Csor.00g201040 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g201040
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 5345976 .. 5346466 (+)
RNA-Seq ExpressionCsor.00g201040
SyntenyCsor.00g201040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGCATACGAAATCCAGGTGCAAGAGGAGCTGTGTTGGAATGAATGGACCAATGGGCCCAACACGGCCTTTTCTTCGGCCCATGGAGCTCCTCATCTCTCTCACTCCTCTCACCCCACATTTGGTCTTCGCCAGAAAAGTTCGATTCCCGCTATGGCTCTGCTTCACTCTTCCTCTCAATTCTCAACTGTTCGATGGACTCGTTCTTCTCATCGTATCTCTGCAACTCCACGTAGCCGATTCTGCAACGTAAGGTCTCTTCTCTTCATCCTTGTGATTTTACTTCTGTCTTTTTCGGGAGAAATTCGTGTATTTGCCTGACATATATATATATATATATATATATATATATATATATATATATATTTTGTATTTATGTCGTTAGGTCCTGTCTGCCAATGCCGATGCAGAATGGGAAGTATCGGAGAGAGCTTGAAGCAGCTGTCGATGTGGTACAGAGAGCTTGTCGTCTATGCGTTGATGTAA

mRNA sequence

ATGTCAGCGCATACGAAATCCAGGTGCAAGAGGAGCTGTGTTGGAATGAATGGACCAATGGGCCCAACACGGCCTTTTCTTCGGCCCATGGAGCTCCTCATCTCTCTCACTCCTCTCACCCCACATTTGGTCTTCGCCAGAAAAGTTCGATTCCCGCTATGGCTCTGCTTCACTCTTCCTCTCAATTCTCAACTGTTCGATGGACTCGTTCTTCTCATCGTATCTCTGCAACTCCACGTAGCCGATTCTGCAACAATGGGAAGTATCGGAGAGAGCTTGAAGCAGCTGTCGATGTGGTACAGAGAGCTTGTCGTCTATGCGTTGATGTAA

Coding sequence (CDS)

ATGTCAGCGCATACGAAATCCAGGTGCAAGAGGAGCTGTGTTGGAATGAATGGACCAATGGGCCCAACACGGCCTTTTCTTCGGCCCATGGAGCTCCTCATCTCTCTCACTCCTCTCACCCCACATTTGGTCTTCGCCAGAAAAGTTCGATTCCCGCTATGGCTCTGCTTCACTCTTCCTCTCAATTCTCAACTGTTCGATGGACTCGTTCTTCTCATCGTATCTCTGCAACTCCACGTAGCCGATTCTGCAACAATGGGAAGTATCGGAGAGAGCTTGAAGCAGCTGTCGATGTGGTACAGAGAGCTTGTCGTCTATGCGTTGATGTAA

Protein sequence

MSAHTKSRCKRSCVGMNGPMGPTRPFLRPMELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLHVADSATMGSIGESLKQLSMWYRELVVYALM
Homology
[Close]
BLAST of Csor.00g201040 vs. NCBI nr
Match: XP_022949728.1 (putative PAP-specific phosphatase, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 110 bits (275), Expect = 4.07e-26
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 30 MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLHVADSAT 85
          MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLH ADSAT
Sbjct: 1  MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLHAADSAT 56

[Close]
BLAST of Csor.00g201040 vs. ExPASy TrEMBL
Match: A0A6J1GCV9 (putative PAP-specific phosphatase, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453034 PE=3 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.97e-26
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 30 MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLHVADSAT 85
          MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLH ADSAT
Sbjct: 1  MELLISLTPLTPHLVFARKVRFPLWLCFTLPLNSQLFDGLVLLIVSLQLHAADSAT 56

The following BLAST results are available for this feature:
BLAST of Csor.00g201040 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g201040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949728.14.07e-2698.21putative PAP-specific phosphatase, mitochondrial isoform X2 [Cucurbita moschata][more]
BLAST of Csor.00g201040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GCV91.97e-2698.21putative PAP-specific phosphatase, mitochondrial isoform X2 OS=Cucurbita moschat... [more]
BLAST of Csor.00g201040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g201040.m01Csor.00g201040.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046855 inositol phosphate dephosphorylation
molecular_function GO:0046872 metal ion binding