Csor.00g200400 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCTACTCCAGAATTGCATCGACCAACAACCCCCATCAGCGACACCAAAATCCCCACCCGCGCTTCACTTTCTTACTTCCAGAAAACAGTAAGCGCTCCTTCAAACTTTCCTTCAATTACTTTTATTCATCTGATTCTGATTGTATGCCTAATTGATCGGAAAATAAGGTTTGTTTGCTCGATTGGTGGTTAATCAGAGCTGAAAATGACTCCAATGGGAAATCGCTTGCCGTCGCTGGGCTAACATCCACACCGTAATCATACTTTGTCTCCCGTTCTAGGGCTTTCTTTGTGATTGTTTCTGTTTTCTTTCACATTTTGCCTCAATCTGTTGCCATTTCGTGAAGCGACTCGAAAATTTCCTCCGGAGTTTTCTTTCTGCGCTCTTCTACGTTTTTCTTTTTATTGGTTTGTTTTAGGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATTGTTAAGAGATTCGATGTTTTCACTCTGGAGACTGCTGATGGGATCTGTGTTGTTCTTAAGGGTTTCATAAACAAACTTCGTACTACTGATAGTGGCTTTACGGCCGAGGTTTGGATGTCAAATTTGTGGTTCTTGTTTCCTATATTTCCTGGTGCTCTCATTTGGGTTTAATGTAGCTTTCACTATAAACAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTTATGCAGCAAATTGCTTCCAGGGAGAAGCTTTTGATAATACTGCTGCTGGGGGAAATATTTCTGATACAGACACTTCGCGTTGTAGATCGAAAAGTAAGTGCATTTTCAAATTTCTATTGGTAGATAAGCGCATGTGGGACACTCTTTTTCTTGTTGGATTCATGTCAAACACTTGTTAAGCACAATCGACCTTGACTAAAAGGTCCAAAGTTCTTCCTAGCAATCTATAACAACCTATATTGTTCTCTTTGAGCTTTCCCTTCCGGGTTTCCCCTCAAAGTTTTAAAATGTCCACTAAGGAGAGGTTTTCATACCCTTATAAGGAATGTTTCGCTCCCCTCTACAACAGTGTGGGATCTCACAATCTACCCCCTTGAGGTTTCCACACTCTTGTAAGCAATATTTTGTTCCCCTCTCCAACCTATGTGGGATCTCACGATCCACCTCCCTTGAGGGCCTAGTGTCCTCGCTGGCACACCACTCGGTGTCTGGCTCTAATGCTATTTTTAACAGCCCAAGTGCACTGCTAACGGATATTGTCCTCTTTGGACTTTCCCTTCTAGGCTTCCCCTCAAGGGTTTAATACGCGTCCTCTAGAGAGAAGGTTTCACACCCTTTTAAGGAATGTGTCGTTCCCTTGTCTAACCGATGTGTTGAACCACAAAGAAAAATATCTGTCTGGTTTTGGGTTTTCTTTAAATCTTTTATAACATGACATTGCATTATTAAAAATATGTAGTTGATTTCAACTTCATGAATGTAAGAACTGAGAAAAAGTTGTGAATAAGGTAATGGATTGGATGAAGGAGATTCTATGGCTCAAGATATGATGCAGACAACAAATGCAACTGAAGCTCCAGTTCCTTTCACTGGTTCTGATATTCAAGAAGAAAAAGTAGAAAACAAAAGAAGAAAAGAGAAAGAATCTAGGAGGAAAGTGAAGAAGAAGATCGTTTTCGATTCACCTGTAAGTTATTTCTGGCATTTGTTTGTCAATTCTGTTGATGATTAGAACTGGATTGGTGTGATAATGTGTGGTTCGATTGAAGAAACTCATAAAATGTGTATGGGATGGTGGTTGTTGATTCAGGGAAGTGGCGTTGGTGTGCGTGCAAGGCAAAGGGAGGAGAAAAGGTGTATGATATCTCCAGAATGTTTGAGTTATGGGCGATCACGATCAGGTGAGAATGATAAGAACAAAGTAGAGGCTAATGCCGATGGGGTTGTTGTTTTGTTTTGTTATGTTATGTTATGGCCAATAGATTTGAATTCATGGATTCAGGGCGATTACTTCTGCCCACCATGGAGTTTTGGCGCAACCAGCTGCCTGTTTACGACTCGGTAACTTTTTTATTTACTGAATTGAAATATTAATGAAAATATCTCTGCACTCTCAAAGTTATTTTTATTAATTTGTAATATAGGATCGAAAGTTACGAGGAATCCAGGAAGACTTGCCAGACATACAGCCACAACAATCACAGCCAAGAGGTTTGTTTATTATTTATTTTTTAAAAAATTAATTAATTAAATAACAAATTAATTTAGAATATAAAATAAAACTAAGTTGGATGGTGCGCAGGCAGCAAGAGCGGTGGTGGAAGAAAGCGGTAA ATGGATTCTACTCCAGAATTGCATCGACCAACAACCCCCATCAGCGACACCAAAATCCCCACCCGCGCTTCACTTTCTTACTTCCAGAAAACAGTTTGTTTGCTCGATTGGTGGTTAATCAGAGCTGAAAATGACTCCAATGGGAAATCGCTTGCCGTCGCTGGGCTAACATCCACACCGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATTGTTAAGAGATTCGATGTTTTCACTCTGGAGACTGCTGATGGGATCTGTGTTGTTCTTAAGGGTTTCATAAACAAACTTCGTACTACTGATAGTGGCTTTACGGCCGAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTTATGCAGCAAATTGCTTCCAGGGAGAAGCTTTTGATAATACTGCTGCTGGGGGAAATATTTCTGATACAGACACTTCGCGTTGTAGATCGAAAAGTAATGGATTGGATGAAGGAGATTCTATGGCTCAAGATATGATGCAGACAACAAATGCAACTGAAGCTCCAGTTCCTTTCACTGGTTCTGATATTCAAGAAGAAAAAGTAGAAAACAAAAGAAGAAAAGAGAAAGAATCTAGGAGGAAAGTGAAGAAGAAGATCGTTTTCGATTCACCTGGAAGTGGCGTTGGTGTGCGTGCAAGGCAAAGGGAGGAGAAAAGGTGTATGATATCTCCAGAATGTTTGAGTTATGGGCGATCACGATCAGGGCGATTACTTCTGCCCACCATGGAGTTTTGGCGCAACCAGCTGCCTGTTTACGACTCGGATCGAAAGTTACGAGGAATCCAGGAAGACTTGCCAGACATACAGCCACAACAATCACAGCCAAGAGGCAGCAAGAGCGGTGGTGGAAGAAAGCGGTAA ATGGATTCTACTCCAGAATTGCATCGACCAACAACCCCCATCAGCGACACCAAAATCCCCACCCGCGCTTCACTTTCTTACTTCCAGAAAACAGTTTGTTTGCTCGATTGGTGGTTAATCAGAGCTGAAAATGACTCCAATGGGAAATCGCTTGCCGTCGCTGGGCTAACATCCACACCGGGACAACCTGTTCGAGTATTTTCTTCTGCTCCCATTGTTAAGAGATTCGATGTTTTCACTCTGGAGACTGCTGATGGGATCTGTGTTGTTCTTAAGGGTTTCATAAACAAACTTCGTACTACTGATAGTGGCTTTACGGCCGAGGTTTTCAAGCATTTTGTGTTTGGGTTTCCTCCCAACTGGGAAACTTATGCAGCAAATTGCTTCCAGGGAGAAGCTTTTGATAATACTGCTGCTGGGGGAAATATTTCTGATACAGACACTTCGCGTTGTAGATCGAAAAGTAATGGATTGGATGAAGGAGATTCTATGGCTCAAGATATGATGCAGACAACAAATGCAACTGAAGCTCCAGTTCCTTTCACTGGTTCTGATATTCAAGAAGAAAAAGTAGAAAACAAAAGAAGAAAAGAGAAAGAATCTAGGAGGAAAGTGAAGAAGAAGATCGTTTTCGATTCACCTGGAAGTGGCGTTGGTGTGCGTGCAAGGCAAAGGGAGGAGAAAAGGTGTATGATATCTCCAGAATGTTTGAGTTATGGGCGATCACGATCAGGGCGATTACTTCTGCCCACCATGGAGTTTTGGCGCAACCAGCTGCCTGTTTACGACTCGGATCGAAAGTTACGAGGAATCCAGGAAGACTTGCCAGACATACAGCCACAACAATCACAGCCAAGAGGCAGCAAGAGCGGTGGTGGAAGAAAGCGGTAA MDSTPELHRPTTPISDTKIPTRASLSYFQKTVCLLDWWLIRAENDSNGKSLAVAGLTSTPGQPVRVFSSAPIVKRFDVFTLETADGICVVLKGFINKLRTTDSGFTAEVFKHFVFGFPPNWETYAANCFQGEAFDNTAAGGNISDTDTSRCRSKSNGLDEGDSMAQDMMQTTNATEAPVPFTGSDIQEEKVENKRRKEKESRRKVKKKIVFDSPGSGVGVRARQREEKRCMISPECLSYGRSRSGRLLLPTMEFWRNQLPVYDSDRKLRGIQEDLPDIQPQQSQPRGSKSGGGRKR Homology
BLAST of Csor.00g200400 vs. ExPASy Swiss-Prot
Match: F4KCE9 (Kinetochore-associated protein KNL-2 homolog OS=Arabidopsis thaliana OX=3702 GN=KNL2 PE=1 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 4.2e-23 Identity = 69/211 (32.70%), Postives = 107/211 (50.71%), Query Frame = 0
HSP 2 Score: 53.1 bits (126), Expect = 6.1e-06 Identity = 53/174 (30.46%), Postives = 80/174 (45.98%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy Swiss-Prot
Match: Q8RWD7 (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana OX=3702 GN=EMB1674 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.6e-14 Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 0
BLAST of Csor.00g200400 vs. NCBI nr
Match: KAG6603665.1 (Kinetochore-associated protein KNL-2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 585 bits (1507), Expect = 1.99e-210 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
BLAST of Csor.00g200400 vs. NCBI nr
Match: XP_022949907.1 (uncharacterized protein LOC111453163 [Cucurbita moschata]) HSP 1 Score: 575 bits (1481), Expect = 1.83e-206 Identity = 291/296 (98.31%), Postives = 293/296 (98.99%), Query Frame = 0
BLAST of Csor.00g200400 vs. NCBI nr
Match: XP_023544371.1 (mis18-binding protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 564 bits (1453), Expect = 3.39e-202 Identity = 286/296 (96.62%), Postives = 291/296 (98.31%), Query Frame = 0
BLAST of Csor.00g200400 vs. NCBI nr
Match: XP_022978049.1 (uncharacterized protein LOC111478148 [Cucurbita maxima]) HSP 1 Score: 556 bits (1434), Expect = 2.77e-199 Identity = 284/297 (95.62%), Postives = 290/297 (97.64%), Query Frame = 0
BLAST of Csor.00g200400 vs. NCBI nr
Match: KAG7033844.1 (Protein EMBRYO DEFECTIVE [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 559 bits (1441), Expect = 1.14e-196 Identity = 286/296 (96.62%), Postives = 288/296 (97.30%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy TrEMBL
Match: A0A6J1GDE0 (uncharacterized protein LOC111453163 OS=Cucurbita moschata OX=3662 GN=LOC111453163 PE=4 SV=1) HSP 1 Score: 575 bits (1481), Expect = 8.85e-207 Identity = 291/296 (98.31%), Postives = 293/296 (98.99%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy TrEMBL
Match: A0A6J1IT09 (uncharacterized protein LOC111478148 OS=Cucurbita maxima OX=3661 GN=LOC111478148 PE=4 SV=1) HSP 1 Score: 556 bits (1434), Expect = 1.34e-199 Identity = 284/297 (95.62%), Postives = 290/297 (97.64%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy TrEMBL
Match: A0A0A0KX65 (SANTA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G294920 PE=4 SV=1) HSP 1 Score: 402 bits (1034), Expect = 1.02e-138 Identity = 205/280 (73.21%), Postives = 234/280 (83.57%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy TrEMBL
Match: A0A5D3DIU6 (Protein EMBRYO DEFECTIVE 1674-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00080 PE=4 SV=1) HSP 1 Score: 392 bits (1008), Expect = 1.79e-134 Identity = 214/319 (67.08%), Postives = 247/319 (77.43%), Query Frame = 0
BLAST of Csor.00g200400 vs. ExPASy TrEMBL
Match: A0A6J1CQY8 (uncharacterized protein LOC111013765 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013765 PE=4 SV=1) HSP 1 Score: 379 bits (973), Expect = 2.15e-129 Identity = 198/294 (67.35%), Postives = 230/294 (78.23%), Query Frame = 0
BLAST of Csor.00g200400 vs. TAIR 10
Match: AT5G02520.1 (CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). ) HSP 1 Score: 110.2 bits (274), Expect = 3.0e-24 Identity = 69/211 (32.70%), Postives = 107/211 (50.71%), Query Frame = 0
HSP 2 Score: 53.1 bits (126), Expect = 4.3e-07 Identity = 53/174 (30.46%), Postives = 80/174 (45.98%), Query Frame = 0
BLAST of Csor.00g200400 vs. TAIR 10
Match: AT1G58210.1 (kinase interacting family protein ) HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15 Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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