Csor.00g174660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g174660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr09: 1222411 .. 1223611 (-)
RNA-Seq Expression	Csor.00g174660
Synteny	Csor.00g174660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGTTATGGTTCTGTCCCCACCTGAACTTGCAGTAGTCAAATTCCGAGGGTTTGACTGGCCTGCGCCTGCACCCTGCACCCTGCAGATCGGTCGGTCTCTTATTTCTTGCCGATCCAAGCGGGAAGTGTGCAGCACATGGGGGGCAGTGAATTGGCATCAAATGGGTATTTTTGATAAAAACAAGTGGTCTATGACAAGCAGATGACACAATATAAGCAACCACAAGGGGCAGGAGGATAAAGAGGATGTGTGTATTCAAACATACCTTGCCCATTCCTCTCCATGCTTTAATGATCAATCATGGATTCATAACACACATAGCCCTTTCTTTTTCTCTTGGTTTCCTCTTGGATGTCAGTCTCCAACCAAATTTGGATTGCTTCTGTCAATATTTCAGGGGGCAGTTTGGATTTTGATTTGAAAATGACATGAGTTCGAGGGAAATGGAAAATGAAAACCTCTATTGGGAATTTTGTTGCAGGTGATCTCTTCTATGCTCTACTTTTAACGAATCTGTGCTTTTCATCAACCACGCATCCTATATTTAGCTATCTTTTGAAAACTAAAGTTCTATATTTGCTATCCACAATGATTAATGACATGGGGTGGCTTCCAATCTAACTGATTAATATAAAATATCACAAAATATGAAAGCCAGAAGAGGATAGCGAATGAATCAAATGGTAGGGCATATGTTAGCAGTCAGAGAGTAATGTATCACTATCTAATCTAACTTAATCAGTAAACTGTTATAATTATAATGTATGAACATATAGATCCATGAATGAATATGACAAGAAGTAAAAACGTATAGTTCTAACTGAAATTATATACCGTCAATCAATGGCCAATAGGTTTAGATACCCGAAGTGCAATGGCATATAGAGAATCTCTTGGAGAGCGAAGAAGTTGAAACAAAGAGGCGAGTGGGGCACGAACTGAAGCCGTCGAATCGCGGTTTTTCAGATCCGGGATCAATCGGAGCATGGGACAAGAACTCGAAGCGATTCGAGGTTCGTTTTAAGCGATTGTCGCTGTCGGAACAGGGGAATCGTGCGAGCGCGGGTCGCTGCAGCAGTCACCCGCCGAAGCCGGGTAATTCTGAAACGCTGCAGATTGCCGCAACCAAATATCTGAGGCGAACTCTTCTGGGCCCAATTCTGAAACGAACAGTCAGCAATAGGCCCAATTAA

mRNA sequence

ATGGTTATGGTTATGGTTCTGTCCCCACCTGAACTTGCAGTAGTCAAATTCCGAGGGTTTGACTGGCCTGCGCCTGCACCCTGCACCCTGCAGATCGGTCGGTCTCTTATTTCTTGCCGATCCAAGCGGGAAGTGTGCAGCACATGGGGGGCAGTGAATTGGCATCAAATGGAGAATCTCTTGGAGAGCGAAGAAGTTGAAACAAAGAGGCGAGTGGGGCACGAACTGAAGCCGTCGAATCGCGGTTTTTCAGATCCGGGATCAATCGGAGCATGGGACAAGAACTCGAAGCGATTCGAGGTTCGTTTTAAGCGATTGTCGCTGTCGGAACAGGGGAATCGTGCGAGCGCGGGTCGCTGCAGCAGTCACCCGCCGAAGCCGGGTAATTCTGAAACGCTGCAGATTGCCGCAACCAAATATCTGAGGCGAACTCTTCTGGGCCCAATTCTGAAACGAACAGTCAGCAATAGGCCCAATTAA

Coding sequence (CDS)

ATGGTTATGGTTATGGTTCTGTCCCCACCTGAACTTGCAGTAGTCAAATTCCGAGGGTTTGACTGGCCTGCGCCTGCACCCTGCACCCTGCAGATCGGTCGGTCTCTTATTTCTTGCCGATCCAAGCGGGAAGTGTGCAGCACATGGGGGGCAGTGAATTGGCATCAAATGGAGAATCTCTTGGAGAGCGAAGAAGTTGAAACAAAGAGGCGAGTGGGGCACGAACTGAAGCCGTCGAATCGCGGTTTTTCAGATCCGGGATCAATCGGAGCATGGGACAAGAACTCGAAGCGATTCGAGGTTCGTTTTAAGCGATTGTCGCTGTCGGAACAGGGGAATCGTGCGAGCGCGGGTCGCTGCAGCAGTCACCCGCCGAAGCCGGGTAATTCTGAAACGCTGCAGATTGCCGCAACCAAATATCTGAGGCGAACTCTTCTGGGCCCAATTCTGAAACGAACAGTCAGCAATAGGCCCAATTAA

Protein sequence

MVMVMVLSPPELAVVKFRGFDWPAPAPCTLQIGRSLISCRSKREVCSTWGAVNWHQMENLLESEEVETKRRVGHELKPSNRGFSDPGSIGAWDKNSKRFEVRFKRLSLSEQGNRASAGRCSSHPPKPGNSETLQIAATKYLRRTLLGPILKRTVSNRPN

Homology

[Close]

BLAST of Csor.00g174660 vs. NCBI nr
Match: KAG6591420.1 (hypothetical protein SDJN03_13766, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329 bits (843), Expect = 9.27e-114
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MVMVMVLSPPELAVVKFRGFDWPAPAPCTLQIGRSLISCRSKREVCSTWGAVNWHQMENL 60
           MVMVMVLSPPELAVVKFRGFDWPAPAPCTLQIGRSLISCRSKREVCSTWGAVNWHQMENL
Sbjct: 1   MVMVMVLSPPELAVVKFRGFDWPAPAPCTLQIGRSLISCRSKREVCSTWGAVNWHQMENL 60

Query: 61  LESEEVETKRRVGHELKPSNRGFSDPGSIGAWDKNSKRFEVRFKRLSLSEQGNRASAGRC 120
           LESEEVETKRRVGHELKPSNRGFSDPGSIGAWDKNSKRFEVRFKRLSLSEQGNRASAGRC
Sbjct: 61  LESEEVETKRRVGHELKPSNRGFSDPGSIGAWDKNSKRFEVRFKRLSLSEQGNRASAGRC 120

Query: 121 SSHPPKPGNSETLQIAATKYLRRTLLGPILKRTVSNRPN 159
           SSHPPKPGNSETLQIAATKYLRRTLLGPILKRTVSNRPN
Sbjct: 121 SSHPPKPGNSETLQIAATKYLRRTLLGPILKRTVSNRPN 159

The following BLAST results are available for this feature:

BLAST of Csor.00g174660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g174660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591420.1	9.27e-114	100.00	hypothetical protein SDJN03_13766, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g174660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g174660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g174660.m01	Csor.00g174660.m01	mRNA