Csor.00g188100 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g188100
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RNF181-like
Location	Csor_Chr07: 7682186 .. 7682878 (-)
RNA-Seq Expression	Csor.00g188100
Synteny	Csor.00g188100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTTCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGAGTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA

mRNA sequence

ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTTCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGAGTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA

Coding sequence (CDS)

ATGTCTTTCGTTACCTCTAGACCGATCCAGTATCGTATTTACGGCTACACATCCGCCGCTTCCGGCGAGCAACCCTATCAAGTTCTGCAACTCCAACTGCGCTATTTCCGCCGTGAGATCTCTGTTTCTCCGCTCTCCGGAGTTACGTACCTTCAAGAAACTGCACCGATTCTACTGAGGAATCTTCTGTTCCCGCTCCGCCTGCAGGAACTCCATGATCCGGTGTTCCTCCAGGTCTACGTCGCACAGTTGCTGTCCTTACTCAACGTTCGCTCCCCCGTACGCGAAGTCATTGCTGAGCGCATCGTGTCGTACACCCTCCTAGTGGCCGGCGGAAACAGAGAGACGAGTTTCCACACGGTCTTGGAGCTCGATTACATCCGAGTGATCACCTGGATGGAAGAAAACCACGGATTGTTCCAGGGATGGAGCAATGACAATGCAGCGGGGGAGGAGACGGCGATTCTGGAAGAAGCTCGGCCGGTTACGGAGAAAGTGGAAGAGAATGGGGAAGAGATGGGGGATTGCAGTATCTGTTTGGAAGAACTGAATGGGAACGGAAATGGGAATGGCGAAGGGAAGAAGAGGGAGGAGGTGATAAGGATGCAATGCGGGCATGTGTATCATGAGTCATGCATCTTCAACTGGCTACACCATAACAGTTCATGCCCCTTGTGCAGAGCCCCATTGTGA

Protein sequence

MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL

Homology

[Close]

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot
Match: Q08109 (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 25/102 (24.51%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 129 VITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGN 188
           ++   +    L++ W N+    +    +       E+++ +  +   C IC++EL  + N
Sbjct: 307 ILALYQSGTSLWKIWRNNKQLDDTLVTV-----TVEQLQNSANDDNICIICMDELIHSPN 366

Query: 189 GNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 231
                 K ++  R+ CGH+ H SC+ NW+  + +CP+CR P+
Sbjct: 367 QQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICRLPV 403

[Close]

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 175 DCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCPLCRAPL 231
           DC +CL +L          K  EEV ++ C HV+H+ C+  WL H N +CPLCR+PL
Sbjct: 73  DCIVCLSKL----------KTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPL 119

[Close]

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 141 QGWSNDNAAGEET-AILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEV 200
           QG +    A E+  A ++  +P  E ++E GE    C+IC+E            K  ++V
Sbjct: 364 QGHNAPAPAPEDVIAKMKVQKPPKELIDEEGE----CTICMEMF----------KINDDV 423

Query: 201 IRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 231
           I++ C H +HE+CI  WL  N +C +CRAP+
Sbjct: 424 IQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440

[Close]

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.3e-07
Identity = 27/87 (31.03%), Postives = 43/87 (49.43%), Query Frame = 0


Query: 144 SNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQ 203
           S+ + +  +  +LE+       V+ +   + +CS+CL E   +  G          +  +
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR---------VLPK 140

Query: 204 CGHVYHESCIFNWLHHNSSCPLCRAPL 231
           CGHV+H  CI  W    SSCPLCRAP+
Sbjct: 141 CGHVFHVDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 168 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCPLC 227
           + G    DC +CL +L          K+ EEV +++C HV+H+ C+  WLH  N +CPLC
Sbjct: 78  DGGGGGSDCVVCLSKL----------KEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLC 131

Query: 228 RAPL 231
           R+ L
Sbjct: 138 RSAL 131

[Close]

BLAST of Csor.00g188100 vs. NCBI nr
Match: KAG6595648.1 (hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459 bits (1181), Expect = 6.07e-163
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR
Sbjct: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60

Query: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120
           NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT
Sbjct: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120

Query: 121 VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180
           VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL
Sbjct: 121 VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180

Query: 181 EELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230
           EELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL
Sbjct: 181 EELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230

[Close]

BLAST of Csor.00g188100 vs. NCBI nr
Match: KAG6595650.1 (hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456 bits (1172), Expect = 1.43e-161
Identity = 228/230 (99.13%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR
Sbjct: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60

Query: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120
           NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT
Sbjct: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120

Query: 121 VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180
           VLELDYIR+ITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL
Sbjct: 121 VLELDYIRLITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180

Query: 181 EELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230
           EELNGNGNG GEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL
Sbjct: 181 EELNGNGNGKGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230

[Close]

BLAST of Csor.00g188100 vs. NCBI nr
Match: XP_023518048.1 (uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418 bits (1075), Expect = 8.15e-147
Identity = 209/230 (90.87%), Postives = 218/230 (94.78%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSF+TSRPIQYRIYGYTSAASGEQPYQVLQLQL Y RR+ISVSPLSGVTYLQETAPILLR
Sbjct: 1   MSFITSRPIQYRIYGYTSAASGEQPYQVLQLQLHYIRRDISVSPLSGVTYLQETAPILLR 60

Query: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120
           NLLFPL LQELHDPV LQVYVAQLLSLLNVRSP  E IAERIVSYT+L+AGGNRETSFHT
Sbjct: 61  NLLFPLPLQELHDPVILQVYVAQLLSLLNVRSPACEAIAERIVSYTILMAGGNRETSFHT 120

Query: 121 VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180
           V++LD+IR+ITWMEENHGLFQGWSN +A GEET ILEEARPVTEKVEENGEEMGDCSICL
Sbjct: 121 VVDLDFIRLITWMEENHGLFQGWSNGSAEGEETVILEEARPVTEKVEENGEEMGDCSICL 180

Query: 181 EELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230
           EELNGNGNG  EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL
Sbjct: 181 EELNGNGNG--EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 228

[Close]

BLAST of Csor.00g188100 vs. NCBI nr
Match: XP_023518045.1 (E3 ubiquitin-protein ligase RHA2A-like [Cucurbita pepo subsp. pepo] >XP_023518046.1 E3 ubiquitin-protein ligase RHA2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302 bits (774), Expect = 7.35e-102
Identity = 165/232 (71.12%), Postives = 166/232 (71.55%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60
           MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR
Sbjct: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTYLQETAPILLR 60

Query: 61  NLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSFHT 120
           NLLFPLRLQELH+PVFLQ                                          
Sbjct: 61  NLLFPLRLQELHNPVFLQ------------------------------------------ 120

Query: 121 VLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICL 180
                                GWSNDNA GEETAILEEARPVTEKVEENGEEMGDCSICL
Sbjct: 121 ---------------------GWSNDNALGEETAILEEARPVTEKVEENGEEMGDCSICL 169

Query: 181 EELNGNGNGNG--EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230
           EELNGNGNGNG  EGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL
Sbjct: 181 EELNGNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 169

[Close]

BLAST of Csor.00g188100 vs. NCBI nr
Match: KAG6603237.1 (E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 1.90e-50
Identity = 105/240 (43.75%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVT--YLQETAPIL 60
           MSF  S PIQYR+Y   +AA+  + ++ L++++R F R IS S  +GV    L ET P  
Sbjct: 1   MSFAASTPIQYRLY---TAAAQSETHKALEVRMRSFNRLISASSFTGVPPQILFETRPTP 60

Query: 61  LRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
           + + LF L L++LHDP+F   ++ +LLS L++ +   EVI  +I S    ++ GNRETSF
Sbjct: 61  VNDALFHLSLRQLHDPLF---HIPRLLSTLDIHAAACEVIGWKIASQITQLSAGNRETSF 120

Query: 121 HTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEA-------RPVTEKVE-ENG 180
           H V+E+D+I+ I WM +  G+ QG  N     EET +L+E        R V  +VE E  
Sbjct: 121 HIVVEVDFIQNI-WMGQVAGMHQGQGNGGGLVEETLVLDELPARRRQRRGVVARVEVEEE 180

Query: 181 EEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 230
           +E+GDC ICL+E+           K+ EVIR  CGHVYHESCIF WL+ ++SCPLC+ PL
Sbjct: 181 KELGDCCICLDEMM---------NKKREVIRTPCGHVYHESCIFQWLNLHNSCPLCKRPL 224

[Close]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.84e-47
Identity = 103/243 (42.39%), Postives = 142/243 (58.44%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEK-----------VE 180
           H + E+D+IR+I W+    G         A  EET +L+EA P  ++            E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCR 230
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIF WL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.84e-47
Identity = 103/243 (42.39%), Postives = 142/243 (58.44%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+Y     ASG     VLQ+ + + ++ ISVSPL+G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLY-----ASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N LF L L++L  P+F   Y+ Q+LS LN+R    + +A RI S+ L +   N ET+F
Sbjct: 61  YHNALFYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNF 120

Query: 121 HTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTEK-----------VE 180
           H + E+D+IR+I W+    G         A  EET +L+EA P  ++            E
Sbjct: 121 HILAEVDFIRLI-WLPSMGG-------GGAGAEETVVLDEAPPAVKRGVGVARGERLRSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCR 230
           E  EE+GDCSICL+EL+          ++ EV+R+ CGHVYHESCIF WL +++SCPLCR
Sbjct: 181 EKMEELGDCSICLDELS---------CEKREVMRIPCGHVYHESCIFKWLENHNSCPLCR 218

[Close]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 6.63e-45
Identity = 96/243 (39.51%), Postives = 141/243 (58.02%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+YG  +  +G     +L++++ +F + IS+SP++G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNG-----ILEVRISFFEQMISLSPVTGRPHQILHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N L  L L++L  P+F   Y+ Q LS LN+R    + +A +I S+ L +   N + +F
Sbjct: 61  YHNALVYLTLRQLQSPLF---YITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNF 120

Query: 121 HTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+D+IRVI W+E          +  A  EET + +EA P  +           K E
Sbjct: 121 HIIAEVDFIRVI-WLELEE------QSMGAGAEETVVFDEAPPALKRGVGKARGERLKSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCR 230
           E  E++GDCSICL+EL+          ++ EVIR+ CGHVYHESCIF WL +++SCPLCR
Sbjct: 181 EKVEDLGDCSICLDELS---------CEKREVIRIPCGHVYHESCIFKWLKNHNSCPLCR 219

[Close]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 6.63e-45
Identity = 96/243 (39.51%), Postives = 141/243 (58.02%), Query Frame = 0


Query: 1   MSFVTSRPIQYRIYGYTSAASGEQPYQVLQLQLRYFRREISVSPLSGVTY--LQETAPIL 60
           MSF  S PIQYR+YG  +  +G     +L++++ +F + IS+SP++G  +  L +T  I 
Sbjct: 1   MSFAISNPIQYRLYGSGTGGNG-----ILEVRISFFEQMISLSPVTGRPHQILHQTPRIP 60

Query: 61  LRNLLFPLRLQELHDPVFLQVYVAQLLSLLNVRSPVREVIAERIVSYTLLVAGGNRETSF 120
             N L  L L++L  P+F   Y+ Q LS LN+R    + +A +I S+ L +   N + +F
Sbjct: 61  YHNALVYLTLRQLQSPLF---YITQFLSSLNIRPAASQSMARQIASHILQMPDRNGDRNF 120

Query: 121 HTVLELDYIRVITWMEENHGLFQGWSNDNAAGEETAILEEARPVTE-----------KVE 180
           H + E+D+IRVI W+E          +  A  EET + +EA P  +           K E
Sbjct: 121 HIIAEVDFIRVI-WLELEE------QSMGAGAEETVVFDEAPPALKRGVGKARGERLKSE 180

Query: 181 ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCR 230
           E  E++GDCSICL+EL+          ++ EVIR+ CGHVYHESCIF WL +++SCPLCR
Sbjct: 181 EKVEDLGDCSICLDELS---------CEKREVIRIPCGHVYHESCIFKWLKNHNSCPLCR 219

[Close]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL
Match: A0A6J1EKL4 (E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111435522 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 8.45e-42
Identity = 92/208 (44.23%), Postives = 125/208 (60.10%), Query Frame = 0


Query: 33  LRYFRREISVSPLSGVT--YLQETAPILLRNLLFPLRLQELHDPVFLQVYVAQLLSLLNV 92
           +R F R IS S   GV    L ET P  + + LF L L++LHDP+F   ++ +LLS L++
Sbjct: 1   MRSFNRLISASSFPGVPPQILFETRPTPVNDALFHLSLRQLHDPLF---HIPRLLSTLDI 60

Query: 93  RSPVREVIAERIVSYTLLVAGGNRETSFHTVLELDYIRVITWMEENHGLFQGWSNDNAAG 152
            +   EVI  +I S    ++ GNRETSFH V+E+D+I+ I WM +  G+ QG  N     
Sbjct: 61  HAAACEVIGWKIASQIAQLSAGNRETSFHIVVEVDFIQNI-WMGQVAGMRQGQGNGGGLV 120

Query: 153 EETAILEEA-------RPVTEKVE-ENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRM 212
           EET +L+E        R V  +VE E  +E+GDC ICL+E+           K+ EVIR 
Sbjct: 121 EETVVLDELPARRRQRRGVVARVEVEEEKELGDCCICLDEMM---------NKKREVIRT 180

Query: 213 QCGHVYHESCIFNWLHHNSSCPLCRAPL 230
            CGHVYHESCIF WL+ ++SCPLC+ PL
Sbjct: 181 PCGHVYHESCIFQWLNLHNSCPLCKRPL 195

[Close]

BLAST of Csor.00g188100 vs. TAIR 10
Match: AT4G12190.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-09
Identity = 27/68 (39.71%), Postives = 36/68 (52.94%), Query Frame = 0


Query: 163 TEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSS 222
           TE+++    E   CSICLE L         G K  ++ RM C HV+H  C+  WL   ++
Sbjct: 9   TEELKSLKMETEPCSICLESL-------VSGPKPRDITRMTCSHVFHNGCLLEWLKRKNT 68

Query: 223 CPLCRAPL 231
           CPLCR  L
Sbjct: 69  CPLCRTEL 69

[Close]

BLAST of Csor.00g188100 vs. TAIR 10
Match: AT4G05350.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-08
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 0


Query: 172 EMGDCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLCRAPL 231
           E   CSICLE L         G K  +V RM C HV+H  C+  WL   ++CPLCR  +
Sbjct: 153 ETEPCSICLESL-------VSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]

BLAST of Csor.00g188100 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 175 DCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHH-NSSCPLCRAPL 231
           DC +CL +L          K  EEV ++ C HV+H+ C+  WL H N +CPLCR+PL
Sbjct: 73  DCIVCLSKL----------KTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPL 119

[Close]

BLAST of Csor.00g188100 vs. TAIR 10
Match: AT3G30460.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 120 TVLELDYIRVITWME--ENHGLFQGWSNDN----AAGEETAILE-----EARPVTEKVEE 179
           T+++ +Y+R + +++   NHG+    S D       G  ++        E  PV E   E
Sbjct: 28  TLIDDEYLRYLHYLDSRSNHGVNTFGSYDEIFGLVLGNSSSCTRWLNAGEELPVVEFTAE 87

Query: 180 NGEEMG--DCSICLEELNGNGNGNGEGKKREEVIRMQCGHVYHESCIFNWLHHNSSCPLC 228
              E G   C+IC EEL  N          E +  + C H YH+ CI NWL + ++CPLC
Sbjct: 88  EMMERGLVVCAICREELAAN----------ERLSELPCRHYYHKECISNWLSNRNTCPLC 138

[Close]

BLAST of Csor.00g188100 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 55.8 bits (133), Expect = 5.2e-08
Identity = 27/87 (31.03%), Postives = 43/87 (49.43%), Query Frame = 0


Query: 144 SNDNAAGEETAILEEARPVTEKVEENGEEMGDCSICLEELNGNGNGNGEGKKREEVIRMQ 203
           S+ + +  +  +LE+       V+ +   + +CS+CL E   +  G          +  +
Sbjct: 81  SSSSLSPLDPTVLEKIPIFVYSVKTHESPLEECSVCLSEFEEDDEGR---------VLPK 140

Query: 204 CGHVYHESCIFNWLHHNSSCPLCRAPL 231
           CGHV+H  CI  W    SSCPLCRAP+
Sbjct: 141 CGHVFHVDCIDTWFRSRSSCPLCRAPV 158

The following BLAST results are available for this feature:

BLAST of Csor.00g188100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08109	1.5e-07	24.51	ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (st...	[more]
Q9ZU51	2.5e-07	43.86	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9C1X4	3.3e-07	34.07	Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (stra...	[more]
Q9LZJ6	7.3e-07	31.03	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9ZT50	1.6e-06	39.06	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]

BLAST of Csor.00g188100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595648.1	6.07e-163	100.00	hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595650.1	1.43e-161	99.13	hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023518048.1	8.15e-147	90.87	uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo]	[more]
XP_023518045.1	7.35e-102	71.12	E3 ubiquitin-protein ligase RHA2A-like [Cucurbita pepo subsp. pepo] >XP_02351804...	[more]
KAG6603237.1	1.90e-50	43.75	E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma ...	[more]

BLAST of Csor.00g188100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K696	1.84e-47	42.39	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 P...	[more]
A0A0A0K2W2	1.84e-47	42.39	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 P...	[more]
A0A5D3E1S5	6.63e-45	39.51	E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUZ4	6.63e-45	39.51	E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 ...	[more]
A0A6J1EKL4	8.45e-42	44.23	E3 ubiquitin-protein ligase arkadia-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Csor.00g188100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12190.1	4.7e-09	39.71	RING/U-box superfamily protein	[more]
AT4G05350.1	1.4e-08	42.37	RING/U-box superfamily protein	[more]
AT2G01150.1	1.8e-08	43.86	RING-H2 finger protein 2B	[more]
AT3G30460.1	1.8e-08	31.40	RING/U-box superfamily protein	[more]
AT3G62690.1	5.2e-08	31.03	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 176..226 e-value: 3.9E-9 score: 46.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 176..227 score: 12.769585
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 175..227 e-value: 3.6E-11 score: 43.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 141..230 e-value: 1.5E-18 score: 68.3
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 28..228
None	No IPR available	PANTHER	PTHR22765:SF329	SUBFAMILY NOT NAMED	coord: 28..228
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 175..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g188100.m01	Csor.00g188100.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding