Csor.00g187810 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g187810
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr07: 7878001 .. 7881271 (+)
RNA-Seq Expression	Csor.00g187810
Synteny	Csor.00g187810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGGTACTTTCTCTCTCTTATCTATCACTTTCTTTCCCTTTTGGACTTGGGAGGAGATTTCATTTTGCATTATGATTTCTATGTGCTAGTGATTGAGATATGCAACGAACCCTAAATAGTGCAGACCTCAAAAAGCTTTAGGAGGCATCTTGTCGATCATTGAATGTAACAGCCCCCAAGCCCAAGCCCGCCGCTAGTAGATATTGTCCTATTTGGGTTTTCCCTTTTGGGCTTCTCCTCAAGGTTTATAAAATGCGTCTGGTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCCCAACCGATGTGAGATCTCACAATCCACCCTCTTTTGAGGCCCAGCGTCCTCACTGGCACTCATTCCCTTCTCCAATCGATGTGGGACTATCCACCCCCCTTCGGGGCCCAGCGTCTTTGCTGGCACACCGCCTCGTGTCTACCCTCCTTCGGGACTCAACCTCCTCGCTTGCACATTGCCTGGCGTCGGCTCTGATACCATTTGTAACAGCCCAAACCCACCGCTAGTAGATATTGCCTTCTTTGGGTTTTTCCTTTTAGGCGGTTTTTAAAATGCATATGCTAGAGAGAGGTTTTCACACCTTTATAAAAAAAAAATGCTTCGTTTTCCTCTCCAACTGATATGGAATCTCACATTGAATCTCTTTGACAGACGATCTATTGCGAGTTGACTTCCATCAATTCACTTTGCTTTGCTTCCCTGAGTACAATCGCTCCATTGCAAAATCCCTCTCTTGGTTCGTTTCTCTCATTGGTGATCAACGTGATAACACTTCCATAGCTCAACTAATTAGTATGAAAAACAAAATTTTCATTTCAACATTGACATTCGTAGTTAGCATAATAAATTCATACTCTAGTTCTTGTTATCACGATTTTGCTATCCAAAACCTATTTCCTTCGTTCTATTAATGTTCTTGACAAACATATGCATTAGGTTTTTTGAATTACTATATTTCACTTGATTACTCTAACTGCGAGAGCTCTTGCTTCACATTAAATATTGGTCTTATAAACAAGTTTTGCATCACTTGAATATATATCGCAAGTAAGAATATATTTGCCGCTGAAGTTTTCTTTCCCCTGTTTGTAGATTCAGAATGGTTGATGAGATTTGGCGAGCCTATGAACCTAACATAATGTGCTCTTGAGCAAGCATAAAAAATACCTCACTGCCGTGTCAAAGTCAAGGTAAGAAAGGGGAATTGATGAAGGCATTATCATAAGCTCATCTATGTGATTTGAGTCGTTTTGATCTTTATTTGGAAATACTTATAAACCAACATAGGTATTCCGAAAAGTGCTTGGAATAGTTGTTGAAGGCGTTATAATAAGCTCATCTATGTGGTTGGCCGAATAGTTGTTGAAGGCGTTATAATAAGCTCATCTATGTGGTTGGCCGAATAGTTGTTGGAGCTAATGACAAAAGTGCTCGGAAGGAATGAACAAGTTCAAACTATGAGTATTCACAGAACCAAATCAAGTAAGTGAAGTAGGGTCAGATTGGATTAAGCCAGTAAAAGGGAGACATGCCATCTTAGAGATTTTACTATTGGATGACCTTAAGGTAATTAGATATGTATGCATTTTGTTCCGGTATATGATTATGTGGTTGTAGTTAATATTTGTTAAAGCATTTATGGGACCTCAGGCATGTATAAAATGTCACAATATTTATGAAATAAAGCTCGAGACAATTACTCATTAGTGGATGAGTTAATTGTACCACCATGATTATAGGCTAGTTGAGTTACATTTTAGTTCCCGATCAAAGGTTAAATGACTAGGATTTTAATTTTTTGGTCATAGACAAGTCGGAAAGTATTTTGACTTTTAGTCACAGGTCAGATGATTAGTGTTTTCAAGTCTAGATAGGGACATAGGCTCAATGAGTTGTTTTGAACAATTTTGGATTCATTGGTTTTACATTAGATTTTATCGCGTGTGTGTAAGCATATCTGAGGGTTACTTATTGAGTATTTTCAATACTCATTTTTTTTTTTTTTTTTTTTTGTTCGGGTAAAGGCTTACAAGGTGTGATGAGATCATTTGCTCGCGGTGCTCAGGAGTTTGTAACCTCATGTATAGTCTTGCTTTTGCATTATCTTTGAGTATTTGTGGGTTTTGATTCAAGTTTTCTTTATGAAACTATTTTAGAGTTGGTATTTATAAGATGTTTTAGCGGCGTGATTATTAGCCATTTCATAAGCAAATTTTGCCTATTATATTGAAAATAATATTGTTTATCAACTTTTAAATTTTCTTTTCTCGGGTTTTAAAATGACGATAACATGCATCTAGTGACGATCTATGTTGGTCTAGGTTTAGGAAAGTTGGATTGTTACACACTCAATTTCCTATCTCGATCTCATCTCTTGCTCCTCTAGCTTTGGTCTTTGATCATGCTATCGATAGTCCCATTGACAATCACCACAGCACGCTGTGTTCTCTTTCACATAGGCATAGTTCAATCTACACCCTTTTTGGATCTCATTTTTCTCTCTCTCACCCTCGATTCTGATTGATCCCTCACTCTCATTTTGCTTCACTGTCTCTACTTTCCCAGACATTGTCCAACGTTCGATTGCCACTGACATAGAAGTTTATACAGCGAATGAAATTTGGGGTTTGGGTCTTTAGGTTTGAACAACAACCTCATCAAGTTAAACTGTGAATTGGAATATTTTCGAATGCTATCCGGTAGGATCAAAGACACTTGTGGTGCGTTTTGTAGATAATGACGGACTAAATCACTCTTCAAATTCAATTTAATTGCAATCAAATTCACTTTATGTTCTTTTAGGTTGAAAGACAGTTTTGAAATTTGTAATTGGTGTGAATAACCTTTTCTAAATCAAATTTTCAAACCACATTTAATATCTCTATCAACTCTTCAAAAGGACATCAATAATGAAAACCGACCCATTTTTGTTTGAAGTCCAAATAACGTACATAATAATTCATACCTACAAATCTTGTATTAATCCTATATTTCAAACCCTCTCCAAACTCTTGAAACTCATATATTTAGGGGCACTTTCGGCGCCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGTCGAAAGTGCCCGGCGGCACGCAGCTGCAACGACCACAGCATGTGCCGCATGCCCTGTTGCATAG

mRNA sequence

ATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGACGATCTATTGCGAGTTGACTTCCATCAATTCACTTTGCTTTGCTTCCCTGAGTACAATCGCTCCATTGCAAAATCCCTCTCTTGGTTCGTTTCTCTCATTGGTGATCAACGTGATAACACTTCCATAGCTCAACTAATTAGGGCACTTTCGGCGCCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGTCGAAAGTGCCCGGCGGCACGCAGCTGCAACGACCACAGCATGTGCCGCATGCCCTGTTGCATAG

Coding sequence (CDS)

ATGACAGCAAAGCTAACGTCAAAGGTGGTGCCTTCTTACAGCTCGTTGGATTCAGCTTCTCTCAACTATTGCCTTATTCATATTGACGATCTATTGCGAGTTGACTTCCATCAATTCACTTTGCTTTGCTTCCCTGAGTACAATCGCTCCATTGCAAAATCCCTCTCTTGGTTCGTTTCTCTCATTGGTGATCAACGTGATAACACTTCCATAGCTCAACTAATTAGGGCACTTTCGGCGCCCGCCGTGGGTGGTCATGTCGGCGTAGCAAGGGCAGGCGTCGTAGTTGTCGAAAGTGCCCGGCGGCACGCAGCTGCAACGACCACAGCATGTGCCGCATGCCCTGTTGCATAG

Protein sequence

MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVSLIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA

Homology

[Close]

BLAST of Csor.00g187810 vs. NCBI nr
Match: KAG6595677.1 (hypothetical protein SDJN03_12230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223 bits (567), Expect = 5.00e-73
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVS 60
           MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVS
Sbjct: 1   MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVS 60

Query: 61  LIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA 117
           LIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA
Sbjct: 61  LIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA 117

[Close]

BLAST of Csor.00g187810 vs. NCBI nr
Match: KAG7027638.1 (hypothetical protein SDJN02_11653, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (248), Expect = 8.66e-25
Identity = 67/117 (57.26%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 1   MTAKLTSKVVPSYSSLDSASLNYCLIHIDDLLRVDFHQFTLLCFPEYNRSIAKSLSWFVS 60
           MTAKLTSKVVPSYSSLDSASLNYCLIHI                                
Sbjct: 21  MTAKLTSKVVPSYSSLDSASLNYCLIHIG------------------------------- 80

Query: 61  LIGDQRDNTSIAQLIRALSAPAVGGHVGVARAGVVVVESARRHAAATTTACAACPVA 117
                           ALSA AVGGHVGVARAGVVV ESARRHAAATTTACAACPVA
Sbjct: 81  ----------------ALSAAAVGGHVGVARAGVVVAESARRHAAATTTACAACPVA 90

The following BLAST results are available for this feature:

BLAST of Csor.00g187810 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g187810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595677.1	5.00e-73	100.00	hypothetical protein SDJN03_12230, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027638.1	8.66e-25	57.26	hypothetical protein SDJN02_11653, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g187810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g187810 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g187810.m01	Csor.00g187810.m01	mRNA