.1 (hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (424), Expect = 2.96e-52
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          ELQPLAGQQHPPPKAVDAEDAKQD
Sbjct: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84

[Close]

BLAST of Csor.00g202650 vs. NCBI nr
Match: XP_023538875.1 (uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157 bits (397), Expect = 3.91e-48
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+HLIMGKIYRIFGWEY KPQ VPPACPYRPAAKQNSNE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYRKPQGVPPACPYRPAAKQNSNE 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPKAVDA DAKQD
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 84

[Close]

BLAST of Csor.00g202650 vs. NCBI nr
Match: XP_023005210.1 (uncharacterized protein LOC111498307 [Cucurbita maxima])

HSP 1 Score: 156 bits (394), Expect = 1.09e-47
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+HLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN NE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN-NE 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPKAVDA DAKQD
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 83

[Close]

BLAST of Csor.00g202650 vs. NCBI nr
Match: XP_038903023.1 (uncharacterized protein LOC120089725 [Benincasa hispida])

HSP 1 Score: 149 bits (377), Expect = 4.41e-45
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL++LIMGKIY IFGWEY KPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNV 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          +L+PLAGQQHPPPKAVDA D KQD
Sbjct: 61 DLEPLAGQQHPPPKAVDAADEKQD 84

[Close]

BLAST of Csor.00g202650 vs. NCBI nr
Match: XP_008442719.1 (PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 uncharacterized protein LOC105434961 [Cucumis sativus] >KGN58993.1 hypothetical protein Csa_002586 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 6.03e-43
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL++LIMGKIY +FGWEY KPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPK VDA D KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL
Match: A0A6J1KWU0 (uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 5.28e-48
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+HLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN NE
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQN-NE 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPKAVDA DAKQD
Sbjct: 61 ELEPLAGQQHPPPKAVDAVDAKQD 83

[Close]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL
Match: A0A0A0LB44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.92e-43
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL++LIMGKIY +FGWEY KPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPK VDA D KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL
Match: A0A1S3B744 (uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.92e-43
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL++LIMGKIY +FGWEY KPQ VPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPQVVPPACPYRPAAKQNSNV 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+PLAGQQHPPPK VDA D KQD
Sbjct: 61 ELEPLAGQQHPPPKPVDAMDDKQD 84

[Close]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL
Match: A0A6J1F5U6 (uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442415 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 6.89e-42
Identity = 73/84 (86.90%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL+ LIMGKIY IFGWEY KPQRVPPACPYRPAAKQNSN 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFDLIMGKIYGIFGWEYRKPQRVPPACPYRPAAKQNSNA 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+P AGQQ PPPK VDA D KQD
Sbjct: 61 ELEPPAGQQLPPPKVVDAMDDKQD 84

[Close]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL
Match: A0A6J1CU80 (uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014385 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.39e-41
Identity = 70/84 (83.33%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNSNE 60
          MVCLACLLPLFLIPVVNALPVL++LIMGKIY +FGWEY KP+RVPPACPYRPAAKQN N 
Sbjct: 1  MVCLACLLPLFLIPVVNALPVLFYLIMGKIYGLFGWEYRKPERVPPACPYRPAAKQNGNV 60

Query: 61 ELQPLAGQQHPPPKAVDAEDAKQD 84
          EL+P AGQQHP PKAVDA D K+D
Sbjct: 61 ELEPQAGQQHPLPKAVDAVDTKED 84

[Close]

BLAST of Csor.00g202650 vs. TAIR 10
Match: AT5G03460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-14
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 1  MVCLACLLPLFLIPVVNALPVLYHLIMGKIYRIFGWEYTKPQRVPPACPYRPAAKQNS 59
          MVC+ CL+PLFL+P++N +P +    M K+Y   GWEY KP RVPPACP++P AK ++
Sbjct: 1  MVCVMCLVPLFLVPLINLMPRIIDYFMAKLYAWLGWEYRKPARVPPACPFKPVAKNDN 58

The following BLAST results are available for this feature:

BLAST of Csor.00g202650 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g202650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596489.1	2.96e-52	100.00	hypothetical protein SDJN03_09669, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023538875.1	3.91e-48	94.05	uncharacterized protein LOC111799671 [Cucurbita pepo subsp. pepo]	[more]
XP_023005210.1	1.09e-47	95.24	uncharacterized protein LOC111498307 [Cucurbita maxima]	[more]
XP_038903023.1	4.41e-45	89.29	uncharacterized protein LOC120089725 [Benincasa hispida]	[more]
XP_008442719.1	6.03e-43	86.90	PREDICTED: uncharacterized protein LOC103486509 [Cucumis melo] >XP_011651967.1 u...	[more]

BLAST of Csor.00g202650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWU0	5.28e-48	95.24	uncharacterized protein LOC111498307 OS=Cucurbita maxima OX=3661 GN=LOC111498307...	[more]
A0A0A0LB44	2.92e-43	86.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G741830 PE=4 SV=1	[more]
A0A1S3B744	2.92e-43	86.90	uncharacterized protein LOC103486509 OS=Cucumis melo OX=3656 GN=LOC103486509 PE=...	[more]
A0A6J1F5U6	6.89e-42	86.90	uncharacterized protein LOC111442415 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CU80	1.39e-41	83.33	uncharacterized protein LOC111014385 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Csor.00g202650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03460.1	8.7e-14	53.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..84
None	No IPR available	PANTHER	PTHR37756	TRANSMEMBRANE PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g202650.m01	Csor.00g202650.m01	mRNA