
Csor.00g175230 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGTAAGAATTTTATCTTTAGCATAAAATATATTTATTTAATGAGTGCTTTACATGACTTGTGACTGTCGAAAAATTCATCAGGACCGGTAGCTTATGGATATACTGAAGTAGGAACCATTAGTAATTACCCGGAACCAGTTATTGGGGGCGGTTTGAGTGCAAAAGGCTACAGATCTCCATTTGAAGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTTTGCCTCGTGCTTACTTTTGTTACTATTTCTCCTGTCTCTCCAACTTTATTTACACCCTGTGCTTTAACTTTCCTAGGGTGTAGGCAGCATCCCAAACAAGTTGAGCTTCTGTTAAAACTTAAAACAACCATTGTTGTCTTCTCGATGTCACTTTAGTCAAAGAAAATAGGACGTAAATTGCATTAGACAGAACTATTGTCACGTAATCATGTTTTGTCATATCTTAACTTCGAATTGTAAGATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGGTAAGTTATCAGGCTCCCTTTACTTTAAAATTTAAACTATGGAGGCATGTTTTACTACGATAAGGCCTTCATTGGCAATTAACAACTGCATGCACTCTATGGTGGAGGTCCTGTTTATAATTATTGTGTCCTTATGCTCAGATTTTATGGTATTATTTTTCTTCTGTCATATGTTCTTAAACGTCATTGTACATTCCTTCTGTTATAACGAGTAATTGAACTGCAGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTATTGTATGATTTGTTCCTCTCTGTACGGGTGATAATCTAAGTCAAAACGTAAAGATAAGTGCTTGAAGAAACTGAAAACATGCAGCAGTATTTAGGGATTCTTATTGTGTATTGCTTGGTACATAAAATTTATGATCTAGTATTTAGCTAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGGCCAAACTGTATGATAAACCAAATGTTTCAGGTACTTGGGCACTCCTAAATCACTCACCAAAATAATGCCTCCGTTCTCCTTTCCCACTACCTGTTTAACTAATGATGCCATTGACATTATTTATGAACGGACACTCGATCAATGAATTTCTTTAAATGAACTAGGACAACTCTTAAAATGCTTCATATAAATTTAGATAATCTGATGTATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA ATGGAAGTCTCCCTTCTCCTTATGCGATGTGAAGTGTGGAGTACATGGTTTGTAGATTTAACCGATTCTGCGAACAGCATACTTCAAGCTAATGTTCAATTGTTGGCTCATGCAGCAGGAAGTGTAGCGAGGTCTGGCCTTTCAACATACTCTGAAGCACCTCCTTTGACATCTTACCCTAATTCGACCTCTATTGACCAATGGTACATCCCTCCTGATGATTTTCAGAAACATGACCGAGATTCATTAGCAAGTCAAAGACAAGATATTGCAGTGGGCAGTAGTCCAGGACTCATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCACGATGACGGGCGATGA MEVSLLLMRCEVWSTWFVDLTDSANSILQANVQLLAHAAGSVARSGLSTYSEAPPLTSYPNSTSIDQWYIPPDDFQKHDRDSLASQRQDIAVGSSPGLMDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNHDDGR Homology
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.2e-22 Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22 Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 6.0e-22 Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.1e-18 Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0
BLAST of Csor.00g175230 vs. NCBI nr
Match: KAG6591477.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 461 bits (1186), Expect = 7.70e-164 Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_022936248.1 (nuclear speckle RNA-binding protein A-like [Cucurbita moschata]) HSP 1 Score: 364 bits (935), Expect = 1.17e-125 Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0
BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida]) HSP 1 Score: 317 bits (812), Expect = 1.34e-106 Identity = 167/231 (72.29%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK20076.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 313 bits (801), Expect = 6.77e-105 Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0
BLAST of Csor.00g175230 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida]) HSP 1 Score: 312 bits (800), Expect = 9.28e-105 Identity = 167/232 (71.98%), Postives = 173/232 (74.57%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1FCR4 (nuclear speckle RNA-binding protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442922 PE=4 SV=1) HSP 1 Score: 364 bits (935), Expect = 5.65e-126 Identity = 187/226 (82.74%), Postives = 197/226 (87.17%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1) HSP 1 Score: 313 bits (801), Expect = 3.28e-105 Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1) HSP 1 Score: 313 bits (801), Expect = 3.28e-105 Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A1S3BUL5 (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1) HSP 1 Score: 311 bits (797), Expect = 1.29e-104 Identity = 159/227 (70.04%), Postives = 172/227 (75.77%), Query Frame = 0
BLAST of Csor.00g175230 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1) HSP 1 Score: 306 bits (783), Expect = 1.67e-102 Identity = 161/228 (70.61%), Postives = 168/228 (73.68%), Query Frame = 0
BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24 Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding ) HSP 1 Score: 108.2 bits (269), Expect = 8.6e-24 Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of Csor.00g175230 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 104.8 bits (260), Expect = 9.5e-23 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of Csor.00g175230 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06 Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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