Csor.00g179550 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g179550
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUbiquitin-like protein ATG12
LocationCsor_Chr01: 145368 .. 146490 (-)
RNA-Seq ExpressionCsor.00g179550
SyntenyCsor.00g179550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCCAAACAAGATCTTCCGATCCAAGTCGGAGATTGTACCCCAGACGGAGGGGTGGCAGTTCCATTCCAGCCGTCCACGACGGGGCAAAATGATGGCTTCAACGGAATCTTCTATTTCTACTCGGAAAGATGAGCTTCTTGACGTTGTATGAACAAGCTCATCTTCAAATTGAGCTTATTATGCTATATTTTGATGCATTCAACAGTTGAGCTTTATTCAATCTTTAGACTTAGTTGATCTGATAATAGAAGAACTGTTTCATAGTTTCTGTTTAATTTTGATGTGGTTTTCGATCAAGATTTATTGATGTCAATTCATCGAGACATCTCGGTATTCATCTGAGTTATGAAATAGTCTCTTTTTTGTCTGCCAATTCGCTTGAAACTAACGACAATTCACTATCCTAATTGTTTCTATTCTTTGAAGTTTGTGTTTGTCAACTGCGCACTCTCAACAGGTCCAGATGCGACACTTATTGATTTATATAATGTGAGTTGATATTGACTCATTTCTTCCATTGATGTTTGAGTTGCGTTTGTATTCTGTTTTCTTTAATTTTTGGGAGAAGAAAAGGAGGTGGTGGGGAATTGCTTTTCAGAAGAATTGGCTGGAAATGGAAAATATCTCACAAAAACTCGATAAAAATTGACATCTTAATTGATTGGGTATCTTCATTGAAAGTGCAGAGTATAGACCTCTGATGTTGATGTTGGTCATGAATCATTTATGAAAACACCGATCATCGTATTTTCTTTGGGGTGAAAGAAAAAGGCTCGAAAAACCTAGATTTGGAAACTTTCTGGAGCATGATCATGTGCAAATGTAGCATCAGATGATTACACCTCAATGTTTTATACATTCGTTTTTGTATCGCCTTTCTCTGAGGGGCCGTGTATGGATAAAATTGTTCCGAGTTCATAGCACCTTTTAAACCTGTTAATGTACCTAAGAATAAATATATGGTTTTTCATATTCACATGAGTTTTAAGGTTTTTTTAAAGTCCTAGTGGCTAGGTATCTTGTTGATTTATCATTTTTCCTGTGCCTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTGGTATATTTTACCTGCTCCATTGCTTGGGGCTAA

mRNA sequence

ATGCAAAGCCCAAACAAGATCTTCCGATCCAAGTCGGAGATTGTACCCCAGACGGAGGGGTGGCAGTTCCATTCCAGCCGTCCACGACGGGGCAAAATGATGGCTTCAACGGAATCTTCTATTTCTACTCGGAAAGATGAGCTTCTTGACGTTTTTGTGTTTGTCAACTGCGCACTCTCAACAGGTCCAGATGCGACACTTATTGATTTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTATATTTTACCTGCTCCATTGCTTGGGGCTAA

Coding sequence (CDS)

ATGCAAAGCCCAAACAAGATCTTCCGATCCAAGTCGGAGATTGTACCCCAGACGGAGGGGTGGCAGTTCCATTCCAGCCGTCCACGACGGGGCAAAATGATGGCTTCAACGGAATCTTCTATTTCTACTCGGAAAGATGAGCTTCTTGACGTTTTTGTGTTTGTCAACTGCGCACTCTCAACAGGTCCAGATGCGACACTTATTGATTTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTATATTTTACCTGCTCCATTGCTTGGGGCTAA

Protein sequence

MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
Homology
[Close]
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match: Q8S924 (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Sbjct: 56 LFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match: Q9LVK3 (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Sbjct: 54 LFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match: Q1SF86 (Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          +FV+VN A S  PD  +IDLYNNFG DGKLVV + CS+AWG
Sbjct: 55 LFVYVNSAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match: A2YAG8 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          VF++VN A S  PD  +IDLYNNFGIDG+LVV +  S+AWG
Sbjct: 53 VFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match: Q69NP0 (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 PE=3 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          VF++VN A S  PD  +IDLYNNFGIDG+LVV +  S+AWG
Sbjct: 53 VFLYVNSAFSPNPDELIIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of Csor.00g179550 vs. NCBI nr
Match: KAG6606694.1 (Ubiquitin-like protein ATG12A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036414.1 Ubiquitin-like protein ATG12A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (480), Expect = 1.40e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALS 60
          MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALS
Sbjct: 1  MQSPNKIFRSKSEIVPQTEGWQFHSSRPRRGKMMASTESSISTRKDELLDVFVFVNCALS 60

Query: 61 TGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          TGPDATLIDLYNNFGIDGKLVVYFTCSIAWG
Sbjct: 61 TGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91

[Close]
BLAST of Csor.00g179550 vs. NCBI nr
Match: XP_023526054.1 (ubiquitin-like protein ATG12A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 8.73e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 47 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 93

[Close]
BLAST of Csor.00g179550 vs. NCBI nr
Match: XP_008464001.1 (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 9.19e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. NCBI nr
Match: XP_038878493.1 (ubiquitin-like protein ATG12 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 9.19e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. NCBI nr
Match: XP_022980759.1 (ubiquitin-like protein ATG12 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 9.19e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match: A0A6J1J054 (Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.45e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match: A0A0A0LIA6 (Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.45e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match: A0A6J1GTZ1 (Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.45e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match: A0A1S3CKI1 (Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.45e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 42 STRKDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
          S ++D L   FVFVN A S GPD T+IDLYNNFGIDGKLVV + CS+AWG
Sbjct: 49 SIQRDTL---FVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match: A0A2P5AH35 (Ubiquitin-like protein ATG12 OS=Trema orientale OX=63057 GN=TorRG33x02_350670 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.48e-13
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 45  KDELLDVFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 91
           +D L+D FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Sbjct: 55  RDTLVDHFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 101

[Close]
BLAST of Csor.00g179550 vs. TAIR 10
Match: AT1G54210.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Sbjct: 56 LFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of Csor.00g179550 vs. TAIR 10
Match: AT3G13970.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 VFVFVNCALSTGPDATLIDLYNNFGIDGKLVVYFTCSIAWG 92
          +FV+VN A S  PD ++IDLYNNFG DGKLVV + CS+AWG
Sbjct: 54 LFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

The following BLAST results are available for this feature:
BLAST of Csor.00g179550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S9246.2e-1065.85Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana OX=3702 GN=ATG12A PE=1 SV=... [more]
Q9LVK36.2e-1065.85Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana OX=3702 GN=ATG12B PE=1 SV=... [more]
Q1SF861.1e-0965.85Ubiquitin-like protein ATG12 OS=Medicago truncatula OX=3880 GN=ATG12 PE=3 SV=1[more]
A2YAG81.2e-0863.41Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica OX=39946 GN=ATG12 PE=... [more]
Q69NP01.2e-0863.41Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica OX=39947 GN=ATG12 P... [more]
BLAST of Csor.00g179550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606694.11.40e-60100.00Ubiquitin-like protein ATG12A, partial [Cucurbita argyrosperma subsp. sororia] >... [more]
XP_023526054.18.73e-1468.00ubiquitin-like protein ATG12A isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_008464001.19.19e-1468.00PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo][more]
XP_038878493.19.19e-1468.00ubiquitin-like protein ATG12 [Benincasa hispida][more]
XP_022980759.19.19e-1468.00ubiquitin-like protein ATG12 [Cucurbita maxima][more]
BLAST of Csor.00g179550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J0544.45e-1468.00Ubiquitin-like protein ATG12 OS=Cucurbita maxima OX=3661 GN=LOC111480033 PE=3 SV... [more]
A0A0A0LIA64.45e-1468.00Ubiquitin-like protein ATG12 OS=Cucumis sativus OX=3659 GN=Csa_3G846020 PE=3 SV=... [more]
A0A6J1GTZ14.45e-1468.00Ubiquitin-like protein ATG12 OS=Cucurbita moschata OX=3662 GN=LOC111457534 PE=3 ... [more]
A0A1S3CKI14.45e-1468.00Ubiquitin-like protein ATG12 OS=Cucumis melo OX=3656 GN=LOC103501992 PE=3 SV=1[more]
A0A2P5AH351.48e-1363.83Ubiquitin-like protein ATG12 OS=Trema orientale OX=63057 GN=TorRG33x02_350670 PE... [more]
BLAST of Csor.00g179550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G54210.14.4e-1165.85Ubiquitin-like superfamily protein [more]
AT3G13970.14.4e-1165.85Ubiquitin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007242Ubiquitin-like protein Atg12PFAMPF04110APG12coord: 50..91
e-value: 2.6E-10
score: 40.6
IPR007242Ubiquitin-like protein Atg12PANTHERPTHR13385AUTOPHAGY PROTEIN 12coord: 50..91
NoneNo IPR availableGENE3D3.10.20.90coord: 17..91
e-value: 2.0E-10
score: 43.1
NoneNo IPR availablePANTHERPTHR13385:SF2UBIQUITIN-LIKE PROTEIN ATG12Bcoord: 50..91
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 50..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g179550.m01Csor.00g179550.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0000422 autophagy of mitochondrion
biological_process GO:0044804 autophagy of nucleus
biological_process GO:0006501 C-terminal protein lipidation
cellular_component GO:0034274 Atg12-Atg5-Atg16 complex
cellular_component GO:0034045 phagophore assembly site membrane
cellular_component GO:0005737 cytoplasm