Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAAGTTTGAAATCATGGGTTAGTGTTGTTTCCATTTTGGGTTTACAAAAAACCAGAATAATTGATCTATCACAGCTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA
mRNA sequence
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAACTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA
Coding sequence (CDS)
ATGGCTGCTCTAGCAAGCTCTGTTCTTCAGTTTCCACTTCAGATCCGTCCTTCCGATTCCTTTTCTGGGTGCCTTTCTCCATCCAGAATACATCGGATTGCACCCAGTTTCAAGATCAAGTGTTCCCGCCGGCGGCCTTTGCTTTCCGGCGACGGTGTACCCAGAAGAAATTTCTCTTGGAAATCTGCTTCAGACAATGTTTACTGCGACCCCTCGTCGGCCTCTCCGTCTGTTGATGAATACATTGGCTCACAACTTCCACCATTAGAGGTACCTCGGATTCCAGATGTGTTGAGGCCTCCATCTAACACCGGAAGTGGTGTCTTTGAAGTCACTTACGTTGAAGATGATACCCAGATCACCAGAGGAGATAAAAGGAGAACTCACTCTGTTTGTTATCGATAA
Protein sequence
MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSWKSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDKRRTHSVCYR
Homology
BLAST of Csor.00g183030 vs. ExPASy Swiss-Prot
Match:
Q9LW57 (Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP6 PE=1 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 4.5e-09
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
Query: 84 SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 126
SQ+PP ++PR+PD RP SN G+G FEVTYV+D +ITRGD+
Sbjct: 234 SQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDR 275
BLAST of Csor.00g183030 vs. NCBI nr
Match:
KAG6582397.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 278 bits (710), Expect = 2.72e-94
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW
Sbjct: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
Query: 61 KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI 120
KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI
Sbjct: 61 KSASDNVYCDPSSASPSVDEYIGSQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQI 120
Query: 121 TRGDKRRTHSVCYR 134
TRGDKRRTHSVCYR
Sbjct: 121 TRGDKRRTHSVCYR 134
BLAST of Csor.00g183030 vs. NCBI nr
Match:
KAG7028817.1 (Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 140 bits (352), Expect = 3.15e-39
Identity = 87/165 (52.73%), Postives = 97/165 (58.79%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFS-GCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFS 60
MAALASSVL PLQI SDS S G LSP RIH AP+FK+KCS RRPL SGDG PRR+F
Sbjct: 1 MAALASSVLHSPLQICSSDSSSSGFLSPPRIHGFAPNFKVKCSSRRPLRSGDGRPRRSFY 60
Query: 61 WKSASDN---------------------------VYCDPSSASPSVDEYIG--------- 120
KSASD+ YC S S I
Sbjct: 61 LKSASDSSPSLVDDYKANSELLASLKIKLLVEELFYCLLVLRSGSAKIKITFQKTTVKAT 120
Query: 121 ---SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 125
SQLPPLEVPR+PD LRPPSNTGSG FEVTY+++DT+ITRGD+
Sbjct: 121 GNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDR 165
BLAST of Csor.00g183030 vs. NCBI nr
Match:
XP_038899987.1 (plastid-lipid-associated protein 6, chloroplastic [Benincasa hispida])
HSP 1 Score: 133 bits (335), Expect = 2.44e-35
Identity = 99/280 (35.36%), Postives = 110/280 (39.29%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQ PLQIRPSDS G L PSRI+RIAPSF +KCS RPLLSGDG PRRNFS
Sbjct: 1 MAALASSVLQSPLQIRPSDSSFGSLFPSRIYRIAPSFNLKCSPHRPLLSGDGGPRRNFSL 60
Query: 61 KSASDNVYCDPSSASPSVD----------------------------------------- 120
KSAS +VY DPSSASPS+D
Sbjct: 61 KSASTSVYADPSSASPSLDDEYKANSELLASLKVKLLSVVSGLNRGLAANEDDLQKADEA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 AKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180
BLAST of Csor.00g183030 vs. NCBI nr
Match:
XP_008438497.1 (PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis melo])
HSP 1 Score: 117 bits (292), Expect = 6.01e-29
Identity = 94/279 (33.69%), Postives = 102/279 (36.56%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQ PLQIR SDS G L SRIHRIAPSF +KCSRR+ L SGDG RRN S
Sbjct: 1 MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLSL 60
Query: 61 KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
KS S +VY DPSS VDEY
Sbjct: 61 KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180
BLAST of Csor.00g183030 vs. NCBI nr
Match:
KAA0049234.1 (putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa] >TYK17324.1 putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 113 bits (283), Expect = 1.30e-27
Identity = 93/279 (33.33%), Postives = 101/279 (36.20%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQ PLQIR SDS G L SRIHRIAPSF +KCSRR+ L SG G RRN S
Sbjct: 1 MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGVGGSRRNLSL 60
Query: 61 KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
KS S +VY DPSS VDEY
Sbjct: 61 KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180
BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match:
A0A1S3AX61 (probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483576 PE=3 SV=1)
HSP 1 Score: 117 bits (292), Expect = 2.91e-29
Identity = 94/279 (33.69%), Postives = 102/279 (36.56%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQ PLQIR SDS G L SRIHRIAPSF +KCSRR+ L SGDG RRN S
Sbjct: 1 MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGDGGSRRNLSL 60
Query: 61 KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
KS S +VY DPSS VDEY
Sbjct: 61 KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180
BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match:
A0A5D3D241 (Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001790 PE=3 SV=1)
HSP 1 Score: 113 bits (283), Expect = 6.27e-28
Identity = 93/279 (33.33%), Postives = 101/279 (36.20%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASSVLQ PLQIR SDS G L SRIHRIAPSF +KCSRR+ L SG G RRN S
Sbjct: 1 MAALASSVLQSPLQIRTSDSSFGSLFSSRIHRIAPSFNLKCSRRQSLFSGVGGSRRNLSL 60
Query: 61 KSASDNVYCDPSSASPSVDEY--------------------------------------- 120
KS S +VY DPSS VDEY
Sbjct: 61 KSVSADVYSDPSSPPSVVDEYKAKSELLASLKIKLLSAVSGLNRGLAANEDDLQKADEAA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 KEIEAVGGPVDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRI 180
BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match:
A0A6J1D0Q0 (plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015945 PE=3 SV=1)
HSP 1 Score: 113 bits (283), Expect = 6.66e-28
Identity = 90/280 (32.14%), Postives = 102/280 (36.43%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAAL SS+LQ P QI DS G SPSRI R AP+ +K SRRRPLLS DG PRR+FS
Sbjct: 3 MAALVSSLLQSPAQISHFDSSYGFFSPSRIRRTAPNIGLKSSRRRPLLSDDGRPRRSFSL 62
Query: 61 KSASDNVYCDPSSASPSVD----------------------------------------- 120
KSASDNVY DP++ASPS+D
Sbjct: 63 KSASDNVYSDPAAASPSIDGEDKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEA 122
Query: 121 ------------------------------------------------------------ 125
Sbjct: 123 AKEIEAVGGPVDLSVDLDRLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 182
BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match:
A0A0A0L4C7 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134880 PE=3 SV=1)
HSP 1 Score: 109 bits (273), Expect = 1.93e-26
Identity = 93/280 (33.21%), Postives = 101/280 (36.07%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFSGCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFSW 60
MAALASS+LQ LQIR SDS G L PS IHRIAPSF +KCSR L S DG PRR S
Sbjct: 1 MAALASSLLQSSLQIRTSDSSFGSLFPSTIHRIAPSFNLKCSRLHSLFSLDGGPRRILSL 60
Query: 61 KSASDNVYCDPSSASPSV-DEY-------------------------------------- 120
KS S NVY DP+SASPSV DEY
Sbjct: 61 KSVSVNVYADPASASPSVVDEYQAKSELLASLKVKLLTAVSGLNRGLAADEDDLQKADEA 120
Query: 121 ------------------------------------------------------------ 125
Sbjct: 121 AKEIEAVGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQR 180
BLAST of Csor.00g183030 vs. ExPASy TrEMBL
Match:
A0A6J1IHR9 (plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473175 PE=3 SV=1)
HSP 1 Score: 101 bits (252), Expect = 2.10e-23
Identity = 87/273 (31.87%), Postives = 102/273 (37.36%), Query Frame = 0
Query: 1 MAALASSVLQFPLQIRPSDSFS-GCLSPSRIHRIAPSFKIKCSRRRPLLSGDGVPRRNFS 60
MAA+A+SVL PLQI SDS S G LSPSRIH AP+FK+KCS RRPLLSGDG P+R+F
Sbjct: 1 MAAVATSVLHSPLQICSSDSSSSGFLSPSRIHGFAPNFKLKCSSRRPLLSGDGRPKRSFY 60
Query: 61 WKSASDN----------------------------------------------------- 120
KSASD+
Sbjct: 61 LKSASDSSPSLDDDYKANSELLASLKLKLLSAVSGLNRGLAANEDDLQKADEAAKEIEAA 120
Query: 121 -------------------VYCDPSSASP------------------------------- 125
+Y S+
Sbjct: 121 GGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVISKD 180
BLAST of Csor.00g183030 vs. TAIR 10
Match:
AT3G23400.1 (Plastid-lipid associated protein PAP / fibrillin family protein )
HSP 1 Score: 62.4 bits (150), Expect = 3.2e-10
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
Query: 84 SQLPPLEVPRIPDVLRPPSNTGSGVFEVTYVEDDTQITRGDK 126
SQ+PP ++PR+PD RP SN G+G FEVTYV+D +ITRGD+
Sbjct: 234 SQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDDTMRITRGDR 275
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LW57 | 4.5e-09 | 61.90 | Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=370... | [more] |
Match Name | E-value | Identity | Description | |
KAG6582397.1 | 2.72e-94 | 100.00 | Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper... | [more] |
KAG7028817.1 | 3.15e-39 | 52.73 | Plastid-lipid-associated protein 6, chloroplastic, partial [Cucurbita argyrosper... | [more] |
XP_038899987.1 | 2.44e-35 | 35.36 | plastid-lipid-associated protein 6, chloroplastic [Benincasa hispida] | [more] |
XP_008438497.1 | 6.01e-29 | 33.69 | PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Cucumis m... | [more] |
KAA0049234.1 | 1.30e-27 | 33.33 | putative plastid-lipid-associated protein 6 [Cucumis melo var. makuwa] >TYK17324... | [more] |
Match Name | E-value | Identity | Description | |
A0A1S3AX61 | 2.91e-29 | 33.69 | probable plastid-lipid-associated protein 6, chloroplastic OS=Cucumis melo OX=36... | [more] |
A0A5D3D241 | 6.27e-28 | 33.33 | Putative plastid-lipid-associated protein 6 OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A6J1D0Q0 | 6.66e-28 | 32.14 | plastid-lipid-associated protein 6, chloroplastic OS=Momordica charantia OX=3673... | [more] |
A0A0A0L4C7 | 1.93e-26 | 33.21 | PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G1348... | [more] |
A0A6J1IHR9 | 2.10e-23 | 31.87 | plastid-lipid-associated protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN... | [more] |
Match Name | E-value | Identity | Description | |
AT3G23400.1 | 3.2e-10 | 61.90 | Plastid-lipid associated protein PAP / fibrillin family protein | [more] |