Csor.00g175230 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g175230
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRNA-binding protein 2-like isoform X1
LocationCsor_Chr09: 1489169 .. 1490927 (-)
RNA-Seq ExpressionCsor.00g175230
SyntenyCsor.00g175230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGTAAGAATTTTATCTTTAGCATAAAATATATTTATTTAATGAGTGCTTTACATGACTTGTGACTGTCGAAAAATTCATCAGGACCGGTAGCTTATGGATATACTGAAGTAGGAACCATTAGTAATTACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGATCTCCATTTGAAGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTTTGCCTCGTGCTTACTTTTGTTACTATTTCTCCTGTCTCTCCAACTTTATTTACACCCTGTGCTTTAACTTTCCTAGGGTGTAGGCAGCATCCCAAACAAGTTGAGCTTCTGTTAAAACTTAAAACAACCATTGTTGTCTTCTCGATGTCACTTTAGTCAAAGAAAATAGGACGTAAATTGCATTAGACAGAACTATTGTCACGTAATCATGTTTTGTCATATCTTAACTTCGAATTGTAAGATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGGTAAGTTATCAGGCTCCCTTTACTTTAAAATTTAAACTATGGAGGCATGTTTTACTACGATAAGGCCTTCATTGGCAATTAACAACTGCATGCACTCTATGGTGGAGGTCCTGTTTATAATTATTGTGTCCTTATGCTCAGATTTTATGGTATTATTTTTCTTCTGTCATATGTTCTTAAACGTCATTGTACATTCCTTCTGTTATAACGAGTAATTGAACTGCAGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTATTGTATGATTTGTTCCTCTCTGTACGGGTGATAATCTAAGTCAAAACGTAAAGATAAGTGCTTGAAGAAACTGAAAACATGCAGCAGTATTTAGGGATTCTTATTGTGTATTGCTTGGTACATAAAATTTATGATCTAGTATTTAGCTAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGGCCAAACTGTATGATAAACCAAATGTTTCAGGTACTTGGGCACTCCTAAATCACTCACCAAAATAATGCCTCCGTTCTCCTTTCCCACTACCTGTTTAACTAATGATGCCATTGACATTATTTATGAACGGACACTCGATCAATGAATTTCTTTAAATGAACTAGGACAACTCTTAAAATGCTTCATATAAATTTAGATAATCTGATGTATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

mRNA sequence

ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

Coding sequence (CDS)

ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA

Protein sequence

MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
Homology
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-22
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 223 DDGR 227
              R
Sbjct: 418 GGRR 421

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 127 SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYAR 186
           S  ++++GLP+DCTRREV H+FRPF+GY+++R+V KE + RGD   +LCFV+F     A 
Sbjct: 150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFVDFANPACAA 209

Query: 187 AAMEALQGYKFDDKKPDSPALKIQFAHFP 216
            A+ ALQGYK D+  P+S  L++QF+ +P
Sbjct: 210 TALSALQGYKVDEINPESSHLRLQFSRYP 237

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.0e-22
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           P+    S+ ++V+GLP+D T+REV H+FRPF+GY+++R+V KE + RG    +LCFV+F 
Sbjct: 145 PLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFA 204

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 218
               A  A+ ALQGYK D+  P+S  L++QF+  P R
Sbjct: 205 NPACAATALSALQGYKVDEINPESSYLRLQFSRSPGR 241

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-18
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           P+    S+ ++++GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F 
Sbjct: 31  PLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFD 90

Query: 181 EARYARAAMEALQGYKFDDKKPDSPA 207
               A  A+EALQG+  DD    +PA
Sbjct: 91  NPAQATIALEALQGHVTDDVNVSAPA 116

BLAST of Csor.00g175230 vs. NCBI nr
Match: KAG6591477.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461 bits (1186), Expect = 7.70e-164
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0

Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
           NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD
Sbjct: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_022936248.1 (nuclear speckle RNA-binding protein A-like [Cucurbita moschata])

HSP 1 Score: 364 bits (935), Expect = 1.17e-125
Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0

Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGRPVAYG---YTEVGTISNYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
               +    +    ++    DSLASQRQDIAVGSSPGLMDMA+IGHERANSLGLRTADCD
Sbjct: 61  EP--VIGGGLSAKGYRSPFEDSLASQRQDIAVGSSPGLMDMADIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGY+FDDKK DSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFRLPSNHDDGR 221

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 317 bits (812), Expect = 1.34e-106
Identity = 167/231 (72.29%), Postives = 173/231 (74.89%), Query Frame = 0

Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK                  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 96  -------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 155
                                    DSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 156 TADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLC 215
           TA+ DP SSRESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKA VLC
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLC 192

Query: 216 FVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FVEFIEARYAR AMEALQGYKFDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Sbjct: 193 FVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFRLPSNHDDRR 243

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK20076.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (801), Expect = 6.77e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0

Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 312 bits (800), Expect = 9.28e-105
Identity = 167/232 (71.98%), Postives = 173/232 (74.57%), Query Frame = 0

Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPLTSYPNSTSIDQW+I PD  QK                  
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIGPGAYGYTDVGGI 72

Query: 96  -------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLR 155
                                    DSLASQRQDIAVGSSPG+M MA+  HERANSL LR
Sbjct: 73  SNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMADTAHERANSLSLR 132

Query: 156 TADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLC 215
           TA+ DP SSRESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKA VLC
Sbjct: 133 TAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLC 192

Query: 216 FVEFIEARYARAAMEALQ-GYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FVEFIEARYAR AMEALQ GYKFDDKKPDSP+LKIQFAHFPFRLPSNHDD R
Sbjct: 193 FVEFIEARYARTAMEALQAGYKFDDKKPDSPSLKIQFAHFPFRLPSNHDDRR 244

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1FCR4 (nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442922 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 5.65e-126
Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0

Query: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYP 60
           MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAG     G   Y+E   +++YP
Sbjct: 1   MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGRPVAYG---YTEVGTISNYP 60

Query: 61  NSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCD 120
               +    +    ++    DSLASQRQDIAVGSSPGLMDMA+IGHERANSLGLRTADCD
Sbjct: 61  EP--VIGGGLSAKGYRSPFEDSLASQRQDIAVGSSPGLMDMADIGHERANSLGLRTADCD 120

Query: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 180
           PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRR GDKATVLCFVEFI
Sbjct: 121 PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRCGDKATVLCFVEFI 180

Query: 181 EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           EARYARAAMEALQGY+FDDKK DSPALKIQFAHFPFRLPSNHDDGR
Sbjct: 181 EARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFRLPSNHDDGR 221

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 3.28e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0

Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 313 bits (801), Expect = 3.28e-105
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0

Query: 36  AHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR--------------- 95
           A  AGSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                
Sbjct: 13  ADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGG 72

Query: 96  --------------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL 155
                                     DSLASQRQDIAVGSSPG+M  A+IGHERANSL +
Sbjct: 73  NSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSI 132

Query: 156 -RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATV 215
            RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATV
Sbjct: 133 IRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATV 192

Query: 216 LCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           LCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 193 LCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 243

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BUL5 (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 1.29e-104
Identity = 159/227 (70.04%), Postives = 172/227 (75.77%), Query Frame = 0

Query: 40  GSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDR------------------- 99
           GSVARSGLSTYSEAPPL SYPNSTSIDQW+ PP D+   D                    
Sbjct: 16  GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSLGPGAYGYTDLGGNSKY 75

Query: 100 ----------------------DSLASQRQDIAVGSSPGLMDMAEIGHERANSLGL-RTA 159
                                 DSLASQRQDIAVGSSPG+M  A+IGHERANSL + RTA
Sbjct: 76  PEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRADIGHERANSLSIIRTA 135

Query: 160 DCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFV 219
           +CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDIRVVHKEPRR GDKATVLCFV
Sbjct: 136 ECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRSGDKATVLCFV 195

Query: 220 EFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 224
           EF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD
Sbjct: 196 EFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDD 242

BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 1.67e-102
Identity = 161/228 (70.61%), Postives = 168/228 (73.68%), Query Frame = 0

Query: 39  AGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHD------------------- 98
           AGSVARSGLS YSEAPPLTSYPNSTSID W IPPD  QK                     
Sbjct: 16  AGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSGPGTYGYTDVGGIRNY 75

Query: 99  ---------------------RDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTAD 158
                                 D+ A QR DIAVGSSPGLM MA+ GHE+ANSLGLR  +
Sbjct: 76  PEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPE 135

Query: 159 CDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE 218
             PIS+ ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE
Sbjct: 136 RVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVE 195

Query: 219 FIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR 226
           FIEARY+RAAMEALQGYKFDDKKPDS ALKIQFAHFPFRLPSNHDD R
Sbjct: 196 FIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRLPSNHDDRR 243

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

Query: 223 DDGR 227
              R
Sbjct: 418 GGRR 421

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 103 EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 162
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 130 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 189

Query: 163 EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNH 222
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P   
Sbjct: 190 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 249

Query: 223 DDGR 227
              R
Sbjct: 250 GGRR 253

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 104 IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 163
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 63  IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 122

Query: 164 PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLP 220
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P
Sbjct: 123 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 173

BLAST of Csor.00g175230 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0

Query: 128 NIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARA 187
           N +FV GLP D   RE+ +LFR   G++  ++ +     RGD+  V+ F  F   R+A A
Sbjct: 37  NTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKY---TGRGDQ--VVAFATFTSHRFALA 96

Query: 188 AMEALQGYKFD 199
           AM  L G KFD
Sbjct: 97  AMNELNGVKFD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F4HWF91.2e-2238.71Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE... [more]
Q8H0P82.1e-2250.56RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1[more]
G7ID196.0e-2246.39RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1[more]
A1A6K61.3e-2141.38Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE... [more]
Q6JB113.1e-1846.51Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
KAG6591477.17.70e-164100.00RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022936248.11.17e-12582.74nuclear speckle RNA-binding protein A-like [Cucurbita moschata][more]
XP_038896813.11.34e-10672.29RNA-binding protein 2-like isoform X2 [Benincasa hispida][more]
XP_008452748.16.77e-10569.70PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RN... [more]
XP_038896812.19.28e-10571.98RNA-binding protein 2-like isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1FCR45.65e-12682.74nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A5D3D9383.28e-10569.70RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BU063.28e-10569.70RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE... [more]
A0A1S3BUL51.29e-10470.04RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE... [more]
A0A6J1J4R21.67e-10270.61RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G21320.18.6e-2438.71nucleotide binding;nucleic acid binding [more]
AT1G21320.28.6e-2438.71nucleotide binding;nucleic acid binding [more]
AT1G76940.19.5e-2341.38RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G76940.29.5e-2341.38RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G13700.21.6e-0640.85RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 129..206
e-value: 1.1E-4
score: 31.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 130..201
e-value: 1.3E-12
score: 47.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 128..214
score: 11.519956
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 122..214
e-value: 1.4E-17
score: 65.6
NoneNo IPR availablePANTHERPTHR10501:SF41PROTEIN COUCH POTATOcoord: 45..219
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 45..219
NoneNo IPR availableCDDcd12420RRM_RBPMS_likecoord: 128..210
e-value: 2.33975E-32
score: 110.822
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 107..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g175230.m01Csor.00g175230.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding