Csor.00g200690 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g200690
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Zinc finger CCHC domain-containing protein 10
Location	Csor_Chr03: 5159866 .. 5160359 (+)
RNA-Seq Expression	Csor.00g200690
Synteny	Csor.00g200690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATCAACGATCTCGAAAAATCAATGCGAGAAAGTTCCAGAAATCGCCACATCCAAACAGCGCGATGAGAAAGAACCTAATCAGAATACTCCAGATCGAGCAAATTCAAGCCCTAACTCCGAATCTCGCAACAATTCCTGCACCGATCCCCACCGATCTTCTCAAATCCCTCAAAGAAAAGATCAGAGGTACTAAAATTCCCGCTCCCGCTCCCCCTCAAACTCGCAAAACTTCACCATTTACATATGAATTAACCTAAGCACCGCCCTAATTACGATTACAATTGTTTCAAGCTTTTCAGGATAAGTAAAGGAGAAAGAGAACAAGCATTACACTGATAATTTGATAGCATCTGTTCCCGGAGCGACGCCGGCGGCGAACTCAAAGACGGGGGCGATGAAGATGAAAGCAATCCACGAGAGGGCAACAGAAGTTCATGATGCTCCAAAGCACATCAGAGGAAATGTCCAGAACTCATTTAAATTATAG

mRNA sequence

ATGTGGAATCAACGATCTCGAAAAATCAATGCGAGAAAGTTCCAGAAATCGCCACATCCAAACAGCGCGATGAGAAAGAACCTAATCAGAATACTCCAGATCGAGCAAATTCAAGCCCTAACTCCGAATCTCGCAACAATTCCTGCACCGATCCCCACCGATCTTCTCAAATCCCTCAAAGAAAAGATCAGAGTAAAGGAGAAAGAGAACAAGCATTACACTGATAATTTGATAGCATCTGTTCCCGGAGCGACGCCGGCGGCGAACTCAAAGACGGGGGCGATGAAGATGAAAGCAATCCACGAGAGGGCAACAGAAGTTCATGATGCTCCAAAGCACATCAGAGGAAATGTCCAGAACTCATTTAAATTATAG

Coding sequence (CDS)

ATGTGGAATCAACGATCTCGAAAAATCAATGCGAGAAAGTTCCAGAAATCGCCACATCCAAACAGCGCGATGAGAAAGAACCTAATCAGAATACTCCAGATCGAGCAAATTCAAGCCCTAACTCCGAATCTCGCAACAATTCCTGCACCGATCCCCACCGATCTTCTCAAATCCCTCAAAGAAAAGATCAGAGTAAAGGAGAAAGAGAACAAGCATTACACTGATAATTTGATAGCATCTGTTCCCGGAGCGACGCCGGCGGCGAACTCAAAGACGGGGGCGATGAAGATGAAAGCAATCCACGAGAGGGCAACAGAAGTTCATGATGCTCCAAAGCACATCAGAGGAAATGTCCAGAACTCATTTAAATTATAG

Protein sequence

MWNQRSRKINARKFQKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYTDNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFKL

Homology

[Close]

BLAST of Csor.00g200690 vs. NCBI nr
Match: XP_031740007.1 (uncharacterized protein LOC101221538 isoform X2 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 5.04e-22
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N           + +PN + I     +++  +  +   V+ KE +HY 
Sbjct: 122 EKKPNRNAPYRLN-------SSPNSESPNNSYIDPQHTSEIPHTKDQSFSVEVKEREHYI 181

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 182 DNLAESVPGAAPVANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 223

[Close]

BLAST of Csor.00g200690 vs. NCBI nr
Match: XP_011653607.1 (uncharacterized protein LOC101221538 isoform X1 [Cucumis sativus] >XP_031740006.1 uncharacterized protein LOC101221538 isoform X1 [Cucumis sativus] >KGN54198.1 hypothetical protein Csa_018000 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 6.83e-22
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N           + +PN + I     +++  +  +   V+ KE +HY 
Sbjct: 137 EKKPNRNAPYRLN-------SSPNSESPNNSYIDPQHTSEIPHTKDQSFSVEVKEREHYI 196

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 197 DNLAESVPGAAPVANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 238

[Close]

BLAST of Csor.00g200690 vs. NCBI nr
Match: XP_008447301.1 (PREDICTED: uncharacterized protein LOC103489769 [Cucumis melo] >XP_008447305.1 PREDICTED: uncharacterized protein LOC103489769 [Cucumis melo] >XP_016900817.1 PREDICTED: uncharacterized protein LOC103489769 [Cucumis melo] >KAA0047317.1 zinc finger CCHC domain-containing protein 10 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.39e-22
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N I   +       +PN   I     +++  +  +   V+ KE KHY 
Sbjct: 141 EKKPNRNTPDRLNSIPNSE-------SPNNFYIDPRHTSEIPHTKDQSFSVEVKERKHYI 200

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 201 DNLAESVPGAAPMANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 242

[Close]

BLAST of Csor.00g200690 vs. NCBI nr
Match: XP_038881376.1 (uncharacterized protein LOC120072916 isoform X2 [Benincasa hispida] >XP_038881377.1 uncharacterized protein LOC120072916 isoform X2 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 3.69e-21
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 61  EKIRVKE-KENKHYTDNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQ 120
           E   V+E KE +HY DN++ASVPGA PAANS+T AMKMK IHERATEVHDA KHIRGNVQ
Sbjct: 180 ESFSVEEVKEREHYIDNVVASVPGAAPAANSETRAMKMKEIHERATEVHDALKHIRGNVQ 239

Query: 121 NSFKL 124
           +SF++
Sbjct: 240 SSFEI 244

[Close]

BLAST of Csor.00g200690 vs. NCBI nr
Match: XP_038881375.1 (uncharacterized protein LOC120072916 isoform X1 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 3.86e-21
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 61  EKIRVKE-KENKHYTDNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQ 120
           E   V+E KE +HY DN++ASVPGA PAANS+T AMKMK IHERATEVHDA KHIRGNVQ
Sbjct: 183 ESFSVEEVKEREHYIDNVVASVPGAAPAANSETRAMKMKEIHERATEVHDALKHIRGNVQ 242

Query: 121 NSFKL 124
           +SF++
Sbjct: 243 SSFEI 247

[Close]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL
Match: A0A0A0KXC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293080 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.31e-22
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N           + +PN + I     +++  +  +   V+ KE +HY 
Sbjct: 137 EKKPNRNAPYRLN-------SSPNSESPNNSYIDPQHTSEIPHTKDQSFSVEVKEREHYI 196

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 197 DNLAESVPGAAPVANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 238

[Close]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL
Match: A0A1S3BHR6 (uncharacterized protein LOC103489769 OS=Cucumis melo OX=3656 GN=LOC103489769 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.58e-22
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N I   +       +PN   I     +++  +  +   V+ KE KHY 
Sbjct: 141 EKKPNRNTPDRLNSIPNSE-------SPNNFYIDPRHTSEIPHTKDQSFSVEVKERKHYI 200

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 201 DNLAESVPGAAPMANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 242

[Close]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL
Match: A0A5A7TZE9 (Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001350 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.58e-22
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 15  QKSPHPNSAMRKNLIRILQIEQIQALTPNLATIPAPIPTDLLKSLKEKIRVKEKENKHYT 74
           +K P+ N+  R N I   +       +PN   I     +++  +  +   V+ KE KHY 
Sbjct: 141 EKKPNRNTPDRLNSIPNSE-------SPNNFYIDPRHTSEIPHTKDQSFSVEVKERKHYI 200

Query: 75  DNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKHIRGNVQNSFK 123
           DNL  SVPGA P ANS+TGAMKMK IHERATEVHDA KHIRGNVQ+SF+
Sbjct: 201 DNLAESVPGAAPMANSETGAMKMKEIHERATEVHDALKHIRGNVQSSFE 242

[Close]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL
Match: A0A6J1CS61 (uncharacterized protein LOC111013694 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013694 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.10e-14
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 63  IRVKEKENKHYTDNLIASVPGATPAANSKTGAMKMKAI-HERATEVHDAPKHIRGNVQNS 122
           + +KE+E +HY DN +ASVPGA PAA+ ++ AMK  AI  ERA +VHD  KH+RGNVQ+S
Sbjct: 181 VELKEREKEHYIDNPVASVPGAVPAASRESRAMKPTAIIQERARDVHDGVKHVRGNVQSS 240

[Close]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL
Match: A0A6J1IB17 (uncharacterized protein LOC111471273 OS=Cucurbita maxima OX=3661 GN=LOC111471273 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.63e-10
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 66  KEKENKHYTDNLIASVPGATPAANSKTGAMKMKAIHERATEVHDAPKH--IRGNVQNSFK 123
           KE+EN+HY D L AS PGA PAA      MKMK IHER T+V DA K   IRGNVQ  F+
Sbjct: 186 KERENEHYIDKLAASAPGAAPAATKMK--MKMKGIHERGTDVPDAVKQHVIRGNVQRPFE 243

The following BLAST results are available for this feature:

BLAST of Csor.00g200690 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g200690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740007.1	5.04e-22	48.62	uncharacterized protein LOC101221538 isoform X2 [Cucumis sativus]	[more]
XP_011653607.1	6.83e-22	48.62	uncharacterized protein LOC101221538 isoform X1 [Cucumis sativus] >XP_031740006....	[more]
XP_008447301.1	7.39e-22	50.46	PREDICTED: uncharacterized protein LOC103489769 [Cucumis melo] >XP_008447305.1 P...	[more]
XP_038881376.1	3.69e-21	72.31	uncharacterized protein LOC120072916 isoform X2 [Benincasa hispida] >XP_03888137...	[more]
XP_038881375.1	3.86e-21	72.31	uncharacterized protein LOC120072916 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXC4	3.31e-22	48.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293080 PE=4 SV=1	[more]
A0A1S3BHR6	3.58e-22	50.46	uncharacterized protein LOC103489769 OS=Cucumis melo OX=3656 GN=LOC103489769 PE=...	[more]
A0A5A7TZE9	3.58e-22	50.46	Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1CS61	4.10e-14	58.06	uncharacterized protein LOC111013694 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1IB17	1.63e-10	60.00	uncharacterized protein LOC111471273 OS=Cucurbita maxima OX=3661 GN=LOC111471273...	[more]

BLAST of Csor.00g200690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g200690.m02	Csor.00g200690.m02	mRNA