Csor.00g200890 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g200890
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ctenidin-3-like
Location	Csor_Chr03: 5273491 .. 5273868 (-)
RNA-Seq Expression	Csor.00g200890
Synteny	Csor.00g200890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCTCCCTCCCCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

mRNA sequence

ATGAATCTCTCCCTCCCCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Coding sequence (CDS)

ATGAATCTCTCCCTCCCCATTTCCGCTCTTCTCCTCGCCGTTCTCCTCCTCTCCCCCTCCGCCTCTCTCGCCGCCGGGATGTTCGAACCCGGCGGCGGATTTGATGACATACCCGGCTTTCGGAAAGGCTGGGACAAGGGGATCGTCGGTGGTGGCTACGGCGGTGGATACGGCGGACCAAAAGGCAGTTACGGCAAGGGTGGAATCATAAGGAACACTGTGGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCCAAGTGCTTCTCCTCTTATAGCCGATCGGGCAAGGGATTCGGAGGCGGCGGCGGCGGCGGTGGCTGCACCATCGACTGCTCTAAGAAGTGTATTGGCTATTGTTAG

Protein sequence

MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC

Homology

[Close]

BLAST of Csor.00g200890 vs. NCBI nr
Match: KAG6603713.1 (hypothetical protein SDJN03_04322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254 bits (648), Expect = 3.99e-85
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. NCBI nr
Match: KAG7033891.1 (hypothetical protein SDJN02_03616, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249 bits (636), Expect = 1.50e-82
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGY 124
           CIGY
Sbjct: 121 CIGY 124

[Close]

BLAST of Csor.00g200890 vs. NCBI nr
Match: XP_022950168.1 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Cucurbita moschata])

HSP 1 Score: 246 bits (629), Expect = 3.16e-82
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS KGFGGGGGGGGCTIDCS+K
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. NCBI nr
Match: XP_023543509.1 (ATP-dependent RNA helicase A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246 bits (627), Expect = 6.37e-82
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SL ISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLLISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. NCBI nr
Match: XP_022977844.1 (ATP-dependent RNA helicase A-like [Cucurbita maxima])

HSP 1 Score: 245 bits (626), Expect = 9.05e-82
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SLPISALLLA+LLLSPSASLAAG+FEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAILLLSPSASLAAGVFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTV+CKE+GPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVLCKERGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL
Match: A0A6J1GE63 (heterogeneous nuclear ribonucleoprotein A3 homolog 2-like OS=Cucurbita moschata OX=3662 GN=LOC111453342 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 1.53e-82
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS KGFGGGGGGGGCTIDCS+K
Sbjct: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSRKGFGGGGGGGGCTIDCSEK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL
Match: A0A6J1ISI2 (ATP-dependent RNA helicase A-like OS=Cucurbita maxima OX=3661 GN=LOC111478019 PE=4 SV=1)

HSP 1 Score: 245 bits (626), Expect = 4.38e-82
Identity = 119/125 (95.20%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAAGMFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60
           MN SLPISALLLA+LLLSPSASLAAG+FEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP
Sbjct: 1   MNPSLPISALLLAILLLSPSASLAAGVFEPGGGFDDIPGFRKGWDKGIVGGGYGGGYGGP 60

Query: 61  KGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120
           KG YGKGGIIRNTV+CKE+GPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK
Sbjct: 61  KGGYGKGGIIRNTVLCKERGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKK 120

Query: 121 CIGYC 125
           CIGYC
Sbjct: 121 CIGYC 125

[Close]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL
Match: A0A6J1EFI3 (neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 SV=1)

HSP 1 Score: 219 bits (558), Expect = 1.43e-71
Identity = 110/135 (81.48%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAA----------GMFEPGGGFDDIPGFRKGWDKGIVG 60
           MN  + IS LL+AVLLLSP+ SLA           GMF PG GFDDIPGF KGWDKGI+G
Sbjct: 1   MNRHMAISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIG 60

Query: 61  GGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120
           GGYGGGYGGPKG YGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG
Sbjct: 61  GGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 120

Query: 121 GGCTIDCSKKCIGYC 125
           GGCTIDC+KKCIGYC
Sbjct: 121 GGCTIDCTKKCIGYC 135

[Close]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL
Match: A0A0A0KHJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516980 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 1.29e-69
Identity = 106/133 (79.70%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MNL +PI   L+A+LLLSPS SLA         GMF PG GF DIPGF KGWDKGI+GGG
Sbjct: 1   MNLFIPIFPFLIAILLLSPSISLATARKDGGFDGMFGPGNGFGDIPGFGKGWDKGIIGGG 60

Query: 61  YGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGG 120
           YGGGYGGPKG YGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSKKCIGYC 125
           CTIDC+KKCIGYC
Sbjct: 121 CTIDCTKKCIGYC 133

[Close]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL
Match: A0A5A7UGS4 (Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003320 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 1.83e-69
Identity = 106/133 (79.70%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MNLSLPISALLLAVLLLSPSASLAA--------GMFEPGGGFDDIPGFRKGWDKGIVGGG 60
           MN  +PI   L+A+LLLSPS SLA         GMF PG GFDDIPGF KGWDKGIVGGG
Sbjct: 1   MNFFIPIFPFLIAILLLSPSLSLATSRKDGGFGGMFGPGNGFDDIPGFGKGWDKGIVGGG 60

Query: 61  YGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGG 120
           YGGGYGGPKG YGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKG+GGGGGGGG
Sbjct: 61  YGGGYGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGG 120

Query: 121 CTIDCSKKCIGYC 125
           CTIDC+KKCIGYC
Sbjct: 121 CTIDCAKKCIGYC 133

[Close]

BLAST of Csor.00g200890 vs. TAIR 10
Match: AT4G21620.1 (glycine-rich protein )

HSP 1 Score: 144.1 bits (362), Expect = 7.8e-35
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 30  PGGGFDDIPGFRKGWDKGIVGGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTC 89
           PG GF  IPGF  G+    VGGGYGGG+GGP G +GKGG++R TV CKEKGPC  KK+ C
Sbjct: 38  PGSGF--IPGFGNGFPGTGVGGGYGGGFGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRC 97

Query: 90  PAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           PAKCF S+SRSGKG+GGGGGGGGCT+DC KKCI YC
Sbjct: 98  PAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131

[Close]

BLAST of Csor.00g200890 vs. TAIR 10
Match: AT4G21620.2 (glycine-rich protein )

HSP 1 Score: 110.5 bits (275), Expect = 9.6e-25
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 51  GGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGG 110
           G  G G+GG    +GKGG++R TV CKEKGPC  KK+ CPAKCF S+SRSGKG+GGGGGG
Sbjct: 28  GNDGLGFGG----FGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGG 87

Query: 111 GGCTIDCSKKCIGYC 126
           GGCT+DC KKCI YC
Sbjct: 88  GGCTMDCKKKCIAYC 98

[Close]

BLAST of Csor.00g200890 vs. TAIR 10
Match: AT1G61255.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 7.1e-20
Identity = 54/100 (54.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 28  FEPGGGFDDIPGFRKGWDKGIV--GGGYGGGYGGPKGSYGKGGIIRNTVVCKEKGPCYNK 87
           +  G G    PG       G +  G G GG Y    G Y KG  +R TV+C+EKG CY K
Sbjct: 47  YNKGYGSGGYPGLTTEPATGFILPGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMK 106

Query: 88  KVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCSKKCIGYC 126
           K+TCPAKCF S SR GKG+  GGGGGGCTIDC KKC+ YC
Sbjct: 107 KLTCPAKCFKSLSRKGKGY--GGGGGGCTIDC-KKCVAYC 143

The following BLAST results are available for this feature:

BLAST of Csor.00g200890 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g200890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603713.1	3.99e-85	100.00	hypothetical protein SDJN03_04322, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033891.1	1.50e-82	99.19	hypothetical protein SDJN02_03616, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022950168.1	3.16e-82	97.60	heterogeneous nuclear ribonucleoprotein A3 homolog 2-like [Cucurbita moschata]	[more]
XP_023543509.1	6.37e-82	97.60	ATP-dependent RNA helicase A [Cucurbita pepo subsp. pepo]	[more]
XP_022977844.1	9.05e-82	95.20	ATP-dependent RNA helicase A-like [Cucurbita maxima]	[more]

BLAST of Csor.00g200890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GE63	1.53e-82	97.60	heterogeneous nuclear ribonucleoprotein A3 homolog 2-like OS=Cucurbita moschata ...	[more]
A0A6J1ISI2	4.38e-82	95.20	ATP-dependent RNA helicase A-like OS=Cucurbita maxima OX=3661 GN=LOC111478019 PE...	[more]
A0A6J1EFI3	1.43e-71	81.48	neuropeptide-like protein 31 OS=Cucurbita moschata OX=3662 GN=LOC111433724 PE=4 ...	[more]
A0A0A0KHJ2	1.29e-69	79.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516980 PE=4 SV=1	[more]
A0A5A7UGS4	1.83e-69	79.70	Ctenidin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G0033...	[more]

BLAST of Csor.00g200890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21620.1	7.8e-35	70.83	glycine-rich protein	[more]
AT4G21620.2	9.6e-25	69.33	glycine-rich protein	[more]
AT1G61255.1	7.1e-20	54.00	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34789	EXPRESSED PROTEIN	coord: 24..125
None	No IPR available	PANTHER	PTHR34789:SF1	EXPRESSED PROTEIN	coord: 24..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g200890.m01	Csor.00g200890.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007218	neuropeptide signaling pathway
molecular_function	GO:0004386	helicase activity