Csor.00g194040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g194040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transcription factor UPBEAT1-like
Location	Csor_Chr01: 2281845 .. 2282150 (-)
RNA-Seq Expression	Csor.00g194040
Synteny	Csor.00g194040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

mRNA sequence

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Coding sequence (CDS)

ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGACGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCGTGCTTTTGAAGAATCAGGTGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG

Protein sequence

MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA

Homology

[Close]

BLAST of Csor.00g194040 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200 bits (509), Expect = 1.09e-64
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60
           MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 61  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA
Sbjct: 61  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

[Close]

BLAST of Csor.00g194040 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 6.62e-58
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60
           MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR
Sbjct: 1   MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHR 60

Query: 61  RSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           RSEELFQETADYIV      FVLQRLIEFYGSDERENAVSA
Sbjct: 61  RSEELFQETADYIV------FVLQRLIEFYGSDERENAVSA 95

[Close]

BLAST of Csor.00g194040 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 2.82e-36
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL     SR +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVL----PSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGV-RRA 71

Query: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Csor.00g194040 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 2.82e-36
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL     SR +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVL----PSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGV-RRA 71

Query: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Csor.00g194040 vs. NCBI nr
Match: PON40768.1 (transcription factor UPBEAT-like protein [Parasponia andersonii])

HSP 1 Score: 87.8 bits (216), Expect = 4.97e-20
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 7   TRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELF 66
           TRR   ++R  SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++++LF
Sbjct: 15  TRRRGRKTR--SRDCVARRSCNNGGGTCSSKVSGKLEALKKLIPGH---EGEIVKTDQLF 74

Query: 67  QETADYIVLLKNQVFVLQRLIEFYGSDERENAVS 100
           Q+TADYIVLL+ QV +LQ+LIEFYGS + E+AVS
Sbjct: 75  QQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 1.37e-36
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL     SR +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVL----PSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGV-RRA 71

Query: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 1.37e-36
Identity = 68/99 (68.69%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62
           WKQSTRR VL     SR +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+
Sbjct: 12  WKQSTRRTVL----PSRKVRGGRNHQNGGMACASDLSAKLESLQSLIPSRSDEEGV-RRA 71

Query: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
           E+LF++TADYIVLLK+QVFVLQRLIEFYGSD+RENAVS+
Sbjct: 72  EDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.41e-20
Identity = 52/94 (55.32%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 7   TRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELF 66
           TRR   ++R  SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++++LF
Sbjct: 15  TRRRGRKTR--SRDCVARRSCNNGGGTCSSKVSGKLEALKKLIPGH---EGEIVKTDQLF 74

Query: 67  QETADYIVLLKNQVFVLQRLIEFYGSDERENAVS 100
           Q+TADYIVLL+ QV +LQ+LIEFYGS + E+AVS
Sbjct: 75  QQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL
Match: A0A6J5UGL2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.13e-20
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGE 60
           ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   + G+
Sbjct: 12  LAGRRRTRRISSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLISPSHAGK 71

Query: 61  GHHRRSEELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101
               +++ELFQETADYIVLL+ QV +LQRL+E YGS E+EN  +A
Sbjct: 72  T--LKADELFQETADYIVLLRTQVVILQRLVELYGSSEKENIAAA 114

[Close]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.70e-20
Identity = 48/96 (50.00%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 4   KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 63
           ++ TRR   R R  +R  RARR   NGG+ C+  VS +LEAL++LIP  N   G   + +
Sbjct: 17  RKLTRRTSTRRRLQARPCRARRSFNNGGRTCAK-VSDKLEALKNLIPAHN---GETVKPD 76

Query: 64  ELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAV 99
           +LF+ETA+YIVLL+ QV +LQRL+EFYGS    N V
Sbjct: 77  QLFKETAEYIVLLRTQVVILQRLVEFYGSSGMNNVV 108

[Close]

BLAST of Csor.00g194040 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 4   KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSE 63
           K  T R   R+   SR         NG       V  +L AL+SL+P   N  G    +E
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG--GETE 64

Query: 64  ELFQETADYIVLLKNQVFVLQRLIEFY--GSDERENAV 100
           ELFQETA+YIV L+ QV VL++LIE Y   SD++++ V
Sbjct: 65  ELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVV 100

[Close]

BLAST of Csor.00g194040 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 13  RSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRR----------- 72
           RSR G R  +     +  G       S +L+AL+SL+P  +      R+           
Sbjct: 8   RSRGGRRTSKKFGNRRTSG---GEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 73  -SEELFQETADYIVLLKNQVFVLQRLIEFYGSDERE 97
            +E+LFQETADYIV L+ QV VLQ+LIE YGS +++
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

The following BLAST results are available for this feature:

BLAST of Csor.00g194040 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g194040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607102.1	1.09e-64	100.00	hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036793.1	6.62e-58	94.06	hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0056655.1	2.82e-36	68.69	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
TYK04615.1	2.82e-36	68.69	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
PON40768.1	4.97e-20	55.32	transcription factor UPBEAT-like protein [Parasponia andersonii]	[more]

BLAST of Csor.00g194040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT08	1.37e-36	68.69	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZU8	1.37e-36	68.69	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2P5AW87	2.41e-20	55.32	Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
A0A6J5UGL2	5.13e-20	50.48	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23457 PE=4 S...	[more]
A0A5N6QW57	5.70e-20	50.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1	[more]

BLAST of Csor.00g194040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29370.1	1.7e-08	40.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G39240.1	5.1e-08	38.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 10..97
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 10..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g194040.m01	Csor.00g194040.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005488	binding