Csor.00g175700 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g175700
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	Csor_Chr09: 1736391 .. 1737609 (+)
RNA-Seq Expression	Csor.00g175700
Synteny	Csor.00g175700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTCCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACGCTCTTCGCATGTAAAATACGAATAGTTCTTGATTTTTTCTTTCTCTATTATTTTGGATTATGGAGGCGAAATCTTTGTTTGATTTGGTGTTTTGCAGTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGTAATTATCCTCATTCCTTGAATCTGGTGATTATTCTTCCATTGTTTTTTTTTTAAAAAATCGTTCTTATGTTCTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATTGTTTCTTTGTTATTCATACGTCCTTTCATGTTAGATTGATAATTTTGCATTCAAATTTGTTCATGAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGGTTAGCTGAATTTGTTTGCTTTTTTTGTGTTGGGGAGGGGATTTCTGTTCTTGATTCCCTTTGATCAAGGAAATATTTCAATACTTTTAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGTGAGCTTCTTGGTGATAGTAATGGAGGTTTGCAAGGACCATTATGTGGGGTTGCTTCAGATGATGAACTGCAGGAGGCCTGAATTCCCTTCCACTTTGGTACTTGTTTTTGCGTCCTTTCTTAATAAACACAAGCTTTTCAATGAATAATTTTGATGTTCTTAATAAATGTTGCCATTTTAGTTCTATTGCTCATTCTTGATTGAATGAATTTTGTTCAATCCATGGAAGTATGAACTTTCCTTCATGTTTTAACACTTCCTCACCTTTACATCTTTCAGGAGTATCAAAGCCAGATTCACTTGTGCTCTTAATGATCCCAACTCTTGA

mRNA sequence

ATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTCCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACGCTCTTCGCATTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGAGGCCTGAATTCCCTTCCACTTTGGAGTATCAAAGCCAGATTCACTTGTGCTCTTAATGATCCCAACTCTTGA

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGATTCCGCCGTGGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGAAAATGTAGAACAAGTCCAAACTCACCTTATTTCCCTCCTGTCTATCGCCGAGCCGGAAGTCCTTGCCCAAATGCAGCCTCTCCAACGAGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACGCTCTTCGCATTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTATCAACACAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGAACCATTGAAGCGTTCCACTACCTTGAACTATCAAGCAGCTACTCGCTTCATTGAACATTCTCTACCCGATCTAACCCAAGATCAAAAGCAGAGTATGAGGGATATTAGTAGGGGGAAGGGGCCAAAAATGCAGCAATTAGAGAGGAACTTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCTAAGGAATTTCTTGAGAAAGCTGCACGAGGCCTGAATTCCCTTCCACTTTGGAGTATCAAAGCCAGATTCACTTGTGCTCTTAATGATCCCAACTCTTGA

Protein sequence

MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLEKAARGLNSLPLWSIKARFTCALNDPNS

Homology

[Close]

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 34/124 (27.42%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + +     +V  V   L  ++S++  E+L +++PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDL 131
           +   G++P +HP+  ELER+  Y ++++          K++  L+  AA RFI+H+L D 
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDP 130

Query: 132 TQDQ 136
           T ++
Sbjct: 132 TSEE 130

[Close]

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 31/117 (26.50%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ D + T  +++  V   L +++S++  E+L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSL 129
           +   G++P +HP+  ELER+  Y +K++          K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 39/143 (27.27%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 7   DSAV--VPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVT 66
           D+AV   P ++ D++     ++  VQ  + +L+S++  + L ++ PL++A+  L+ A   
Sbjct: 4   DAAVEDYPTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYAL 63

Query: 67  TTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFI 126
            ++F + +   GV+P DHPI  ELER+  Y +K++          +++  ++ +AA+RF+
Sbjct: 64  NSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEI-----TDRRKAAHIDKEAASRFV 123

Query: 127 EHSLPDLTQDQKQSMRDISRGKG 148
            ++L D   D+K+  +   + KG
Sbjct: 124 RNALWD-ADDKKRKDKTEHQQKG 140

[Close]

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.5e-07
Identity = 30/117 (25.64%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + + T   ++  V   L +++S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSL 129
           +   GV+P +HP+  ELER+ +Y ++++          K++  L+  AA+RF++++L
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAASRFVKNAL 122

[Close]

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.5e-07
Identity = 34/135 (25.19%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 12  PEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ +S+     ++  V   L +++S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  VRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAATRFIEHSLPDL 131
           +   GV+P +HP+  ELER+ +Y ++++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWE- 130

Query: 132 TQDQKQSMRDISRGK 147
              QK +    ++GK
Sbjct: 131 -PKQKNTPNVANKGK 138

[Close]

BLAST of Csor.00g175700 vs. NCBI nr
Match: KAG6591524.1 (Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392 bits (1007), Expect = 3.52e-137
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGLNSLPLWSIKARFTCALNDPNS 207
           KAARGLNSLPLWSIKARFTCALNDPNS
Sbjct: 181 KAARGLNSLPLWSIKARFTCALNDPNS 207

[Close]

BLAST of Csor.00g175700 vs. NCBI nr
Match: KAG7024413.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344 bits (883), Expect = 3.10e-118
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. NCBI nr
Match: XP_022935937.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 343 bits (880), Expect = 8.88e-118
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLY+DKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. NCBI nr
Match: XP_023534951.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 342 bits (878), Expect = 1.79e-117
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQM PLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMHPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. NCBI nr
Match: XP_022976264.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 342 bits (876), Expect = 3.61e-117
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAA 183
           KAA
Sbjct: 181 KAA 183

[Close]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 343 bits (880), Expect = 4.30e-118
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLY+DKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL
Match: A0A6J1IN17 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111476708 PE=3 SV=1)

HSP 1 Score: 342 bits (876), Expect = 1.75e-117
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAA 183
           KAA
Sbjct: 181 KAA 183

[Close]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 315 bits (807), Expect = 5.86e-107
Identity = 170/186 (91.40%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 314 bits (805), Expect = 1.14e-106
Identity = 166/186 (89.25%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+SAVVPEKVMDSVK TL+NVEQVQTHLIS LSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           +R TTTLFALK+RCSGVHPDDHPI +ELERLSLYQ+KLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGPKM+Q+ER +QKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL
Match: A0A6J1J0U0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111480869 PE=3 SV=1)

HSP 1 Score: 312 bits (799), Expect = 8.43e-106
Identity = 165/186 (88.71%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+SAVVPEK MDSVK TL++VEQVQTHLIS LSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120
           +R TTTLFALK+RCSGVHPDDHPI +ELERLSLYQ+KLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQ+QKQ MRDISRGKGPKM+QLER +QKKRKYQSSEKQSVQIAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARGL 186
           KAAR L
Sbjct: 181 KAAREL 186

[Close]

BLAST of Csor.00g175700 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 188.0 bits (476), Expect = 7.8e-48
Identity = 103/189 (54.50%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   MEGGVRDS-----AVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQ 60
           MEGG   S      VVPE  +++V  TL  +++++  L  +L++AEPEVLA MQPLQRA+
Sbjct: 1   MEGGGGSSGGGAGGVVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAK 60

Query: 61  SMLLLARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTL 120
           +M LLA  TTTL+ L++RC+GV PDDH + +E+ER+++Y++K ++ +  SK PL+ +T L
Sbjct: 61  TMHLLAEATTTLYELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVL 120

Query: 121 NYQAATRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAA 180
           N QAATRFIEHSLPDLT  QKQS+RD+S+G+  +++  E +  +KRKYQS+EKQSVQ AA
Sbjct: 121 NRQAATRFIEHSLPDLTSTQKQSIRDLSKGEKSRIRYSETS-ARKRKYQSNEKQSVQSAA 180

Query: 181 KEFLEKAAR 185
           K+FLEKAAR
Sbjct: 181 KDFLEKAAR 188

The following BLAST results are available for this feature:

BLAST of Csor.00g175700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	4.5e-08	27.42	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	5.9e-08	26.50	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	1.0e-07	27.27	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q32PE4	8.5e-07	25.64	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q7TSU0	8.5e-07	25.19	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]

BLAST of Csor.00g175700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591524.1	3.52e-137	100.00	Nuclear nucleic acid-binding protein C1D, partial [Cucurbita argyrosperma subsp....	[more]
KAG7024413.1	3.10e-118	99.46	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022935937.1	8.88e-118	98.92	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata]	[more]
XP_023534951.1	1.79e-117	98.92	nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976264.1	3.61e-117	100.00	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima]	[more]

BLAST of Csor.00g175700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F700	4.30e-118	98.92	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IN17	1.75e-117	100.00	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L118	5.86e-107	91.40	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A6J1FIR0	1.14e-106	89.25	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J0U0	8.43e-106	88.71	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Csor.00g175700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	7.8e-48	54.50	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 9..186
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 9..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g175700.m01	Csor.00g175700.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding