Csor.00g183030 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g183030
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionplastid-lipid-associated protein 6, chloroplastic
LocationCsor_Chr14: 15267974 .. 15268449 (-)
RNA-Seq ExpressionCsor.00g183030
SyntenyCsor.00g183030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAGTGTTGTTTCCATTTTGGGTTTACAAAAAACCAGAATAATTGATCTATCACAGCTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA

mRNA sequence

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAACTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA

Coding sequence (CDS)

ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAACTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA

Protein sequence

MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSWKSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDKRRTHSVCYR
Homology
BLAST of Csor.00g183030 vs. ExPASy Swiss-Prot
Match: Q9LW57 (Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP6 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-09
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 84  SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 126
           SQ+PP ++PR+PD  RP SN G+G FEVTYV+D  +ITRGD+
Sbjct: 234 SQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDR 275

BLAST of Csor.00g183030 vs. NCBI nr
Match: KAG6582397.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278 bits (710), Expect = 2.72e-94
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW
Sbjct: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60

Query: 61  KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI 120
           KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI
Sbjct: 61  KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI 120

Query: 121 TRGDKRRTHSVCYR 134
           TRGDKRRTHSVCYR
Sbjct: 121 TRGDKRRTHSVCYR 134

BLAST of Csor.00g183030 vs. NCBI nr
Match: KAG7028817.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140 bits (352), Expect = 3.15e-39
Identity = 87/165 (52.73%), Postives = 97/165 (58.79%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFS-GCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFS 60
           MAALASSVL  PLQI  SDS S G LSP RIH  AP+FK+KCS RRPL SGDG PRR+F 
Sbjct: 1   MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60

Query: 61  WKSASDN---------------------------VYCDPSSASPSVDEYIG--------- 120
            KSASD+                            YC     S S    I          
Sbjct: 61  LKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKAT 120

Query: 121 ---SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 125
              SQLPPLEVPR+PD LRPPSNTGSG FEVTY+++DT+ITRGD+
Sbjct: 121 GNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDR 165

BLAST of Csor.00g183030 vs. NCBI nr
Match: XP_038899987.1 (plastid-lipid-associated protein 6, chloroplastic [Benincasa hispida])

HSP 1 Score: 133 bits (335), Expect = 2.44e-35
Identity = 99/280 (35.36%), Postives = 110/280 (39.29%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQ PLQIRPSDS  G L PSRI+RIAPSF +KCS  RPLLSGDG PRRNFS 
Sbjct: 1   MAALASSVLQSPLQIRPSDSSFGSLFPSRIYRIAPSFNLKCSPHRPLLSGDGGPRRNFSL 60

Query: 61  KSASDNVYCDPSSASPSVD----------------------------------------- 120
           KSAS +VY DPSSASPS+D                                         
Sbjct: 61  KSASTSVYADPSSASPSLDDEYKANSELLASLKVKLLSVVSGLNRGLAANEDDLQKADEA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 AKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180

BLAST of Csor.00g183030 vs. NCBI nr
Match: XP_008438497.1 (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo])

HSP 1 Score: 117 bits (292), Expect = 6.01e-29
Identity = 94/279 (33.69%), Postives = 102/279 (36.56%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KCSRR+ L SGDG  RRN S 
Sbjct: 1   MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLSL 60

Query: 61  KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
           KS S +VY DPSS    VDEY                                       
Sbjct: 61  KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

BLAST of Csor.00g183030 vs. NCBI nr
Match: KAA0049234.1 (putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa] >TYK17324.1 putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.30e-27
Identity = 93/279 (33.33%), Postives = 101/279 (36.20%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KCSRR+ L SG G  RRN S 
Sbjct: 1   MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGVGGSRRNLSL 60

Query: 61  KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
           KS S +VY DPSS    VDEY                                       
Sbjct: 61  KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match: A0A1S3AX61 (probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483576 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 2.91e-29
Identity = 94/279 (33.69%), Postives = 102/279 (36.56%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KCSRR+ L SGDG  RRN S 
Sbjct: 1   MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLSL 60

Query: 61  KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
           KS S +VY DPSS    VDEY                                       
Sbjct: 61  KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match: A0A5D3D241 (Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001790 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 6.27e-28
Identity = 93/279 (33.33%), Postives = 101/279 (36.20%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASSVLQ PLQIR SDS  G L  SRIHRIAPSF +KCSRR+ L SG G  RRN S 
Sbjct: 1   MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGVGGSRRNLSL 60

Query: 61  KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
           KS S +VY DPSS    VDEY                                       
Sbjct: 61  KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180

BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match: A0A6J1D0Q0 (plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015945 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 6.66e-28
Identity = 90/280 (32.14%), Postives = 102/280 (36.43%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAAL SS+LQ P QI   DS  G  SPSRI R AP+  +K SRRRPLLS DG PRR+FS 
Sbjct: 3   MAALVSSLLQSPAQISHFDSSYGFFSPSRIRRTAPNIGLKSSRRRPLLSDDGRPRRSFSL 62

Query: 61  KSASDNVYCDPSSASPSVD----------------------------------------- 120
           KSASDNVY DP++ASPS+D                                         
Sbjct: 63  KSASDNVYSDPAAASPSIDGEDKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEA 122

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 123 AKEIEAVGGPVDLSVDLDRLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 182

BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match: A0A0A0L4C7 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134880 PE=3 SV=1)

HSP 1 Score: 109 bits (273), Expect = 1.93e-26
Identity = 93/280 (33.21%), Postives = 101/280 (36.07%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
           MAALASS+LQ  LQIR SDS  G L PS IHRIAPSF +KCSR   L S DG PRR  S 
Sbjct: 1   MAALASSLLQSSLQIRTSDSSFGSLFPSTIHRIAPSFNLKCSRLHSLFSLDGGPRRILSL 60

Query: 61  KSASDNVYCDPSSASPSV-DEY-------------------------------------- 120
           KS S NVY DP+SASPSV DEY                                      
Sbjct: 61  KSVSVNVYADPASASPSVVDEYQAKSELLASLKVKLLTAVSGLNRGLAADEDDLQKADEA 120

Query: 121 ------------------------------------------------------------ 125
                                                                       
Sbjct: 121 AKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180

BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match: A0A6J1IHR9 (plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473175 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.10e-23
Identity = 87/273 (31.87%), Postives = 102/273 (37.36%), Query Frame = 0

Query: 1   MAALASSVLQFPLQIRPSDSFS-GCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFS 60
           MAA+A+SVL  PLQI  SDS S G LSPSRIH  AP+FK+KCS RRPLLSGDG P+R+F 
Sbjct: 1   MAAVATSVLHSPLQICSSDSSSSGFLSPSRIHGFAPNFKLKCSSRRPLLSGDGRPKRSFY 60

Query: 61  WKSASDN----------------------------------------------------- 120
            KSASD+                                                     
Sbjct: 61  LKSASDSSPSLDDDYKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAA 120

Query: 121 -------------------VYCDPSSASP------------------------------- 125
                              +Y    S+                                 
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180

BLAST of Csor.00g183030 vs. TAIR 10
Match: AT3G23400.1 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-10
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 84  SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 126
           SQ+PP ++PR+PD  RP SN G+G FEVTYV+D  +ITRGD+
Sbjct: 234 SQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDR 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LW574.5e-0961.90Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
KAG6582397.12.72e-94100.00Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper... [more]
KAG7028817.13.15e-3952.73Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper... [more]
XP_038899987.12.44e-3535.36plastid-lipid-associated protein 6, chloroplastic [Benincasa hispida][more]
XP_008438497.16.01e-2933.69PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis m... [more]
KAA0049234.11.30e-2733.33putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa] >TYK17324... [more]
Match NameE-valueIdentityDescription
A0A1S3AX612.91e-2933.69probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=36... [more]
A0A5D3D2416.27e-2833.33Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1D0Q06.66e-2832.14plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673... [more]
A0A0A0L4C71.93e-2633.21PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G1348... [more]
A0A6J1IHR92.10e-2331.87plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN... [more]
Match NameE-valueIdentityDescription
AT3G23400.13.2e-1061.90Plastid-lipid associated protein PAP / fibrillin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006843Plastid lipid-associated protein/fibrillin conserved domainPFAMPF04755PAP_fibrillincoord: 83..125
e-value: 6.3E-6
score: 26.3
IPR039633Plastid-lipid-associated proteinPANTHERPTHR31906FAMILY NOT NAMEDcoord: 84..126
NoneNo IPR availablePANTHERPTHR31906:SF15PLASTID-LIPID-ASSOCIATED PROTEIN 6, CHLOROPLASTICcoord: 84..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g183030.m01Csor.00g183030.m01mRNA