Csor.00g181840 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g181840
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description10 kDa chaperonin 1, chloroplastic-like
LocationCsor_Chr14: 15846312 .. 15847889 (-)
RNA-Seq ExpressionCsor.00g181840
SyntenyCsor.00g181840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCCTTTGAACTTTTTGTATAAATTCATTCCGACCTGATTTTTTTGTTCAATTCTTAGTTGCACTTTCGTTGGAATTTCTCTTCCCTCTTTAAAACGTTTCTCCCGCCCATCTCATTCGACTCCCTGCAACTTTGCTTCTTCGACTAGATTCATGGCGATGCCTCTACGTTCGTCACAGTGTCAAAGCCCTTTATCAACACGGCTAATTCACCTTCCGTATCTGCACCGCGACGAGTAATCGGTACGCTGATAAGTAAATCCGTTGATAGACTGTCGCATTTTCTTTTCTCGATCAATTTCTGTCGCGCTATCCGTCTTCTGAATTTTTGGATGTTTTTTTCTTCTTGATTTTTGGATAGGAGGACTGCGAAGAAGCACTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCAAAGGTAGTCCACCCCTGCGATTTGAGTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTCTTTTGTGTTATTGAACTCATGAACTTGGATTTTAATGCTTATTATTGGCCATTTTATGATGCTTTTGGATTTAAGGTGGTTCCTCAAGCTGATAGAGTATACTCGTTCGTCTTGAGTAGCGCCCTGAGGTAATCTCACTCTCAACAAAAATTGCGAATGAATTTCTAGAATTTGTTTGATGTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTAAGTCGTTTGGTTTGGTGGATTCATCATATTGGCTTGAATATTCTCTCAATTATTTATAGTCCAGCTTTGCTTTTCAATTATTGGGTATCATATCACAAATGTGCTGCAATCAAGAATGCGGATGGATGTTGCTTTTTAACCATTTCTTTGATTCTTAAAAGTGAAAAAAAAAAAAAAAAAAAAAAAATCGTTGACTCAGAAATCTGATCATAGGCTTAGTATGGATTATAAATTTGTTTGAATTGAGTTTGTCTATGCACCATTCCTCTTAGAATTGGATGTCGAAAAAGTTCTTGGCTCAAAAAATCTGGCCATAGGGTTGGTTGGTTTAAATTATGTCTTACATCAATCACTGTATGAGACTGTTACTAGAGATGCTTTTATAGGAAATATGAACGGTTTGGCGATGTATCCTTGGAAGTCTTAGCTTCTAAGTTGTATCTTGTGTGTTAGCTGACCCTCTTATTCATCTTCATCTTTCTGCTTTCCCTACACATTATTTTTCCTTCTGCTTCTCTCCATTTTGGATTTCGAAATGAAAGCAATGAATTAAATGAGCTATACAAGGGGACCAAGATGCAACCGTAGTAGCCTCTTAGTTCTACTCTAGTTATAACTTTCTTATATTTGTTGTTAACACGTGACAAACAAATTCGAATGAACTATACTCGAATGAGTGTAATTATTATTTTATCTATTGAGCTATACTCAAGTGATCGAACCAAACTTATAAATAAATGATTGATCCCCGATTATATTATATTTTTTAGATTGATTTTGAATGTTGGTGGTGATTTGTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAG

mRNA sequence

ATGCCGCCCTTTGAACTTTTTATTCATGGCGATGCCTCTACGTTCGTCACAGTGTCAAAGCCCTTTATCAACACGGCTAATTCACCTTCCGTATCTGCACCGCGACGAGTAATCGGAGGACTGCGAAGAAGCACTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCAAAGGTGGTTCCTCAAGCTGATAGAGTATACTCGTTCGTCTTGAGTAGCGCCCTGAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAG

Coding sequence (CDS)

ATGCCGCCCTTTGAACTTTTTATTCATGGCGATGCCTCTACGTTCGTCACAGTGTCAAAGCCCTTTATCAACACGGCTAATTCACCTTCCGTATCTGCACCGCGACGAGTAATCGGAGGACTGCGAAGAAGCACTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCAAAGGTGGTTCCTCAAGCTGATAGAGTATACTCGTTCGTCTTGAGTAGCGCCCTGAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAG

Protein sequence

MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC
Homology
[Close]
BLAST of Csor.00g181840 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-08
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 12 ASTFVTVSKPFIN---TANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 68
          AS+F+TV KPF++     N+P++  P++ + G+RR++F++ AVS K EPAKVVPQADRV
Sbjct: 2  ASSFITVPKPFLSFPIKTNAPTL--PQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRV 58

[Close]
BLAST of Csor.00g181840 vs. NCBI nr
Match: KAG6582514.1 (10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183 bits (465), Expect = 3.38e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKV 60
          MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKV
Sbjct: 1  MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKV 60

Query: 61 VPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC 94
          VPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC
Sbjct: 61 VPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC 94

[Close]
BLAST of Csor.00g181840 vs. NCBI nr
Match: XP_022924292.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 174 bits (440), Expect = 2.66e-54
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 1   MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKV 60
           MPPFELFIHGDASTFVTV KPFINTANSPSVSA RRVIGGLRRS FKVRAVSKKREPAKV
Sbjct: 7   MPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGGLRRSAFKVRAVSKKREPAKV 66

Query: 61  VPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC 94
           VPQADRVYSFVLSSAL WIWAQILSTVSAKLVIC
Sbjct: 67  VPQADRVYSFVLSSALSWIWAQILSTVSAKLVIC 100

[Close]
BLAST of Csor.00g181840 vs. NCBI nr
Match: XP_016898890.1 (PREDICTED: 10 kDa chaperonin isoform X2 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.61e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF+TV KPFIN  N SPSVSA R +IGGLR ST KV A+S+K EPAKVVPQADRV
Sbjct: 4  ASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. NCBI nr
Match: XP_038880425.1 (10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 2.14e-16
Identity = 43/56 (76.79%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTFVTV K  IN  NSPSVSA R +IGGLR ST KV A+SKK EPAKVVPQADRV
Sbjct: 4  ASTFVTVPKLSINRPNSPSVSARRLIIGGLRSSTLKVSAISKKLEPAKVVPQADRV 59

[Close]
BLAST of Csor.00g181840 vs. NCBI nr
Match: XP_008438275.1 (PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo] >KAA0049110.1 10 kDa chaperonin isoform X1 [Cucumis melo var. makuwa] >TYK17453.1 10 kDa chaperonin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 3.11e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF+TV KPFIN  N SPSVSA R +IGGLR ST KV A+S+K EPAKVVPQADRV
Sbjct: 4  ASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match: A0A6J1E8H4 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431822 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 1.29e-54
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 1   MPPFELFIHGDASTFVTVSKPFINTANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKV 60
           MPPFELFIHGDASTFVTV KPFINTANSPSVSA RRVIGGLRRS FKVRAVSKKREPAKV
Sbjct: 7   MPPFELFIHGDASTFVTVPKPFINTANSPSVSARRRVIGGLRRSAFKVRAVSKKREPAKV 66

Query: 61  VPQADRVYSFVLSSALRWIWAQILSTVSAKLVIC 94
           VPQADRVYSFVLSSAL WIWAQILSTVSAKLVIC
Sbjct: 67  VPQADRVYSFVLSSALSWIWAQILSTVSAKLVIC 100

[Close]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match: A0A1S4DT59 (10 kDa chaperonin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.81e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF+TV KPFIN  N SPSVSA R +IGGLR ST KV A+S+K EPAKVVPQADRV
Sbjct: 4  ASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match: A0A5D3CZW2 (10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003170 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.50e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF+TV KPFIN  N SPSVSA R +IGGLR ST KV A+S+K EPAKVVPQADRV
Sbjct: 4  ASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match: A0A1S3AWL8 (10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.50e-16
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF+TV KPFIN  N SPSVSA R +IGGLR ST KV A+S+K EPAKVVPQADRV
Sbjct: 4  ASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match: A0A0A0L6L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.70e-15
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 12 ASTFVTVSKPFINTAN-SPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 67
          ASTF TV KPFINT N SPSVS  R + GGLR S  KV A+SKK EPAKVVPQADRV
Sbjct: 4  ASTFFTVPKPFINTPNTSPSVSTRRLITGGLRSSNLKVSAISKKWEPAKVVPQADRV 60

[Close]
BLAST of Csor.00g181840 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 12 ASTFVTVSKPFIN---TANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 68
          AS+F+TV KPF++     N+P++  P++ + G+RR++F++ AVS K EPAKVVPQADRV
Sbjct: 2  ASSFITVPKPFLSFPIKTNAPTL--PQQTLLGIRRNSFRINAVSTKWEPAKVVPQADRV 58

[Close]
BLAST of Csor.00g181840 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 40.4 bits (93), Expect = 9.2e-04
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 12 ASTFV-TVSKPFIN-TANSPSVSAPRRVIGGLRRSTFKVRAVSKKREPAKVVPQADRV 68
          ASTFV ++  PF      + + S     + G RR   +++A+S K EP KVVPQADRV
Sbjct: 2  ASTFVCSLPNPFFAFPVKATTPSTANHTLLGSRRGCLRIKAISTKWEPTKVVPQADRV 59

The following BLAST results are available for this feature:
BLAST of Csor.00g181840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1C22.7e-0852.5410 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE... [more]
BLAST of Csor.00g181840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582514.13.38e-58100.0010 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_022924292.12.66e-5495.7410 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata][more]
XP_016898890.11.61e-1675.44PREDICTED: 10 kDa chaperonin isoform X2 [Cucumis melo][more]
XP_038880425.12.14e-1676.7910 kDa chaperonin 1, chloroplastic-like [Benincasa hispida][more]
XP_008438275.13.11e-1675.44PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo] >KAA0049110.1 10 kDa chap... [more]
BLAST of Csor.00g181840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8H41.29e-5495.7410 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A1S4DT597.81e-1775.4410 kDa chaperonin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1[more]
A0A5D3CZW21.50e-1675.4410 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3AWL81.50e-1675.4410 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1[more]
A0A0A0L6L91.70e-1573.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1[more]
BLAST of Csor.00g181840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60210.11.9e-0952.54GroES-like family protein [more]
AT2G44650.19.2e-0443.10chloroplast chaperonin 10 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g181840.m01Csor.00g181840.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051085 chaperone cofactor-dependent protein refolding
cellular_component GO:0005759 mitochondrial matrix
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051082 unfolded protein binding