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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTGCATACACTGATAGTGGTAAGTACGAGCCTCCTCAGCAAAACAGAACCAATTCAGTGGAAACAAAGAGAGAAAAGGAACAAAGGGCAGAAACCCAGTTCTGTAGAAGCCACAAAAGGGAGAGAGAATTGAAGGTGAAGGATAATGGAATTGGAAAAGGCGAATGTGAAGAGAAAAGGAAGAAATATAAGGAAGAGAGAGAGAAGGGAGCTGAGAAAGAGGCCAAAGAAGAGGGGGAAAGGGCTAGCAGTGGGTGTTCCACTGAGGCACAGCCACAGCAGCATTAG mRNA sequence ATGAGTGCATACACTGATAGTGGTAAGTACGAGCCTCCTCAGCAAAACAGAACCAATTCAGTGGAAACAAAGAGAGAAAAGGAACAAAGGGCAGAAACCCAGTTCTGTAGAAGCCACAAAAGGGAGAGAGAATTGAAGGTGAAGGATAATGGAATTGGAAAAGGCGAATGTGAAGAGAAAAGGAAGAAATATAAGGAAGAGAGAGAGAAGGGAGCTGAGAAAGAGGCCAAAGAAGAGGGGGAAAGGGCTAGCAGTGGGTGTTCCACTGAGGCACAGCCACAGCAGCATTAG Coding sequence (CDS) ATGAGTGCATACACTGATAGTGGTAAGTACGAGCCTCCTCAGCAAAACAGAACCAATTCAGTGGAAACAAAGAGAGAAAAGGAACAAAGGGCAGAAACCCAGTTCTGTAGAAGCCACAAAAGGGAGAGAGAATTGAAGGTGAAGGATAATGGAATTGGAAAAGGCGAATGTGAAGAGAAAAGGAAGAAATATAAGGAAGAGAGAGAGAAGGGAGCTGAGAAAGAGGCCAAAGAAGAGGGGGAAAGGGCTAGCAGTGGGTGTTCCACTGAGGCACAGCCACAGCAGCATTAG Protein sequence MSAYTDSGKYEPPQQNRTNSVETKREKEQRAETQFCRSHKRERELKVKDNGIGKGECEEKRKKYKEEREKGAEKEAKEEGERASSGCSTEAQPQQH
Homology
BLAST of Csor.00g201810 vs. NCBI nr
Match: KAG6596406.1 (hypothetical protein SDJN03_09586, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177 bits (448), Expect = 1.53e-55 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query: 1 MSAYTDSGKYEPPQQNRTNSVETKREKEQRAETQFCRSHKRERELKVKDNGIGKGECEEK 60
MSAYTDSGKYEPPQQNRTNSVETKREKEQRAETQFCRSHKRERELKVKDNGIGKGECEEK
Sbjct: 1 MSAYTDSGKYEPPQQNRTNSVETKREKEQRAETQFCRSHKRERELKVKDNGIGKGECEEK 60
Query: 61 RKKYKEEREKGAEKEAKEEGERASSGCSTEAQPQQH 96
RKKYKEEREKGAEKEAKEEGERASSGCSTEAQPQQH
Sbjct: 61 RKKYKEEREKGAEKEAKEEGERASSGCSTEAQPQQH 96
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG6596406.1 | 1.53e-55 | 100.00 | hypothetical protein SDJN03_09586, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 57..77 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 20..84 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..96 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..19 |
Relationships
The following mRNA feature(s) are a part of this gene:
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