Csor.00g178040 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g178040
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
LocationCsor_Chr09: 2931351 .. 2931602 (+)
RNA-Seq ExpressionCsor.00g178040
SyntenyCsor.00g178040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA

mRNA sequence

ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA

Coding sequence (CDS)

ATGGAAATAGAGGGACCAGAGAAAAAGAAGAGCAAAGAAACGATGTCGATTTGGAAGTGTTTGAAGTCGAAGATTTCGGGGAAAAAAGAGGGGACGACGTCGAAAAATGAGCATGGGAAATTCAGCTACGACGCAGTAAGCTACGCTCAGAACTTCGACGACGGGTTGGGGAATGCCGATGATGAAGGATCCTCTCGATCCTTTTCTGCGAGATATGCTGTTGCTTCCAAACCCCCACCTAAAAAGAAATAA

Protein sequence

MEIEGPEKKKSKETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKKK
Homology
BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG6591707.1 (hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162 bits (411), Expect = 2.66e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MEIEGPEKKKSKETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNAD 60
          MEIEGPEKKKSKETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNAD
Sbjct: 1  MEIEGPEKKKSKETMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNAD 60

Query: 61 DEGSSRSFSARYAVASKPPPKKK 83
          DEGSSRSFSARYAVASKPPPKKK
Sbjct: 61 DEGSSRSFSARYAVASKPPPKKK 83

BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG7024589.1 (hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (387), Expect = 1.26e-46
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 1  MEIEGPEKKKSKETMSIWKCLKSKIS-GKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNA 60
          MEIEGPEKKKSKET SIWKCLKSKIS GKKEGTTSKNEHGKFSYDAVSYAQNFDDGL NA
Sbjct: 1  MEIEGPEKKKSKETTSIWKCLKSKISSGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLANA 60

Query: 61 DDEGSSRSFSARYAVASKPPPKKK 83
          DDEGSSRSFSARYAVASKPPPKKK
Sbjct: 61 DDEGSSRSFSARYAVASKPPPKKK 84

BLAST of Csor.00g178040 vs. NCBI nr
Match: KGN60281.1 (hypothetical protein Csa_002688 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 6.15e-16
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 7   EKKKSKE-TMSIWKCLKSKI-SGKKEGT-TSKNEH-----------------GKFSYDAV 66
           EK+K+KE TMS W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64

Query: 67  SYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKK 82
           SYA+NFD+GL NAD EGS RSFSARYAV SKPP KK
Sbjct: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 100

BLAST of Csor.00g178040 vs. NCBI nr
Match: KAG6608120.1 (hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 3.52e-10
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 9  KKSKETMSIWKCLKSKIS-GKKEGTT-----SKNEHGKFSYDAVSYAQNFDDGLGNADDE 68
          K S+E +S W  LK K+   K+EG       +K  +G F YDA+SYAQNFD+GL + D+E
Sbjct: 8  KSSEELVSCWGRLKLKLLLMKREGNNPCIGDTKPLNGGFRYDALSYAQNFDEGLDDEDEE 67

Query: 69 GSSRSFSARYAVASKPPPKKK 83
             R FSARY  ASKP PK K
Sbjct: 68 LRCRGFSARYVSASKPLPKNK 88

BLAST of Csor.00g178040 vs. NCBI nr
Match: QCE15984.1 (hypothetical protein DEO72_LG11g2997 [Vigna unguiculata])

HSP 1 Score: 58.5 bits (140), Expect = 5.07e-09
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 15 MSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAV 74
          +S W CLK K+   K+ T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 16 LSCWGCLKMKLPWTKK-TSSYKPVGGFKYDPLSYAQNFDDGLLEDDEESLQRGFSARYAA 75

Query: 75 AS 76
           S
Sbjct: 76 PS 76

BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0A0LJR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.98e-16
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 7   EKKKSKE-TMSIWKCLKSKI-SGKKEGT-TSKNEH-----------------GKFSYDAV 66
           EK+K+KE TMS W+ L+ KI S KKEG   +KN+                  G F YDA+
Sbjct: 5   EKQKNKEETMSCWERLRMKILSRKKEGNINNKNDTNITCMGGETSGLNNRSGGLFKYDAL 64

Query: 67  SYAQNFDDGLGNADDEGSSRSFSARYAVASKPPPKK 82
           SYA+NFD+GL NAD EGS RSFSARYAV SKPP KK
Sbjct: 65  SYAKNFDEGLANADGEGSFRSFSARYAVPSKPPAKK 100

BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A4D6NTJ2 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2997 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.46e-09
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0

Query: 15 MSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAV 74
          +S W CLK K+   K+ T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 16 LSCWGCLKMKLPWTKK-TSSYKPVGGFKYDPLSYAQNFDDGLLEDDEESLQRGFSARYAA 75

Query: 75 AS 76
           S
Sbjct: 76 PS 76

BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: G7K5Z3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g067050 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.59e-09
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 14 TMSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYA 73
          T+S W C K K+   K   T     G F YD +SY+QNFD+GL   DDE S R FSARYA
Sbjct: 12 TLSCWGCFKLKLPWTKRKNTCNKSTGGFGYDPLSYSQNFDEGL-MEDDEESCRRFSARYA 71

Query: 74 VAS 76
            S
Sbjct: 72 APS 73

BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0L9UGW4 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g201000 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.99e-09
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 15 MSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAV 74
          +S W CLK K+   K  T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 16 LSCWGCLKIKLPWTKR-TSSCKPVGGFKYDPLSYAQNFDDGLVEDDEESLHRGFSARYAA 75

Query: 75 AS 76
           S
Sbjct: 76 PS 76

BLAST of Csor.00g178040 vs. ExPASy TrEMBL
Match: A0A0S3RCU8 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G109300 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.99e-09
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 15 MSIWKCLKSKISGKKEGTTSKNEHGKFSYDAVSYAQNFDDGLGNADDEGSSRSFSARYAV 74
          +S W CLK K+   K  T+S    G F YD +SYAQNFDDGL   D+E   R FSARYA 
Sbjct: 16 LSCWGCLKIKLPWTKR-TSSCKPVGGFKYDPLSYAQNFDDGLVEDDEESLHRGFSARYAA 75

Query: 75 AS 76
           S
Sbjct: 76 PS 76

BLAST of Csor.00g178040 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 4.8e-04
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0

Query: 36  NEHGKFSYDAVSYAQNFDDG--LGNADDEGSSRSFSARYAVASKPPPKK 83
           ++ GKF YD +SY+ NFDDG   G+ DDE   R +S R+A  S P   K
Sbjct: 120 SDQGKFRYDQLSYSLNFDDGNQTGHFDDEFPYRDYSMRFAAPSLPVSTK 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6591707.12.66e-50100.00hypothetical protein SDJN03_14053, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024589.11.26e-4696.43hypothetical protein SDJN02_13407, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN60281.16.15e-1655.21hypothetical protein Csa_002688 [Cucumis sativus][more]
KAG6608120.13.52e-1050.62hypothetical protein SDJN03_01462, partial [Cucurbita argyrosperma subsp. sorori... [more]
QCE15984.15.07e-0953.23hypothetical protein DEO72_LG11g2997 [Vigna unguiculata][more]
Match NameE-valueIdentityDescription
A0A0A0LJR52.98e-1655.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893310 PE=4 SV=1[more]
A0A4D6NTJ22.46e-0953.23Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2997 PE=4 SV=... [more]
G7K5Z34.59e-0950.79Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g067050 PE=4 SV=1[more]
A0A0L9UGW46.99e-0953.23Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g201000 PE... [more]
A0A0S3RCU86.99e-0953.23Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G... [more]
Match NameE-valueIdentityDescription
AT3G01430.14.8e-0446.94BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..83
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 9..78
NoneNo IPR availablePANTHERPTHR33168:SF39SUBFAMILY NOT NAMEDcoord: 9..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g178040.m01Csor.00g178040.m01mRNA