Csor.00g175800 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g175800
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr09: 1771096 .. 1771608 (+)
RNA-Seq ExpressionCsor.00g175800
SyntenyCsor.00g175800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGTTTGCTATCTCATGAATTTTATGAACATTTTAGATTGTTGGACTTCGAAAATTTCAAAGACTGCATACGAATTGCCGGATTCAGAGGTAGCTATGCACAATCCATTCGGACTTGGAACATTACCATTTCTTCAGTTCCTAATCGTTTTGATTATATTCTCAATCAACGCAGCCAAACATCGACATATAAAATAGCATTACCAATTCGAAATCGATTCAATCATACTCGCTCACCTGGCCCTAAAATCTCCGCCGGTGAAGATGACGAAGCGCCGCCGTCAACTCCAATCCTCGAGCACCTACATCAACGGACCTCCGTCTTCTTTCCTCTCTTAACCTCCCCCTCCGCTCTCCTCCGCTTCGGTAAGCTCCCACCGAATTCGCCGGCAGGCGCTCTCCGGTGTCGGACAAACCAAAATCTCCGGCAAATCCGTCGCCGTCCTCGTCCCTCAGAGAATATCAACCACTCGGAAGAGACGGCCCGTCCCGTTGCAGGAACTTCATAA

mRNA sequence

ATGAAATGTTTGCTATCTCATGAATTTTATGAACATTTTAGATTGTTGGACTTCGAAAATTTCAAAGACTGCATACGAATTGCCGGATTCAGAGGTAGCTATGCACAATCCATTCGGACTTGGAACATTACCATTTCTTCAGTTCCTAATCGTTTTGATTATATTCTCAATCAACGCAGCCAAACATCGACATATAAAATAGCATTACCAATTCGAAATCGATTCAATCATACTCGCTCACCTGGCCCTAAAATCTCCGCCGGTGAAGATGACGAAGCGCCGCCGTCAACTCCAATCCTCGAGCACCTACATCAACGGACCTCCGTCTTCTTTCCTCTCTTAACCTCCCCCTCCGCTCTCCTCCGCTTCGGTAAGCTCCCACCGAATTCGCCGGCAGGCGCTCTCCGGTGTCGGACAAACCAAAATCTCCGGCAAATCCGTCGCCGTCCTCGTCCCTCAGAGAATATCAACCACTCGGAAGAGACGGCCCGTCCCGTTGCAGGAACTTCATAA

Coding sequence (CDS)

ATGAAATGTTTGCTATCTCATGAATTTTATGAACATTTTAGATTGTTGGACTTCGAAAATTTCAAAGACTGCATACGAATTGCCGGATTCAGAGGTAGCTATGCACAATCCATTCGGACTTGGAACATTACCATTTCTTCAGTTCCTAATCGTTTTGATTATATTCTCAATCAACGCAGCCAAACATCGACATATAAAATAGCATTACCAATTCGAAATCGATTCAATCATACTCGCTCACCTGGCCCTAAAATCTCCGCCGGTGAAGATGACGAAGCGCCGCCGTCAACTCCAATCCTCGAGCACCTACATCAACGGACCTCCGTCTTCTTTCCTCTCTTAACCTCCCCCTCCGCTCTCCTCCGCTTCGGTAAGCTCCCACCGAATTCGCCGGCAGGCGCTCTCCGGTGTCGGACAAACCAAAATCTCCGGCAAATCCGTCGCCGTCCTCGTCCCTCAGAGAATATCAACCACTCGGAAGAGACGGCCCGTCCCGTTGCAGGAACTTCATAA

Protein sequence

MKCLLSHEFYEHFRLLDFENFKDCIRIAGFRGSYAQSIRTWNITISSVPNRFDYILNQRSQTSTYKIALPIRNRFNHTRSPGPKISAGEDDEAPPSTPILEHLHQRTSVFFPLLTSPSALLRFGKLPPNSPAGALRCRTNQNLRQIRRRPRPSENINHSEETARPVAGTS
Homology
[Close]
BLAST of Csor.00g175800 vs. NCBI nr
Match: KAG6591534.1 (hypothetical protein SDJN03_13880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 347 bits (889), Expect = 2.06e-120
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MKCLLSHEFYEHFRLLDFENFKDCIRIAGFRGSYAQSIRTWNITISSVPNRFDYILNQRS 60
           MKCLLSHEFYEHFRLLDFENFKDCIRIAGFRGSYAQSIRTWNITISSVPNRFDYILNQRS
Sbjct: 1   MKCLLSHEFYEHFRLLDFENFKDCIRIAGFRGSYAQSIRTWNITISSVPNRFDYILNQRS 60

Query: 61  QTSTYKIALPIRNRFNHTRSPGPKISAGEDDEAPPSTPILEHLHQRTSVFFPLLTSPSAL 120
           QTSTYKIALPIRNRFNHTRSPGPKISAGEDDEAPPSTPILEHLHQRTSVFFPLLTSPSAL
Sbjct: 61  QTSTYKIALPIRNRFNHTRSPGPKISAGEDDEAPPSTPILEHLHQRTSVFFPLLTSPSAL 120

Query: 121 LRFGKLPPNSPAGALRCRTNQNLRQIRRRPRPSENINHSEETARPVAGTS 170
           LRFGKLPPNSPAGALRCRTNQNLRQIRRRPRPSENINHSEETARPVAGTS
Sbjct: 121 LRFGKLPPNSPAGALRCRTNQNLRQIRRRPRPSENINHSEETARPVAGTS 170

The following BLAST results are available for this feature:
BLAST of Csor.00g175800 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g175800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591534.12.06e-120100.00hypothetical protein SDJN03_13880, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g175800 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g175800 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g175800.m01Csor.00g175800.m01mRNA