Csor.00g174090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g174090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Precursor of CEP5
Location	Csor_Chr09: 955845 .. 956156 (-)
RNA-Seq Expression	Csor.00g174090
Synteny	Csor.00g174090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAATCAATTCCATCTGTATGGCCTTCCTCATTTTATCTTCCATTTGCAATATATCGCACACCCATGGAAGGCTGCTGCCGGTGGAGCATCCCATCGTCGGAAATCTTCACCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGTCGAGGCCACCGGCATTTCAACGCACTACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTTGGCCACTCTCTTGCACCAGCAAGCCACGTGGATTCGAAAATCCATTAG

mRNA sequence

ATGACTCTAATCAATTCCATCTGTATGGCCTTCCTCATTTTATCTTCCATTTGCAATATATCGCACACCCATGGAAGGCTGCTGCCGGTGGAGCATCCCATCGTCGGAAATCTTCACCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGTCGAGGCCACCGGCATTTCAACGCACTACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTTGGCCACTCTCTTGCACCAGCAAGCCACGTGGATTCGAAAATCCATTAG

Coding sequence (CDS)

ATGACTCTAATCAATTCCATCTGTATGGCCTTCCTCATTTTATCTTCCATTTGCAATATATCGCACACCCATGGAAGGCTGCTGCCGGTGGAGCATCCCATCGTCGGAAATCTTCACCGCAAAATCGTTGAAACTGCCGGTGTTGCTCCTCTCGGGTCGAGGCCACCGGCATTTCAACGCACTACCTCCTCTCCTGGCGACGGCGACGCCGAGGTGCTAGGCGGCGACTTCCGTCCGACCACCCCGGGCCACAGTCCTGGAGTTGGCCACTCTCTTGCACCAGCAAGCCACGTGGATTCGAAAATCCATTAG

Protein sequence

MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH

Homology

[Close]

BLAST of Csor.00g174090 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 34/92 (36.96%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 11  FLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETA---------GVAPLGSRPPAFQRT 70
           FL+L      +  HGR L V+  I G  +      A             +   PP     
Sbjct: 16  FLMLVFFLGFNCVHGRTLKVDDKINGGHYDSKTMMALAKHNDMMVDDKAMQFSPPPPPPP 75

Query: 71  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLA 94
            S  G  DAE    DFRPTTPGHSPG+GHSL+
Sbjct: 76  PSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

[Close]

BLAST of Csor.00g174090 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (532), Expect = 3.90e-68
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQR 60
           MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQR
Sbjct: 1   MTLINSICMAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQR 60

Query: 61  TTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
           TTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH
Sbjct: 61  TTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

[Close]

BLAST of Csor.00g174090 vs. NCBI nr
Match: KAG7024239.1 (Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (461), Expect = 2.20e-52
Identity = 88/90 (97.78%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 9  MAFLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSPGDG 68
          MAFLILSSICNISHTHGRLLPVEHPIVGN HRKIVETAGVAPLGSRPPAFQRTTSSPGDG
Sbjct: 1  MAFLILSSICNISHTHGRLLPVEHPIVGNHHRKIVETAGVAPLGSRPPAFQRTTSSPGDG 60

Query: 69 DAEVLGGDFRPTTPGHSPGVGHSLAPASHV 98
          DAEVLGGDFRPTTPGHSPGVGHSLAPASH+
Sbjct: 61 DAEVLGGDFRPTTPGHSPGVGHSLAPASHI 90

[Close]

BLAST of Csor.00g174090 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 2.63e-31
Identity = 65/98 (66.33%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEHPIVGN----LHRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  NISHT  RLLP+E+P + N    LHRK VET  VAPL S P AF   TS  
Sbjct: 14  AILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              D EVLGGDFRPTTPGHSPG GHS+AP SH+DSKIH
Sbjct: 74  ATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 3.05e-30
Identity = 64/98 (65.31%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEHPIVGNL----HRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  NISHT  RLLPVE+P + N+    HRK VET  VAPL S P AF   TS  
Sbjct: 14  AILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              D EVLGGDFRPTT GHSPG GHS+AP SH+DSKIH
Sbjct: 74  ATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 103 bits (258), Expect = 2.74e-26
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEH----PIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  ++SHT  R+ P ++     I  +LH KI ET  VAPL S P AF R T   
Sbjct: 14  AILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFT 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              +AEVLGGDFRPTTPGHSPG GHS+AP SH+DSKIH
Sbjct: 74  -TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.27e-31
Identity = 65/98 (66.33%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEHPIVGN----LHRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  NISHT  RLLP+E+P + N    LHRK VET  VAPL S P AF   TS  
Sbjct: 14  AILILSSTFNISHTQARLLPMENPDLVNIPEDLHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              D EVLGGDFRPTTPGHSPG GHS+AP SH+DSKIH
Sbjct: 74  ATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.48e-30
Identity = 64/98 (65.31%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEHPIVGNL----HRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  NISHT  RLLPVE+P + N+    HRK VET  VAPL S P AF   TS  
Sbjct: 14  AILILSSTFNISHTQARLLPVENPDLVNIPEDIHRKTVETVAVAPLKSGPLAFDHDTSF- 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              D EVLGGDFRPTT GHSPG GHS+AP SH+DSKIH
Sbjct: 74  ATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.32e-26
Identity = 58/98 (59.18%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 10  AFLILSSICNISHTHGRLLPVEH----PIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSP 69
           A LILSS  ++SHT  R+ P ++     I  +LH KI ET  VAPL S P AF R T   
Sbjct: 14  AILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFT 73

Query: 70  GDGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103
              +AEVLGGDFRPTTPGHSPG GHS+AP SH+DSKIH
Sbjct: 74  -TSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

[Close]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL
Match: A0A2U1PYP8 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA096640 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.17e-04
Identity = 29/83 (34.94%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 20 ISHTHGRLLPVEHPIVGNLHR---KIVETAGVAPLGSRPPAFQRTTSSPGDGDAEVLGGD 79
          I+ + GR L  E+     +H    K+ +T+  +  G               G   +  GD
Sbjct: 25 ITSSEGRSLSSENINGATIHHRNNKVTKTSAHSDHGQE------------SGSMVISEGD 84

Query: 80 FRPTTPGHSPGVGHSLAPASHVD 99
          FRPTTPGHSPGVGHS  P++ V+
Sbjct: 85 FRPTTPGHSPGVGHSTGPSATVN 95

[Close]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL
Match: A0A061FCV6 (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_033894 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.60e-04
Identity = 30/60 (50.00%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 37  NLHRKIVETAGVAPLGSRPPAFQRTTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLAPAS 96
           NL+R I+E   V             TSS G+G A     DFRPTTPGHSPG GHS  PAS
Sbjct: 55  NLNRDILEDGTV----------DVPTSSSGNGTA-FDANDFRPTTPGHSPGAGHSTGPAS 103

[Close]

BLAST of Csor.00g174090 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 34/92 (36.96%), Postives = 41/92 (44.57%), Query Frame = 0


Query: 11  FLILSSICNISHTHGRLLPVEHPIVGNLHRKIVETA---------GVAPLGSRPPAFQRT 70
           FL+L      +  HGR L V+  I G  +      A             +   PP     
Sbjct: 16  FLMLVFFLGFNCVHGRTLKVDDKINGGHYDSKTMMALAKHNDMMVDDKAMQFSPPPPPPP 75

Query: 71  TSSPGDGDAEVLGGDFRPTTPGHSPGVGHSLA 94
            S  G  DAE    DFRPTTPGHSPG+GHSL+
Sbjct: 76  PSQSGGKDAE----DFRPTTPGHSPGIGHSLS 103

[Close]

BLAST of Csor.00g174090 vs. TAIR 10
Match: AT3G50610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66816.1); Has 125 Blast hits to 60 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 10; Fungi - 4; Plants - 97; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0


Query: 58  FQRTTSSPGDGDAEVLGGDFRPTTPGHSPGVGHSL 93
           F  TT     G     G DF+PTTPGHSPGVGH++
Sbjct: 188 FAPTTPGNSPGMGHKKGDDFKPTTPGHSPGVGHAV 222

The following BLAST results are available for this feature:

BLAST of Csor.00g174090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q058G9	2.6e-04	36.96	Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1	[more]

BLAST of Csor.00g174090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591363.1	3.90e-68	100.00	Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024239.1	2.20e-52	97.78	Polyadenylate-binding protein RBP47C, partial [Cucurbita argyrosperma subsp. arg...	[more]
TYK20222.1	2.63e-31	66.33	hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa]	[more]
KAA0064365.1	3.05e-30	65.31	hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa]	[more]
KGN55172.1	2.74e-26	59.18	hypothetical protein Csa_012400 [Cucumis sativus]	[more]

BLAST of Csor.00g174090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9H8	1.27e-31	66.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEP2	1.48e-30	65.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L3I5	1.32e-26	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1	[more]
A0A2U1PYP8	2.17e-04	34.94	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA096640 PE=3 SV=1	[more]
A0A061FCV6	2.60e-04	50.00	Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_033894 PE=3 ...	[more]

BLAST of Csor.00g174090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66815.1	1.8e-05	36.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G50610.1	3.5e-04	54.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g174090.m01	Csor.00g174090.m01	mRNA