Csor.00g178040 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA MEIEGPEKKKSKETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKKK Homology
BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 162 bits (411), Expect = 2.66e-50 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 153 bits (387), Expect = 1.26e-46 Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0
BLAST of Csor.00g178040 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus]) HSP 1 Score: 76.6 bits (187), Expect = 6.15e-16 Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0
BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 61.6 bits (148), Expect = 3.52e-10 Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0
BLAST of Csor.00g178040 vs. NCBI nr
Match: QCE15984.1 (hypothetical protein DEO72_LG11g2997 [Vigna unguiculata]) HSP 1 Score: 58.5 bits (140), Expect = 5.07e-09 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.98e-16 Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0
BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A4D6NTJ2 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2997 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 2.46e-09 Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0
BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: G7K5Z3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g067050 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 4.59e-09 Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 0
BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0L9UGW4 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g201000 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.99e-09 Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0S3RCU8 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G109300 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 6.99e-09 Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0
BLAST of Csor.00g178040 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04 Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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