Csor.00g200410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g200410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	cation/H(+) antiporter 20-like
Location	Csor_Chr03: 5038588 .. 5038830 (+)
RNA-Seq Expression	Csor.00g200410
Synteny	Csor.00g200410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCCAATGGCGTCTGGCAAGGCGACAACCCCCTCCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTTCTCTCCCGCCTCCTCGCCCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGTAAGTTCTTCTCCAATGCTCTGTTTCTCCAACTTTTTTGATTTCGTTAATGGGTTCTTTTAA

mRNA sequence

ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCCAATGGCGTCTGGCAAGGCGACAACCCCCTCCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTTCTCTCCCGCCTCCTCGCCCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGTAAGTTCTTCTCCAATGCTCTGTTTCTCCAACTTTTTTGATTTCGTTAATGGGTTCTTTTAA

Coding sequence (CDS)

ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCCAATGGCGTCTGGCAAGGCGACAACCCCCTCCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTTCTCTCCCGCCTCCTCGCCCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGTAAGTTCTTCTCCAATGCTCTGTTTCTCCAACTTTTTTGATTTCGTTAATGGGTTCTTTTAA

Protein sequence

MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIVVSSSPMLCFSNFFDFVNGFF

Homology

[Close]

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot
Match: Q9M353 (Cation/H(+) antiporter 20 OS=Arabidopsis thaliana OX=3702 GN=CHX20 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-17
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          M  NITS+K +SNGVWQGDNPL+FAFPLLI+Q+ LI+ +SR LA+L KPLRQPKVIAEIV
Sbjct: 1  MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot
Match: Q9SUQ7 (Cation/H(+) antiporter 17 OS=Arabidopsis thaliana OX=3702 GN=CHX17 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.9e-12
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 8  IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          +K  SNGV+QG+NPL  A PLLILQ  ++LLL+RLLA LL+PLRQP+VIAEIV
Sbjct: 12 MKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEIV 64

[Close]

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot
Match: Q9FFR9 (Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-11
Identity = 33/53 (62.26%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 8  IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          +K  SNGV+QGDNP+ FA PL ILQ V++++L+R+LA LL+PLRQP+VIAE++
Sbjct: 13 MKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVI 65

[Close]

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot
Match: Q1HDT3 (Cation/H(+) antiporter 16 OS=Arabidopsis thaliana OX=3702 GN=CHX16 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-10
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 4  NITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          N+  +K  SNGV+ G++PL FAFPL+ILQ  L++ ++R LA LL+P+RQP+V+AEI+
Sbjct: 17 NVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVVAEII 73

[Close]

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot
Match: Q9LUN4 (Cation/H(+) antiporter 19 OS=Arabidopsis thaliana OX=3702 GN=CHX19 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  SVNITS-----IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVI 61
          S N+T      +K  SNG +Q ++PL FA PL+ILQ VL+++ +RLLA  LKPL+QP+VI
Sbjct: 3  STNVTGQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVI 62

[Close]

BLAST of Csor.00g200410 vs. NCBI nr
Match: KAG6603666.1 (Cation/H(+) antiporter 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (380), Expect = 1.16e-45
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

Query: 61 VSSSPMLCFSNFFDFVNGFF 80
          VSSSPMLCFSNFFDFVNGFF
Sbjct: 61 VSSSPMLCFSNFFDFVNGFF 80

[Close]

BLAST of Csor.00g200410 vs. NCBI nr
Match: XP_022949901.1 (cation/H(+) antiporter 20-like [Cucurbita moschata])

HSP 1 Score: 110 bits (275), Expect = 5.96e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. NCBI nr
Match: KAG7033846.1 (Cation/H(+) antiporter 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (275), Expect = 5.96e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. NCBI nr
Match: XP_022978941.1 (cation/H(+) antiporter 20-like [Cucurbita maxima])

HSP 1 Score: 110 bits (275), Expect = 5.96e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. NCBI nr
Match: XP_023545155.1 (cation/H(+) antiporter 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (275), Expect = 5.96e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL
Match: A0A6J1IPD5 (cation/H(+) antiporter 20-like OS=Cucurbita maxima OX=3661 GN=LOC111478742 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 2.89e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL
Match: A0A6J1GDC1 (cation/H(+) antiporter 20-like OS=Cucurbita moschata OX=3662 GN=LOC111453157 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 2.89e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV
Sbjct: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL
Match: A0A0A0KXF6 (Na_H_Exchanger domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294410 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 1.07e-23
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          M+VNITSIK ASNG+WQGDNPLHFAFPLLILQSVLIL+L+R LALLLKPLRQPKVIAEIV
Sbjct: 3  MNVNITSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIV 62

[Close]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL
Match: A0A6J1HHL1 (cation/H(+) antiporter 20-like OS=Cucurbita moschata OX=3662 GN=LOC111463599 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 9.40e-23
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          MSVNITSIK ASNGVWQGDNPL+FAFPLLILQSVLILLL+RLLA +LKPLRQPKVIAEI+
Sbjct: 1  MSVNITSIKTASNGVWQGDNPLNFAFPLLILQSVLILLLTRLLAAVLKPLRQPKVIAEIL 60

[Close]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL
Match: A0A5D3DIW8 (Cation/H(+) antiporter 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00040 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.09e-22
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 2  SVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          ++NI+SIK ASNG+WQGDNPLHFAFPLLILQSVLIL+L+R LALLLKPLRQPKVIAEIV
Sbjct: 4  NMNISSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIV 62

[Close]

BLAST of Csor.00g200410 vs. TAIR 10
Match: AT3G53720.1 (cation/H+ exchanger 20 )

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-18
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 60
          M  NITS+K +SNGVWQGDNPL+FAFPLLI+Q+ LI+ +SR LA+L KPLRQPKVIAEIV
Sbjct: 1  MPFNITSVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

[Close]

BLAST of Csor.00g200410 vs. TAIR 10
Match: AT4G23700.1 (cation/H+ exchanger 17 )

HSP 1 Score: 70.5 bits (171), Expect = 7.0e-13
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 8  IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          +K  SNGV+QG+NPL  A PLLILQ  ++LLL+RLLA LL+PLRQP+VIAEIV
Sbjct: 12 MKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEIV 64

[Close]

BLAST of Csor.00g200410 vs. TAIR 10
Match: AT5G41610.1 (cation/H+ exchanger 18 )

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-12
Identity = 33/53 (62.26%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 8  IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          +K  SNGV+QGDNP+ FA PL ILQ V++++L+R+LA LL+PLRQP+VIAE++
Sbjct: 13 MKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQPRVIAEVI 65

[Close]

BLAST of Csor.00g200410 vs. TAIR 10
Match: AT1G64170.1 (cation/H+ exchanger 16 )

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 4  NITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIV 61
          N+  +K  SNGV+ G++PL FAFPL+ILQ  L++ ++R LA LL+P+RQP+V+AEI+
Sbjct: 17 NVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVVAEII 73

[Close]

BLAST of Csor.00g200410 vs. TAIR 10
Match: AT3G17630.1 (cation/H+ exchanger 19 )

HSP 1 Score: 63.5 bits (153), Expect = 8.6e-11
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  SVNITS-----IKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVI 61
          S N+T      +K  SNG +Q ++PL FA PL+ILQ VL+++ +RLLA  LKPL+QP+VI
Sbjct: 3  STNVTGQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVI 62

The following BLAST results are available for this feature:

BLAST of Csor.00g200410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M353	2.1e-17	75.00	Cation/H(+) antiporter 20 OS=Arabidopsis thaliana OX=3702 GN=CHX20 PE=2 SV=1	[more]
Q9SUQ7	9.9e-12	69.81	Cation/H(+) antiporter 17 OS=Arabidopsis thaliana OX=3702 GN=CHX17 PE=1 SV=1	[more]
Q9FFR9	2.2e-11	62.26	Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1	[more]
Q1HDT3	2.4e-10	54.39	Cation/H(+) antiporter 16 OS=Arabidopsis thaliana OX=3702 GN=CHX16 PE=2 SV=1	[more]
Q9LUN4	1.2e-09	53.13	Cation/H(+) antiporter 19 OS=Arabidopsis thaliana OX=3702 GN=CHX19 PE=2 SV=1	[more]

BLAST of Csor.00g200410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603666.1	1.16e-45	100.00	Cation/H(+) antiporter 20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022949901.1	5.96e-26	100.00	cation/H(+) antiporter 20-like [Cucurbita moschata]	[more]
KAG7033846.1	5.96e-26	100.00	Cation/H(+) antiporter 20, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022978941.1	5.96e-26	100.00	cation/H(+) antiporter 20-like [Cucurbita maxima]	[more]
XP_023545155.1	5.96e-26	100.00	cation/H(+) antiporter 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g200410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPD5	2.89e-26	100.00	cation/H(+) antiporter 20-like OS=Cucurbita maxima OX=3661 GN=LOC111478742 PE=4 ...	[more]
A0A6J1GDC1	2.89e-26	100.00	cation/H(+) antiporter 20-like OS=Cucurbita moschata OX=3662 GN=LOC111453157 PE=...	[more]
A0A0A0KXF6	1.07e-23	90.00	Na_H_Exchanger domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294...	[more]
A0A6J1HHL1	9.40e-23	90.00	cation/H(+) antiporter 20-like OS=Cucurbita moschata OX=3662 GN=LOC111463599 PE=...	[more]
A0A5D3DIW8	2.09e-22	86.44	Cation/H(+) antiporter 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Csor.00g200410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53720.1	1.5e-18	75.00	cation/H+ exchanger 20	[more]
AT4G23700.1	7.0e-13	69.81	cation/H+ exchanger 17	[more]
AT5G41610.1	1.6e-12	62.26	cation/H+ exchanger 18	[more]
AT1G64170.1	1.7e-11	54.39	cation/H+ exchanger 16	[more]
AT3G17630.1	8.6e-11	53.13	cation/H+ exchanger 19	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32468	CATION/H + ANTIPORTER	coord: 3..61
None	No IPR available	PANTHER	PTHR32468:SF125	BNAC06G14930D PROTEIN	coord: 3..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g200410.m01	Csor.00g200410.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006885	regulation of pH
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015299	solute:proton antiporter activity