Csor.00g179730 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGCTCCCTTCCTTCAAACTACCTGCCAGATACGACGCCGTTTCCGCACTTGGGTACAGGTTCCGGTTATCACATTTTCTCTATAAAAGAAAAATAAAAAGAAAAATAAAAATAAAAAGAAATAAGAAGGGCGTTTAGCAAGTTCGTTCTCTCCGTTGTTGTTGTTGTTGTTGGCTGGAACCACGTCGCCCCCTCGTATTGGGCCGTGTATTCATTATGGGCCCAGAATGAATGCAAGCCCACATCCCAAGCATCCATAAAATCCCAACCTTGAGGACTTCCTCAAACCCTAGGACGCTTCCGTATTTGCGCAGCGAAAAAACAGATCGTTCACAGCCTCCGCCATTGCCTGTTTCTTCTGGTCTCAAATCTCTCCCCCCTCGCTTTCCAACTGCTGTTATTCATTTGTTTTTCTGCAATGCATTCGATTCCTAATGCTTCCTCATCTGTGTTGTTTTTCTGCGTTCCTTCTTCCATAACTTTTCTCGCTTCTGATCCTGCAGTGAAAAATGTCGATCGGAGAAATTGCTTGCTCCTACGCTTCTCTCATCCTCTGCGATGATGGCATCCCTATTACCGTATGCTTCTCTTTACTCCTGCCTTCCCCCCTTCAATATTTCATTTATCTCTTAGCAATTACTTTCGTGTTTTCGTATACCGGTTTCGAGGTTATTAATGGGAGATTTCCATGTGTTGTTCTAATTGATTAGGATGATATTAGGATTATTAACATGTTGCGCGATTTCCATCATTGTAGAAAAATTATAAACTGTTATTCGGTTACTTTTCATCAATATTTTATAGAATCAGTGTTTACTATCTCTTATTCTTCTGCCGTTATTCCTTTTCTGGTCTGTTTATGAAATTTGTTCCAAGTTGTGATCATCGCCTCCTCTTATAAATATATGTGATAGCTTTTGTTTGCTACATCGTTTCAACAGGCAGAAAAACTTGCTACGCTTGTAAAGGCAGCTAAGGTTGACAAAGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGAAGATCTGATTCTCAATGTTGGTGCTGGTGGAGGCGCCGCAGTCGCTGCTGCTCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCCGCCGCTGCTCCTCCACCGGAAGAGAAAAAGGTAAGCATAGCCATTTCGCTCCTAAGAATGATGTATTCTTATTCTTCCTGTCATGAAAGCTTGTTTTTGGGGTATAATGTGTATATTATCGTGACATGGGGTTGGATTATTTTTCTTACTTGCAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG ATGGCGGCTCCCTTCCTTCAAACTACCTGCCAGATACGACGCCGTTTCCGCACTTGGGTACAGGACGCTTCCGTATTTGCGCAGCGAAAAAACAGATCGTTCACAGCCTCCGCCATTGCCTGTTTCTTCTGTGAAAAATGTCGATCGGAGAAATTGCTTGCTCCTACGCTTCTCTCATCCTCTGCGATGATGGCATCCCTATTACCGCAGAAAAACTTGCTACGCTTCCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGAAGATCTGATTCTCAATGTTGGTGCTGGTGGAGGCGCCGCAGTCGCTGCTGCTCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCCGCCGCTGCTCCTCCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG ATGGCGGCTCCCTTCCTTCAAACTACCTGCCAGATACGACGCCGTTTCCGCACTTGGGTACAGGACGCTTCCGTATTTGCGCAGCGAAAAAACAGATCGTTCACAGCCTCCGCCATTGCCTGTTTCTTCTGTGAAAAATGTCGATCGGAGAAATTGCTTGCTCCTACGCTTCTCTCATCCTCTGCGATGATGGCATCCCTATTACCGCAGAAAAACTTGCTACGCTTCCTTTTTGCTAAGCTGGCTGAGAAGCGTAACATTGAAGATCTGATTCTCAATGTTGGTGCTGGTGGAGGCGCCGCAGTCGCTGCTGCTCCAGCTGGCGGAGCTGCTGGTGGCGCTGCTGCCGCCGCTGCTCCTCCACCGGAAGAGAAAAAGGAAGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG MAAPFLQTTCQIRRRFRTWVQDASVFAQRKNRSFTASAIACFFCEKCRSEKLLAPTLLSSSAMMASLLPQKNLLRFLFAKLAEKRNIEDLILNVGAGGGAAVAAAPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD Homology
BLAST of Csor.00g179730 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 4.1e-16 Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12 Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2) HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy Swiss-Prot
Match: P50344 (60S acidic ribosomal protein P1 OS=Davidiella tassiana OX=29918 GN=CLAH12 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0
BLAST of Csor.00g179730 vs. NCBI nr
Match: KAG6582724.1 (60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 263 bits (672), Expect = 3.34e-88 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Csor.00g179730 vs. NCBI nr
Match: XP_022980127.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima]) HSP 1 Score: 120 bits (300), Expect = 5.37e-32 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Csor.00g179730 vs. NCBI nr
Match: XP_023528725.1 (60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo] >KAG7020683.1 60S acidic ribosomal protein P1-1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 120 bits (300), Expect = 5.37e-32 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Csor.00g179730 vs. NCBI nr
Match: XP_022924313.1 (60S acidic ribosomal protein P1-like [Cucurbita moschata]) HSP 1 Score: 117 bits (294), Expect = 4.37e-31 Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0
BLAST of Csor.00g179730 vs. NCBI nr
Match: XP_022144008.1 (60S acidic ribosomal protein P1-like [Momordica charantia]) HSP 1 Score: 112 bits (279), Expect = 8.45e-29 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy TrEMBL
Match: A0A6J1IQJ8 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111479609 PE=3 SV=1) HSP 1 Score: 120 bits (300), Expect = 2.60e-32 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy TrEMBL
Match: A0A6J1EC26 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111431843 PE=3 SV=1) HSP 1 Score: 117 bits (294), Expect = 2.11e-31 Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy TrEMBL
Match: A0A6J1CS45 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111013791 PE=3 SV=1) HSP 1 Score: 112 bits (279), Expect = 4.09e-29 Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy TrEMBL
Match: A0A0A0L5M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1) HSP 1 Score: 109 bits (272), Expect = 4.71e-28 Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0
BLAST of Csor.00g179730 vs. ExPASy TrEMBL
Match: A0A5D3DB57 (60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00330 PE=3 SV=1) HSP 1 Score: 108 bits (271), Expect = 6.67e-28 Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0
BLAST of Csor.00g179730 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family ) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13 Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 0
BLAST of Csor.00g179730 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family ) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13 Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 0
BLAST of Csor.00g179730 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family ) HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 0
BLAST of Csor.00g179730 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family ) HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 0
BLAST of Csor.00g179730 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family ) HSP 1 Score: 71.2 bits (173), Expect = 7.4e-13 Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|