Csor.00g193280 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g193280
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionLOB domain-containing protein 1-like
LocationCsor_Chr01: 2753527 .. 2754650 (+)
RNA-Seq ExpressionCsor.00g193280
SyntenyCsor.00g193280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCTTGTGTTCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGTACCTTCTCTATCCATAGTTTCCTCTTATTTACAGCTTTCGGTATTAGGTTTTGAAATTTTGAATTCCGATGCGAGAAAATTAATCTTGGAACCGTAACGAAAAGTCTTCGAATTAGGAGGAAAATACTGTTTACATGAACTGTTTTCATTTTTGAATTAATTGAACGAATCTCAATCGAGTAGAACTGTGTGTTTTTAGAAGCAGAACAGTGCCTTGAATGACTTGGTAATTGTATCGAGGCAATGAACACGGATGGGGCTCACACGCAAAACTTGTCCAATTCCAATAATGTGCCCTTGTTTTGCCTGGAAATCTGAAAATTACGCAATCCTAATCTATTTGTTTGTTTGCGCTCAATGGCCAAGTGGTGCAATTAATCAAACATAATACAAACTGGAAAAACCAAACCAAGCAACCCTTGTGTTTGATTTTTGTCCTCACAGAACAGCCGATCGTATACTTCAGTCTGTTTCTCCAATTCAAATCCACCACAAACCAAACACTTCTGATACCAATCACTTAATTGAATTCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGATGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATACCAATATCTGGGAGGCTCTCTGGACATGA

mRNA sequence

ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCTTGTGTTCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGATGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATACCAATATCTGGGAGGCTCTCTGGACATGA

Coding sequence (CDS)

ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCTTGTGTTCAGGCCGGCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGATGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATACCAATATCTGGGAGGCTCTCTGGACATGA

Protein sequence

MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLFDDTNIWEALWT
Homology
BLAST of Csor.00g193280 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 111/191 (58.12%), Postives = 132/191 (69.11%), Query Frame = 0

Query: 4   SDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKF 63
           SDA    T II  S S  PPP +   VV++PCAACKILRRRCAE+CVLAPYFPP+DP KF
Sbjct: 5   SDASVATTPII--SSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKF 64

Query: 64  TIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINEL 123
           TIAHRVFGASNIIK LQ+LPESQR DAV+S+VYEA ARIRDPVYGCAGAI HLQ+Q++EL
Sbjct: 65  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSEL 124

Query: 124 QAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLF 183
           QA++AK   E+VNMQ  ++NL+ LI     Q         D+ S ++N            
Sbjct: 125 QAQLAKAQVEMVNMQFQRSNLLELIYNMDQQ----QKQEQDNMSFESNDLGFLEDKSNTN 184

Query: 184 DDTNIWEALWT 195
                W+ LWT
Sbjct: 185 SSMLWWDPLWT 189

BLAST of Csor.00g193280 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-50
Identity = 98/136 (72.06%), Postives = 116/136 (85.29%), Query Frame = 0

Query: 17  SQSPPPPPC----VQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGA 76
           + SPPPPP      Q  VV++PCAACKILRRRCA+KCVLAPYFPP+DP KFTIAHRVFGA
Sbjct: 34  TSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGA 93

Query: 77  SNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHA 136
           SNIIK LQ+LPESQR DAV+S+VYEA AR+RDPVYGCAGAI HLQ+Q++ELQA++AKT  
Sbjct: 94  SNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQV 153

Query: 137 ELVNMQCHQANLVALI 149
           ELV MQ  +++L+ LI
Sbjct: 154 ELVGMQLQRSSLLELI 169

BLAST of Csor.00g193280 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.7e-36
Identity = 67/106 (63.21%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 33  TPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVS 92
           +PCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQ+LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 93  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQ 139
           SLV+EA+AR+RDPVYGC GAI +LQ Q+++LQ ++A   AE++ +Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

BLAST of Csor.00g193280 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-35
Identity = 69/110 (62.73%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 33  TPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVS 92
           +PCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQ+LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 93  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQA 143
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA++A   AE+V+++  Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

BLAST of Csor.00g193280 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.9e-33
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 32  VTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAV 91
           +TPCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L ++PESQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 92  SSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKE 151
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAE+    +E++  +  +A +  LI   
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-VATLIVPS 162

Query: 152 LTQTP--------APTPPPPDHCSLDNNFSTATPQS 180
            +Q          +   PPP   +     +TA P S
Sbjct: 163 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPS 197

BLAST of Csor.00g193280 vs. NCBI nr
Match: KAG6607178.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399 bits (1026), Expect = 1.65e-140
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDP 60
           MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDP
Sbjct: 1   MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDP 60

Query: 61  LKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQI 120
           LKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQI
Sbjct: 61  LKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQI 120

Query: 121 NELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSY 180
           NELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSY
Sbjct: 121 NELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSY 180

Query: 181 PLFDDTNIWEALWT 194
           PLFDDTNIWEALWT
Sbjct: 181 PLFDDTNIWEALWT 194

BLAST of Csor.00g193280 vs. NCBI nr
Match: KAG7036865.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395 bits (1014), Expect = 1.15e-138
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSPPPPPCVQAGVVV-TPCAACKILRRRCAEKCVLAPYFPPSD 60
           MECSDAKSGPTSIILRSQSPPPPPCVQAGVVV TPCAACKILRRRCAEKCVLAPYFPPSD
Sbjct: 1   MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVVTPCAACKILRRRCAEKCVLAPYFPPSD 60

Query: 61  PLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQ 120
           PLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQ
Sbjct: 61  PLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQ 120

Query: 121 INELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQS 180
           INELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQS
Sbjct: 121 INELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQS 180

Query: 181 YPLFDDTNIWEALWT 194
           YPLFDDTNIWEALWT
Sbjct: 181 YPLFDDTNIWEALWT 195

BLAST of Csor.00g193280 vs. NCBI nr
Match: XP_022949099.1 (LOB domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 393 bits (1009), Expect = 6.92e-138
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQS--PPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60
           MECSDAKSGPTSIILRSQS  PPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS
Sbjct: 1   MECSDAKSGPTSIILRSQSSPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60

Query: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120
           DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK
Sbjct: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180
           QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180

Query: 181 SYPLFDDTNIWEALWT 194
           SYPLFDD+NIWEALWT
Sbjct: 181 SYPLFDDSNIWEALWT 196

BLAST of Csor.00g193280 vs. NCBI nr
Match: XP_023523637.1 (LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391 bits (1005), Expect = 2.82e-137
Identity = 192/196 (97.96%), Postives = 194/196 (98.98%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSPPPPP--CVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60
           MECSDAKSGPTSIILRSQSPPPPP  CVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS
Sbjct: 1   MECSDAKSGPTSIILRSQSPPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60

Query: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120
           DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK
Sbjct: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180
           QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFS+ATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSSATPQ 180

Query: 181 SYPLFDDTNIWEALWT 194
           SYPLFDD+NIWEALWT
Sbjct: 181 SYPLFDDSNIWEALWT 196

BLAST of Csor.00g193280 vs. NCBI nr
Match: XP_022998902.1 (LOB domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 384 bits (986), Expect = 2.15e-134
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSPPP--PPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60
           MECSDAKSGPTS ILRSQSPPP  PPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS
Sbjct: 1   MECSDAKSGPTSTILRSQSPPPTPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60

Query: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120
           DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK
Sbjct: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180
           QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPP DHCSLDNNFSTATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPP-DHCSLDNNFSTATPQ 180

Query: 181 SYPLFDDTNIWEALWT 194
           SYPLFDD+NIWEALWT
Sbjct: 181 SYPLFDDSNIWEALWT 195

BLAST of Csor.00g193280 vs. ExPASy TrEMBL
Match: A0A6J1GBV4 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452554 PE=3 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 3.35e-138
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQS--PPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60
           MECSDAKSGPTSIILRSQS  PPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS
Sbjct: 1   MECSDAKSGPTSIILRSQSSPPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60

Query: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120
           DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK
Sbjct: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180
           QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180

Query: 181 SYPLFDDTNIWEALWT 194
           SYPLFDD+NIWEALWT
Sbjct: 181 SYPLFDDSNIWEALWT 196

BLAST of Csor.00g193280 vs. ExPASy TrEMBL
Match: A0A6J1K9A0 (LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493422 PE=3 SV=1)

HSP 1 Score: 384 bits (986), Expect = 1.04e-134
Identity = 191/196 (97.45%), Postives = 192/196 (97.96%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSPPP--PPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60
           MECSDAKSGPTS ILRSQSPPP  PPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS
Sbjct: 1   MECSDAKSGPTSTILRSQSPPPTPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPS 60

Query: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120
           DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK
Sbjct: 61  DPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQK 120

Query: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQ 180
           QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPP DHCSLDNNFSTATPQ
Sbjct: 121 QINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPP-DHCSLDNNFSTATPQ 180

Query: 181 SYPLFDDTNIWEALWT 194
           SYPLFDD+NIWEALWT
Sbjct: 181 SYPLFDDSNIWEALWT 195

BLAST of Csor.00g193280 vs. ExPASy TrEMBL
Match: A0A6J1DVT7 (LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111024535 PE=3 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.15e-112
Identity = 168/202 (83.17%), Postives = 176/202 (87.13%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILRSQSP----PPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFP 60
           MECS+AKS  TS ILRSQSP    PPPP + AGVVV+PCAACKILRRRCAEKCVLAPYFP
Sbjct: 1   MECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFP 60

Query: 61  PSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHL 120
           PSDP KFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAIC L
Sbjct: 61  PSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQL 120

Query: 121 QKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTAT 180
           QKQINELQAE+AKT AELVNM CHQA+LVALICKEL QTP P PPP DH SLDNNF+ AT
Sbjct: 121 QKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPPP-DHRSLDNNFNIAT 180

Query: 181 PQSY----PLFDDTNIWEALWT 194
           PQSY    P  +D+NIWE LWT
Sbjct: 181 PQSYQNYTPFLEDSNIWEPLWT 201

BLAST of Csor.00g193280 vs. ExPASy TrEMBL
Match: A0A6J1I3T6 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469412 PE=3 SV=1)

HSP 1 Score: 304 bits (779), Expect = 3.82e-103
Identity = 157/196 (80.10%), Postives = 167/196 (85.20%), Query Frame = 0

Query: 5   DAKSGPTSIILRSQSP-----PPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSD 64
           DAKS PTS I RSQSP     PPPP VQAG+VV+PCAACK LRRRC EKCVLAPYFPPSD
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPSD 61

Query: 65  PLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQ 124
           PLKFTIAHR+FGASNIIKLLQDLPESQR DAVSSLVYEASARIRDPVYGCAGAI  LQKQ
Sbjct: 62  PLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQ 121

Query: 125 INELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQS 184
           INELQAE+AKT AELVN+  HQ NLVALICKEL QTP P  PP DH +LDNN +TA PQS
Sbjct: 122 INELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSPP-DHHALDNNLNTAIPQS 181

Query: 185 YP-LFDDTNIWEALWT 194
           Y  LF+D++IWE LWT
Sbjct: 182 YTNLFEDSSIWEPLWT 196

BLAST of Csor.00g193280 vs. ExPASy TrEMBL
Match: A0A1S3CK12 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 2.05e-102
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 0

Query: 1   MECSDAKSGPTSIILR---SQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPP 60
           ME  + KS PTS +L    S SP PPP VQA VVV+PCAACKILRRRCAEKCVLAPYFPP
Sbjct: 1   MESREVKSSPTSTLLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPP 60

Query: 61  SDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQ 120
           SDPLKFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEASARIRDPVYGCAGAIC LQ
Sbjct: 61  SDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQ 120

Query: 121 KQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPP---PDHCSLDNNFST 180
           KQINELQAE+AKT AELVN+ CHQ NLVALICKEL QTP P       PDH SLDNNF+ 
Sbjct: 121 KQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNI 180

Query: 181 ATPQSYP----LFDDTNIWEALWT 194
           ATPQSY     LF+D+NIW+ LWT
Sbjct: 181 ATPQSYQGYTSLFEDSNIWDPLWT 204

BLAST of Csor.00g193280 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-53
Identity = 111/191 (58.12%), Postives = 132/191 (69.11%), Query Frame = 0

Query: 4   SDAKSGPTSIILRSQSPPPPPCVQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKF 63
           SDA    T II  S S  PPP +   VV++PCAACKILRRRCAE+CVLAPYFPP+DP KF
Sbjct: 5   SDASVATTPII--SSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKF 64

Query: 64  TIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINEL 123
           TIAHRVFGASNIIK LQ+LPESQR DAV+S+VYEA ARIRDPVYGCAGAI HLQ+Q++EL
Sbjct: 65  TIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSEL 124

Query: 124 QAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLF 183
           QA++AK   E+VNMQ  ++NL+ LI     Q         D+ S ++N            
Sbjct: 125 QAQLAKAQVEMVNMQFQRSNLLELIYNMDQQ----QKQEQDNMSFESNDLGFLEDKSNTN 184

Query: 184 DDTNIWEALWT 195
                W+ LWT
Sbjct: 185 SSMLWWDPLWT 189

BLAST of Csor.00g193280 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 98/136 (72.06%), Postives = 116/136 (85.29%), Query Frame = 0

Query: 17  SQSPPPPPC----VQAGVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGA 76
           + SPPPPP      Q  VV++PCAACKILRRRCA+KCVLAPYFPP+DP KFTIAHRVFGA
Sbjct: 34  TSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGA 93

Query: 77  SNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHA 136
           SNIIK LQ+LPESQR DAV+S+VYEA AR+RDPVYGCAGAI HLQ+Q++ELQA++AKT  
Sbjct: 94  SNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQV 153

Query: 137 ELVNMQCHQANLVALI 149
           ELV MQ  +++L+ LI
Sbjct: 154 ELVGMQLQRSSLLELI 169

BLAST of Csor.00g193280 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-37
Identity = 67/106 (63.21%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 33  TPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVS 92
           +PCA+CK+LRRRCA+ C+ APYFPP DP KF I H+VFGASN+ K+LQ+LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 93  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQ 139
           SLV+EA+AR+RDPVYGC GAI +LQ Q+++LQ ++A   AE++ +Q
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

BLAST of Csor.00g193280 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-36
Identity = 69/110 (62.73%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 33  TPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVS 92
           +PCAACK+LRRRCA+ CV +PYFP  +P KF   HRVFGASN+ K+LQ+LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 93  SLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQA 143
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA++A   AE+V+++  Q+
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 121

BLAST of Csor.00g193280 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-34
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 32  VTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAV 91
           +TPCAACK+LRRRCA++C  +PYF P +P KF   H+VFGASN+ K+L ++PESQRADA 
Sbjct: 43  ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query: 92  SSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKE 151
           +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAE+    +E++  +  +A +  LI   
Sbjct: 103 NSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREA-VATLIVPS 162

Query: 152 LTQTP--------APTPPPPDHCSLDNNFSTATPQS 180
            +Q          +   PPP   +     +TA P S
Sbjct: 163 NSQVAGFHNSGGVSVIAPPPQRPTTPPQPTTAHPPS 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LQR01.1e-5158.12LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
Q9SK081.5e-5072.06LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
Q8LBW33.7e-3663.21LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q9SHE92.4e-3562.73LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q8L5T52.9e-3347.44LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
Match NameE-valueIdentityDescription
KAG6607178.11.65e-140100.00LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7036865.11.15e-13899.49LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022949099.16.92e-13898.47LOB domain-containing protein 1-like [Cucurbita moschata][more]
XP_023523637.12.82e-13797.96LOB domain-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022998902.12.15e-13497.45LOB domain-containing protein 1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1GBV43.35e-13898.47LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114525... [more]
A0A6J1K9A01.04e-13497.45LOB domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493422... [more]
A0A6J1DVT71.15e-11283.17LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A6J1I3T63.82e-10380.10LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A1S3CK122.05e-10277.45LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=... [more]
Match NameE-valueIdentityDescription
AT1G07900.17.6e-5358.12LOB domain-containing protein 1 [more]
AT2G28500.11.1e-5172.06LOB domain-containing protein 11 [more]
AT2G30130.12.6e-3763.21Lateral organ boundaries (LOB) domain family protein [more]
AT1G31320.11.7e-3662.73LOB domain-containing protein 4 [more]
AT2G40470.12.1e-3447.44LOB domain-containing protein 15 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR31301:SF137LOB DOMAIN-CONTAINING PROTEIN 1coord: 20..193
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 20..193
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 34..131
e-value: 7.4E-41
score: 138.7
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 33..134
score: 26.454773

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g193280.m01Csor.00g193280.m01mRNA