Csor.00g199470 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g199470
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcription factor bHLH140
Location	Csor_Chr03: 4525457 .. 4526029 (+)
RNA-Seq Expression	Csor.00g199470
Synteny	Csor.00g199470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCAGCGGCAGCGGCAGCGGCGGAGGGAAAAGGACTAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTGGTCCCCGGCGGCACCAAAATGGACACCGTCTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCTCCGCCGCCGCCACCGCCGCCGCCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTAGTTAAAATGGAGGAGGCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

mRNA sequence

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCAGCGGCAGCGGCAGCGGCGGAGGGAAAAGGACTAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTGGTCCCCGGCGGCACCAAAATGGACACCGTCTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCTCCGCCGCCGCCACCGCCGCCGCCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTAGTTAAAATGGAGGAGGCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

Coding sequence (CDS)

ATGGATTACAGCTTTCCGGCGAGCAACCCCAGCTCGTGTGGCTCCTCCTCCGGTGGCGACGGAGGAGAAACCAGAAAGGAGAAGATGAAGAAGAACGGTGGCGGCAGCGGCAGCGGCAGCGGCGGAGGGAAAAGGACTAAAGGCGTTATGAAACTATCAACCGACCCACAAAGCGTGGCGGCGCGAGAAAGACGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAAAGCTTGGTCCCCGGCGGCACCAAAATGGACACCGTCTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTATGATGATCCTTCTTCCTCCTCCTCCGCCGCCGCCACCGCCGCCGCCAACTGTCCGAATTCCGGCATCCCTGTCGGCGGTGACATGAATTTTGTGTTCCCTGAAAACGAGGTAGTTAAAATGGAGGAGGCGTTCTTGCCTCACCTCGATCCCGACAATATCTATTTCCCTTCCGGACAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAA

Protein sequence

MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFMCSSYDAYMNF

Homology

[Close]

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-25
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 2   DYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVAA 61
           D++  + NP+S  ++S       R +          S +G  KR++    LSTDPQSVAA
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK----------SETGNTKRSRSTSTLSTDPQSVAA 62

Query: 62  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPS 121
           R+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +
Sbjct: 63  RDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETT 114

Query: 122 SS 124
           SS
Sbjct: 123 SS 114

[Close]

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-23
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 0


Query: 33  GGGSGSGSGGGKRTKGVMKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLD 92
           G G G   GGG+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML+
Sbjct: 22  GLGEGRMRGGGRRRPGA-KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLE 81

Query: 93  EAIHYVKFLKTQIWLHQTMINFVDYDDPSSSSSAAATAAA 133
           +AIHYVKFLK Q+ LHQ  +  V +++    +  AA  +A
Sbjct: 82  QAIHYVKFLKAQVTLHQAAL--VQHEEGCQHADVAAAFSA 118

[Close]

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLN 182

Query: 110 TMINFVDYDDPSSSSSAAATAAANCP 136
               +        +S A  T+  + P
Sbjct: 183 NNTGYTPPPPQDQASQAVTTSWVSPP 208

[Close]

BLAST of Csor.00g199470 vs. NCBI nr
Match: KAG6603572.1 (Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377 bits (968), Expect = 8.49e-132
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180
           SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM
Sbjct: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180

Query: 181 CSSYDAYMNF 190
           CSSYDAYMNF
Sbjct: 181 CSSYDAYMNF 190

[Close]

BLAST of Csor.00g199470 vs. NCBI nr
Match: XP_023545106.1 (transcription factor LAX PANICLE 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358 bits (918), Expect = 3.33e-124
Identity = 181/190 (95.26%), Postives = 184/190 (96.84%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGG GSGSGGGKR+KGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGGGSGSGGGKRSKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGG KMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGNKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180
           SSSS+AA   A NCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM
Sbjct: 121 SSSSAAAT--AVNCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180

Query: 181 CSSYDAYMNF 190
           CSS+DAYMNF
Sbjct: 181 CSSFDAYMNF 188

[Close]

BLAST of Csor.00g199470 vs. NCBI nr
Match: XP_022978297.1 (transcription factor LAX PANICLE 1 [Cucurbita maxima])

HSP 1 Score: 348 bits (894), Expect = 1.32e-120
Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETR+EKMKKNGGGSG    GGKR+KGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSG----GGKRSKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180
           SSSS  AATAA NCPNSGIPVGGDMNFVF ENEVVKMEE FLPHLDPDNIYFPSGQDQFM
Sbjct: 121 SSSS--AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFM 180

Query: 181 CSSYDAYMNF 190
           CSSYDAYMNF
Sbjct: 181 CSSYDAYMNF 184

[Close]

BLAST of Csor.00g199470 vs. NCBI nr
Match: KAG6595412.1 (Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270 bits (691), Expect = 1.58e-89
Identity = 152/200 (76.00%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGG-DGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSV 60
           MDY+FPASNPSSCGSSSGG   G TRKEK+KKN     SGS GGKR+KGV+KLSTDPQSV
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNS----SGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 PSSSSSAAATAAANCPNSGIPVGG------DMN-FVFPENEVVKMEEA--FLPHLDPDNI 180
             SS+S AA AA NC      + G      D N FV+ +N+VVKMEE    LPHLDP+N+
Sbjct: 121 --SSNSTAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPHLDPNNL 180

Query: 181 YFPSGQDQFMCSSYDAYMNF 190
           YFPSGQDQ+MCSSYD YMNF
Sbjct: 181 YFPSGQDQYMCSSYDPYMNF 194

[Close]

BLAST of Csor.00g199470 vs. NCBI nr
Match: XP_022966526.1 (transcription factor LAX PANICLE 1-like [Cucurbita maxima])

HSP 1 Score: 270 bits (691), Expect = 1.69e-89
Identity = 150/200 (75.00%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGE-TRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSV 60
           MDY+FPASNPSSCGSSSGG   E TRKEK+KKN     SGS GGKR+KGV+KLSTDPQSV
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKKNS----SGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 PSSSSSAAATAAANCPNSGIPVGG------DMN-FVFPENEVVKMEEA--FLPHLDPDNI 180
            S+S++A   AA NC      + G      D N FV+ +N+VVKMEE    LP LDP+N+
Sbjct: 121 SSNSTAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNL 180

Query: 181 YFPSGQDQFMCSSYDAYMNF 190
           YFPSGQDQ+MCSSYDAYMNF
Sbjct: 181 YFPSGQDQYMCSSYDAYMNF 196

[Close]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL
Match: A0A6J1IKQ9 (transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 PE=4 SV=1)

HSP 1 Score: 348 bits (894), Expect = 6.38e-121
Identity = 179/190 (94.21%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDYSFPASNPSSCGSSSGGDGGETR+EKMKKNGGGSG    GGKR+KGVMKLSTDPQSVA
Sbjct: 1   MDYSFPASNPSSCGSSSGGDGGETRREKMKKNGGGSG----GGKRSKGVMKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120

Query: 121 SSSSSAAATAAANCPNSGIPVGGDMNFVFPENEVVKMEEAFLPHLDPDNIYFPSGQDQFM 180
           SSSS  AATAA NCPNSGIPVGGDMNFVF ENEVVKMEE FLPHLDPDNIYFPSGQDQFM
Sbjct: 121 SSSS--AATAAVNCPNSGIPVGGDMNFVFSENEVVKMEEPFLPHLDPDNIYFPSGQDQFM 180

Query: 181 CSSYDAYMNF 190
           CSSYDAYMNF
Sbjct: 181 CSSYDAYMNF 184

[Close]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 8.20e-90
Identity = 150/200 (75.00%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGE-TRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSV 60
           MDY+FPASNPSSCGSSSGG   E TRKEK+KKN     SGS GGKR+KGV+KLSTDPQSV
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKKNS----SGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 PSSSSSAAATAAANCPNSGIPVGG------DMN-FVFPENEVVKMEEA--FLPHLDPDNI 180
            S+S++A   AA NC      + G      D N FV+ +N+VVKMEE    LP LDP+N+
Sbjct: 121 SSNSTAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNL 180

Query: 181 YFPSGQDQFMCSSYDAYMNF 190
           YFPSGQDQ+MCSSYDAYMNF
Sbjct: 181 YFPSGQDQYMCSSYDAYMNF 196

[Close]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.27e-88
Identity = 151/200 (75.50%), Postives = 163/200 (81.50%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGG-DGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSV 60
           MDY+FPASNPSSCGSSSGG   G TRKEK+KKN     SGS GGKR+KGV+KLSTDPQSV
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNS----SGSCGGKRSKGVVKLSTDPQSV 60

Query: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120
           AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD
Sbjct: 61  AARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDD 120

Query: 121 PSSSSSAAATAAANCPNSGIPVGG------DMN-FVFPENEVVKMEEA--FLPHLDPDNI 180
             SS+S AA AA NC      + G      D N FV+ +N+VVKMEE    LP LDP+N+
Sbjct: 121 --SSNSTAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNL 180

Query: 181 YFPSGQDQFMCSSYDAYMNF 190
           YFPSGQDQ+MCSSYD YMNF
Sbjct: 181 YFPSGQDQYMCSSYDPYMNF 194

[Close]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 1.07e-80
Identity = 146/199 (73.37%), Postives = 161/199 (80.90%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDY+FPASNPSSCGSSSGG GG   KEKMKKN    G   G GKR+KGV+KLSTDPQSVA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGG-KEKMKKNNNNHG---GAGKRSKGVVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSN 120

Query: 121 SSSS-SAAATAAANCPNSGIPVG--GDMN-FVFPENEVVKMEEA-FLPHLDPDN---IYF 180
           SS++ SAAATA +  P   I  G   +MN  ++P+N+VVKMEE  FLP LDP+N   +YF
Sbjct: 121 SSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYF 180

Query: 181 PSG-QDQFMCSSYDAYMNF 190
           PS  QDQF+ SSYD Y+NF
Sbjct: 181 PSDHQDQFISSSYDPYINF 195

[Close]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 246 bits (629), Expect = 2.09e-80
Identity = 145/199 (72.86%), Postives = 162/199 (81.41%), Query Frame = 0


Query: 1   MDYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVA 60
           MDY+FPASNPSSCGSSSGG GG   KEKMKKN   +  G+  GKR+KGV+KLSTDPQSVA
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGG---KEKMKKNNNNNHGGA--GKRSKGVVKLSTDPQSVA 60

Query: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDP 120
           ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYD  
Sbjct: 61  ARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSN 120

Query: 121 SSSS-SAAATAAANCPNSGIPVG--GDMN-FVFPENEVVKMEEA-FLPHLDPDN---IYF 180
           SS++ SAAATA +  P   I  G   +MN  ++P+N+VVKMEE  FLP LDP+N   +YF
Sbjct: 121 SSAAVSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNNNVYF 180

Query: 181 PSG-QDQFMCSSYDAYMNF 190
           PS  QDQF+ SSYD Y+NF
Sbjct: 181 PSDHQDQFISSSYDPYINF 194

[Close]

BLAST of Csor.00g199470 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-26
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 0


Query: 2   DYSFPASNPSSCGSSSGGDGGETRKEKMKKNGGGSGSGSGGGKRTKGVMKLSTDPQSVAA 61
           D++  + NP+S  ++S       R +          S +G  KR++    LSTDPQSVAA
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSFHRHK----------SETGNTKRSRSTSTLSTDPQSVAA 62

Query: 62  RERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPS 121
           R+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++  + +
Sbjct: 63  RDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETT 114

Query: 122 SS 124
           SS
Sbjct: 123 SS 114

[Close]

BLAST of Csor.00g199470 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Csor.00g199470 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 106
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Csor.00g199470 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLN 182

Query: 110 TMINFVDYDDPSSSSSAAATAAANCP 136
               +        +S A  T+  + P
Sbjct: 183 NNTGYTPPPPQDQASQAVTTSWVSPP 208

[Close]

BLAST of Csor.00g199470 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 42/76 (55.26%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 50  MKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 109
           +K+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 110 TMINFVDYDDPSSSSS 126
            +   +D  + S SS+
Sbjct: 333 NLRPKLDQTNLSFSSA 348

The following BLAST results are available for this feature:

BLAST of Csor.00g199470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	2.2e-25	54.10	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	2.7e-23	62.00	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9FHA7	2.2e-17	76.79	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	2.2e-17	76.79	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	3.8e-17	55.81	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]

BLAST of Csor.00g199470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603572.1	8.49e-132	100.00	Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma...	[more]
XP_023545106.1	3.33e-124	95.26	transcription factor LAX PANICLE 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022978297.1	1.32e-120	94.21	transcription factor LAX PANICLE 1 [Cucurbita maxima]	[more]
KAG6595412.1	1.58e-89	76.00	Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma...	[more]
XP_022966526.1	1.69e-89	75.00	transcription factor LAX PANICLE 1-like [Cucurbita maxima]	[more]

BLAST of Csor.00g199470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IKQ9	6.38e-121	94.21	transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 P...	[more]
A0A6J1HPK4	8.20e-90	75.00	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EVF6	1.27e-88	75.50	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A0A0KXM0	1.07e-80	73.37	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5A7T6E1	2.09e-80	72.86	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Csor.00g199470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	1.6e-26	54.10	APRATAXIN-like	[more]
AT3G50330.1	1.6e-18	76.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	1.6e-18	76.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	2.7e-18	55.81	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	1.7e-17	55.26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 58..107 e-value: 1.6E-12 score: 57.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 62..101 e-value: 1.4E-7 score: 31.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 52..101 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 55..113 e-value: 3.1E-10 score: 42.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 57..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 32..145
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 32..145
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 53..112 e-value: 2.44556E-40 score: 129.434

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g199470.m01	Csor.00g199470.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity