Csor.00g175230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g175230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein 2-like isoform X1
Location	Csor_Chr09: 1489169 .. 1490927 (-)
RNA-Seq Expression	Csor.00g175230
Synteny	Csor.00g175230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGTAAGAATTTTATCTTTAGCATAAAATATATTTATTTAATGAGTGCTTTACATGACTTGTGACTGTCGAAAAATTCATCAGGACCGGTAGCTTATGGATATACTGAAGTAGGAACCATTAGTAATTACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGATCTCCATTTGAAGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTTTGCCTCGTGCTTACTTTTGTTACTATTTCTCCTGTCTCTCCAACTTTATTTACACCCTGTGCTTTAACTTTCCTAGGGTGTAGGCAGCATCCCAAACAAGTTGAGCTTCTGTTAAAACTTAAAACAACCATTGTTGTCTTCTCGATGTCACTTTAGTCAAAGAAAATAGGACGTAAATTGCATTAGACAGAACTATTGTCACGTAATCATGTTTTGTCATATCTTAACTTCGAATTGTAAGATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGGTAAGTTATCAGGCTCCCTTTACTTTAAAATTTAAACTATGGAGGCATGTTTTACTACGATAAGGCCTTCATTGGCAATTAACAACTGCATGCACTCTATGGTGGAGGTCCTGTTTATAATTATTGTGTCCTTATGCTCAGATTTTATGGTATTATTTTTCTTCTGTCATATGTTCTTAAACGTCATTGTACATTCCTTCTGTTATAACGAGTAATTGAACTGCAGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTATTGTATGATTTGTTCCTCTCTGTACGGGTGATAATCTAAGTCAAAACGTAAAGATAAGTGCTTGAAGAAACTGAAAACATGCAGCAGTATTTAGGGATTCTTATTGTGTATTGCTTGGTACATAAAATTTATGATCTAGTATTTAGCTAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGGCCAAACTGTATGATAAACCAAATGTTTCAGGTACTTGGGCACTCCTAAATCACTCACCAAAATAATGCCTCCGTTCTCCTTTCCCACTACCTGTTTAACTAATGATGCCATTGACATTATTTATGAACGGACACTCGATCAATGAATTTCTTTAAATGAACTAGGACAACTCTTAAAATGCTTCATATAAATTTAGATAATCTGATGTATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

mRNA sequence

ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

Coding sequence (CDS)

ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

Protein sequence

MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR

Homology

[Close]

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-22
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 223 DDGR 227
              R
Sbjct: 418 GGRR 421

[Close]

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 127 SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYAR 186
           S  ++++GLP+DCTRREV H+FRPF+GY+++R+V KE + RGD   +LCFV+F     A 
Sbjct: 150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFVDFANPACAA 209

Query: 187 AAMEALQGYKFDDKKPDSPALKIQFAHFP 216
            A+ ALQGYK D+  P+S  L++QF+ +P
Sbjct: 210 TALSALQGYKVDEINPESSHLRLQFSRYP 237

[Close]

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-22
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           P+    S+ ++V+GLP+D T+REV H+FRPF+GY+++R+V KE + RG    +LCFV+F 
Sbjct: 145 PLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFA 204

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 218
               A  A+ ALQGYK D+  P+S  L++QF+  P R
Sbjct: 205 NPACAATALSALQGYKVDEINPESSYLRLQFSRSPGR 241

[Close]

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-18
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           P+    S+ ++++GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F 
Sbjct: 31  PLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFD 90

Query: 181 EARYARAAMEALQGYKFDDKKPDSPA 207
               A  A+EALQG+  DD    +PA
Sbjct: 91  NPAQATIALEALQGHVTDDVNVSAPA 116

[Close]

BLAST of Csor.00g175230 vs. NCBI nr
Match: KAG6591477.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461 bits (1186), Expect = 7.70e-164
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
           NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD
Sbjct: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226

[Close]

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_022936248.1 (nuclear speckle RNA-binding protein A-like [Cucurbita moschata])

HSP 1 Score: 364 bits (935), Expect = 1.17e-125
Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0


Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGRPVAYG---YTEVGTISNYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
               +    +    ++    DSLASQRQDIAVGSSPGLMDMA+IGHERANSLGLRTADCD
Sbjct: 61  EP--VIGGGLSAKGYRSPFEDSLASQRQDIAVGSSPGLMDMADIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGY+FDDKK DSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFRLPSNHDDGR 221

[Close]

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 317 bits (812), Expect = 1.34e-106
Identity = 167/231 (72.29%), Postives = 173/231 (74.89%), Query Frame = 0


Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK                  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 96  -------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 155
                                    DSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 156 TADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLC 215
           TA+ DP SSRESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKA VLC
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLC 192

Query: 216 FVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FVEFIEARYAR AMEALQGYKFDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Sbjct: 193 FVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFRLPSNHDDRR 243

[Close]

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK20076.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (801), Expect = 6.77e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0


Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

[Close]

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 312 bits (800), Expect = 9.28e-105
Identity = 167/232 (71.98%), Postives = 173/232 (74.57%), Query Frame = 0


Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK                  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 96  -------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 155
                                    DSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 156 TADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLC 215
           TA+ DP SSRESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKA VLC
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLC 192

Query: 216 FVEFIEARYARAAMEALQ-GYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FVEFIEARYAR AMEALQ GYKFDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Sbjct: 193 FVEFIEARYARTAMEALQAGYKFDDKKPDSPSLKIQFAHFPFRLPSNHDDRR 244

[Close]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1FCR4 (nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442922 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 5.65e-126
Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0


Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGRPVAYG---YTEVGTISNYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
               +    +    ++    DSLASQRQDIAVGSSPGLMDMA+IGHERANSLGLRTADCD
Sbjct: 61  EP--VIGGGLSAKGYRSPFEDSLASQRQDIAVGSSPGLMDMADIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGY+FDDKK DSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFRLPSNHDDGR 221

[Close]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 3.28e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0


Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

[Close]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 3.28e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0


Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

[Close]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BUL5 (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 1.29e-104
Identity = 159/227 (70.04%), Postives = 172/227 (75.77%), Query Frame = 0


Query: 40  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR------------------- 99
           GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                    
Sbjct: 16  GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGGNSKY 75

Query: 100 ----------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL-RTA 159
                                 DSLASQRQDIAVGSSPG+M  A+IGHERANSL + RTA
Sbjct: 76  PEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSIIRTA 135

Query: 160 DCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFV 219
           +CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFV
Sbjct: 136 ECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATVLCFV 195

Query: 220 EFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           EF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 196 EFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 242

[Close]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 1.67e-102
Identity = 161/228 (70.61%), Postives = 168/228 (73.68%), Query Frame = 0


Query: 39  AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD------------------- 98
           AGSVARSGLS YSEAPPLTSYPNSTSID W IPPD  QK                     
Sbjct: 16  AGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSGPGTYGYTDVGGIRNY 75

Query: 99  ---------------------RDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTAD 158
                                 D+ A QR DIAVGSSPGLM MA+ GHE+ANSLGLR  +
Sbjct: 76  PEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPE 135

Query: 159 CDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE 218
             PIS+ ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE
Sbjct: 136 RVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE 195

Query: 219 FIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FIEARY+RAAMEALQGYKFDDKKPDS ALKIQFAHFPFRLPSNHDD R
Sbjct: 196 FIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHDDRR 243

[Close]

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 223 DDGR 227
              R
Sbjct: 418 GGRR 421

[Close]

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 130 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 189

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 190 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 249

Query: 223 DDGR 227
              R
Sbjct: 250 GGRR 253

[Close]

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

[Close]

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 63  IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 122

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 123 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 173

[Close]

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 128 NIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARA 187
           N +FV GLP D   RE+ +LFR   G++  ++ +     RGD+  V+ F  F   R+A A
Sbjct: 37  NTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKY---TGRGDQ--VVAFATFTSHRFALA 96

Query: 188 AMEALQGYKFD 199
           AM  L G KFD
Sbjct: 97  AMNELNGVKFD 102

The following BLAST results are available for this feature:

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HWF9	1.2e-22	38.71	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q8H0P8	2.1e-22	50.56	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
G7ID19	6.0e-22	46.39	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
A1A6K6	1.3e-21	41.38	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	3.1e-18	46.51	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Csor.00g175230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591477.1	7.70e-164	100.00	RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022936248.1	1.17e-125	82.74	nuclear speckle RNA-binding protein A-like [Cucurbita moschata]	[more]
XP_038896813.1	1.34e-106	72.29	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_008452748.1	6.77e-105	69.70	PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RN...	[more]
XP_038896812.1	9.28e-105	71.98	RNA-binding protein 2-like isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g175230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCR4	5.65e-126	82.74	nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A5D3D938	3.28e-105	69.70	RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BU06	3.28e-105	69.70	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A1S3BUL5	1.29e-104	70.04	RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A6J1J4R2	1.67e-102	70.61	RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1	[more]

BLAST of Csor.00g175230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.1	8.6e-24	38.71	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	8.6e-24	38.71	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	9.5e-23	41.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	9.5e-23	41.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	1.6e-06	40.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 129..206 e-value: 1.1E-4 score: 31.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 130..201 e-value: 1.3E-12 score: 47.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 128..214 score: 11.519956
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 122..214 e-value: 1.4E-17 score: 65.6
None	No IPR available	PANTHER	PTHR10501:SF41	PROTEIN COUCH POTATO	coord: 45..219
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 45..219
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 128..210 e-value: 2.33975E-32 score: 110.822
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 107..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g175230.m01	Csor.00g175230.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding