Csor.00g174720 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g174720
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LIM domain-containing protein WLIM1
Location	Csor_Chr09: 1247861 .. 1248809 (+)
RNA-Seq Expression	Csor.00g174720
Synteny	Csor.00g174720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGCAGGAACCACCCAGAAGTGCATGGCCTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGGTAAATCAAATATCAAATCAAACTGTTTTAGATTCCCTGTTTCTGGGCTCTCTTCAATTCAATTCATCCATATCATGAGATCTCAGATCGCTGTCTCCAACCTTAATTTTGGTGGGCTTTGTTTAGATTAAATCATTCACTGATTACAGATCTGACTTGCAGCTAAGCAATTACAACTCCTTCGAAGGGGTGCTCTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGTATTAAGTAGGAAAAAAAGATAGATTTTAAATCTTCTCTTCAGCTCAAACCAACATTCTTGGTATATTGATTTTAGGAACACCAAAGATTGGGAAACCGGAGAAACCAGCTGATTCTGAGGTAGCTACCTAAATTTTGTTTGGTGTTTTCAACTCAAAATTTCTTGTTCTTTAAGGGTTTGATCAAATGCATTTAACAGAGACCGACAGCGACCAAGGTTGCAAGCATGTTTGTCGGCACAAAAGACAAATGCCTTGGCTGTAAGAACACAGTGTATCCGACTGAGAAGGTAAGTTCTGTTTCTGATTTGGGTAATTGAAATAGTTTTAGATTCAAAAGAGACCCATTTGAACGTTTGTTTTGTTGGTTCTTTCTTTCAGGTTTCAGTGAATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATTAGCCCATCAAATTACATTGCCCATGAAGGCCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAGGGAAGCCATTAA

mRNA sequence

ATGGCGTTTGCAGGAACCACCCAGAAGTGCATGGCCTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGCTAAGCAATTACAACTCCTTCGAAGGGGTGCTCTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAACCGGAGAAACCAGCTGATTCTGAGAGACCGACAGCGACCAAGGTTGCAAGCATGTTTGTCGGCACAAAAGACAAATGCCTTGGCTGTAAGAACACAGTGTATCCGACTGAGAAGGTTTCAGTGAATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATTAGCCCATCAAATTACATTGCCCATGAAGGCCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAGGGAAGCCATTAA

Coding sequence (CDS)

ATGGCGTTTGCAGGAACCACCCAGAAGTGCATGGCCTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCTGACAATCGTGTCTACCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGCTAAGCAATTACAACTCCTTCGAAGGGGTGCTCTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACTGGAAGCTTAGACAAAAGCTTCGAAGGAACACCAAAGATTGGGAAACCGGAGAAACCAGCTGATTCTGAGAGACCGACAGCGACCAAGGTTGCAAGCATGTTTGTCGGCACAAAAGACAAATGCCTTGGCTGTAAGAACACAGTGTATCCGACTGAGAAGGTTTCAGTGAATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATTAGCCCATCAAATTACATTGCCCATGAAGGCCGACTTTACTGCAAACATCACCATACCCAACTCATCAAAGAAAAAGGAAACTTGAGCCAGCTGGAGGGAAGCCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH

Homology

[Close]

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 6.1e-94
Identity = 155/177 (87.57%), Postives = 165/177 (93.22%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + ERP  TKV++MF GT++KC+GC  TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-76
Identity = 126/175 (72.00%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RVYHKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPTE 121
           FDQLFKRTGSL+KSF+GTPK  KPE+    E  +A +++S F GT+DKC  C   VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLE 177
           +V V+GT+YH++CFKCCHGGCTISPSNYIAHEGRLYCKHHH QL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.4e-59
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 104/179 (58.10%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERP----TATKVASMFVGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55
Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC ACDKTVY++D LT +   YHK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HF+QLFK +G+  K+F+     GK EKP D    T +K++S F GT+DKC  CK TVYP 
Sbjct: 61  HFEQLFKESGNYSKNFQA----GKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPL 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV++ G SYHK+CF+C H GC ++ S+Y +  G LYCK H  QL  EKG+ + +
Sbjct: 121 EKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHV 171

[Close]

BLAST of Csor.00g174720 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387 bits (994), Expect = 3.96e-136
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. NCBI nr
Match: XP_023536448.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387 bits (994), Expect = 2.12e-135
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 48  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 107

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 108 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 167

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 168 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226

[Close]

BLAST of Csor.00g174720 vs. NCBI nr
Match: XP_022936105.1 (LIM domain-containing protein WLIM1 [Cucurbita moschata])

HSP 1 Score: 385 bits (989), Expect = 2.29e-135
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. NCBI nr
Match: XP_022977103.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 384 bits (986), Expect = 3.39e-134
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 47  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 106

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 107 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 166

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHG CTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 167 EKVSVNGTSYHKSCFKCCHGRCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 225

[Close]

BLAST of Csor.00g174720 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 381 bits (978), Expect = 1.09e-133
Identity = 175/179 (97.77%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATK+ASMFVGTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 385 bits (989), Expect = 1.11e-135
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL
Match: A0A6J1IP16 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111477270 PE=4 SV=1)

HSP 1 Score: 384 bits (986), Expect = 1.64e-134
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 47  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 106

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT
Sbjct: 107 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 166

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHG CTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 167 EKVSVNGTSYHKSCFKCCHGRCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 225

[Close]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 378 bits (971), Expect = 6.18e-133
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE+PTATKVASMFVGTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 8.77e-133
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE+PTATKVASMF+GTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL
Match: A0A1S3BUC8 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 8.77e-133
Identity = 173/179 (96.65%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSE+PTATKVASMF+GTKDKCLGC  TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179
           EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Csor.00g174720 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.7 bits (883), Expect = 4.3e-95
Identity = 155/177 (87.57%), Postives = 165/177 (93.22%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + ERP  TKV++MF GT++KC+GC  TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGT YHKSCFKC HGGCTISPSNYIAHEG+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Csor.00g174720 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 228.4 bits (581), Expect = 4.5e-60
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP      T +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Csor.00g174720 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-58
Identity = 104/179 (58.10%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERP----TATKVASMFVGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Csor.00g174720 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-58
Identity = 104/179 (58.10%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERP----TATKVASMFVGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Csor.00g174720 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-58
Identity = 104/179 (58.10%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   YHK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERP----TATKVASMFVGTKDKCLGCKNT 120
           HF+QLFK +GS +K+F+       P K AD   P    T ++VA  F GT++KC  C  T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V   +YHKSCFKC HGGC ISPSNY A EG LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of Csor.00g174720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	6.1e-94	87.57	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	2.6e-76	72.00	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	6.4e-59	60.00	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.6e-57	58.10	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O80839	1.9e-55	54.86	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]

BLAST of Csor.00g174720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591426.1	3.96e-136	100.00	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023536448.1	2.12e-135	100.00	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936105.1	2.29e-135	99.44	LIM domain-containing protein WLIM1 [Cucurbita moschata]	[more]
XP_022977103.1	3.39e-134	99.44	LIM domain-containing protein WLIM1-like [Cucurbita maxima]	[more]
XP_038900157.1	1.09e-133	97.77	LIM domain-containing protein WLIM1 [Benincasa hispida]	[more]

BLAST of Csor.00g174720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCP1	1.11e-135	99.44	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]
A0A6J1IP16	1.64e-134	99.44	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3T9	6.18e-133	97.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]
A0A5A7VG01	8.77e-133	96.65	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BUC8	8.77e-133	96.65	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4...	[more]

BLAST of Csor.00g174720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	4.3e-95	87.57	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	4.5e-60	60.00	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	1.1e-58	58.10	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.1e-58	58.10	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.1e-58	58.10	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 109..161 e-value: 3.7E-12 score: 56.4 coord: 9..61 e-value: 4.6E-11 score: 52.8
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..64 e-value: 1.9E-10 score: 40.8 coord: 110..164 e-value: 2.0E-11 score: 43.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.206699
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.4345
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 1.8E-19 score: 71.7 coord: 104..174 e-value: 1.2E-18 score: 69.1
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..179
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..179
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.08367E-39 score: 127.581
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 1.07779E-36 score: 119.883
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g174720.m01	Csor.00g174720.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding