Csor.00g169300 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g169300
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 8330993 .. 8331465 (+)
RNA-Seq ExpressionCsor.00g169300
SyntenyCsor.00g169300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCATTCAGGCCGCAACCGGAAAGAGGCCATTGAAGGTGTCATTCATGCCACAACAGGAAAGAGGCCATGAAAGGTGTCATTCATGTCGCAACAGGAAAGAGGCCATGAAAGGTGTCATTCAGGCCGCAACCGGAAAGGGGCCATTCAGGCCGCAACCAGAAAAGGGCCATTCAAGCTGCAACCGGAAAAGGGCAATTCAGGCGCAACCGGAAAGGGGCCATTCAGTCCGCAATCGAAAAGGGGCCATTCAGGGCACAACAAAAAGGTGTCATTAAGGCCGCAACAAAAAAGGTTCCATTCAGGCCGCAACAGGAAAGGGGTCATTTAGGCTGCAACAGGAAAGGTGTCATTCAGGCCGCAACAGGAAAGGTTTCATTCAGGGCGCAACAGGAAAGGTTTTATTCAGGGCGCAACAGGAAAGTAGCCATGAAAGGTGCTATTCAGGCCACAACAGGAAAGAGGCTATGA

mRNA sequence

ATGGCCCATTCAGGCCGCAACCGGAAAGAGGCCATTGAAGGCCGCAACCAGAAAAGGGCCATTCAAGCTGCAACCGGAAAAGGGCAATTCAGGCGCAACCGGAAAGGGGCCATTCAGTCCGCAATCGAAAAGGGGCCATTCAGGGCACAACAAAAAGGTGTCATTAAGGCCGCAACAAAAAAGGTTCCATTCAGGCCGCAACAGGAAAGGGGTCATTTAGGCTGCAACAGGAAAGGTGTCATTCAGGCCGCAACAGGAAAGGTTTCATTCAGGGCGCAACAGGAAAGGTTTTATTCAGGGCGCAACAGGAAAGTAGCCATGAAAGGTGCTATTCAGGCCACAACAGGAAAGAGGCTATGA

Coding sequence (CDS)

ATGGCCCATTCAGGCCGCAACCGGAAAGAGGCCATTGAAGGCCGCAACCAGAAAAGGGCCATTCAAGCTGCAACCGGAAAAGGGCAATTCAGGCGCAACCGGAAAGGGGCCATTCAGTCCGCAATCGAAAAGGGGCCATTCAGGGCACAACAAAAAGGTGTCATTAAGGCCGCAACAAAAAAGGTTCCATTCAGGCCGCAACAGGAAAGGGGTCATTTAGGCTGCAACAGGAAAGGTGTCATTCAGGCCGCAACAGGAAAGGTTTCATTCAGGGCGCAACAGGAAAGGTTTTATTCAGGGCGCAACAGGAAAGTAGCCATGAAAGGTGCTATTCAGGCCACAACAGGAAAGAGGCTATGA

Protein sequence

MAHSGRNRKEAIEGRNQKRAIQAATGKGQFRRNRKGAIQSAIEKGPFRAQQKGVIKAATKKVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQATTGKRL
Homology
BLAST of Csor.00g169300 vs. NCBI nr
Match: KAG6573581.1 (hypothetical protein SDJN03_27468, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230 bits (586), Expect = 7.33e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MAHSGRNRKEAIEGRNQKRAIQAATGKGQFRRNRKGAIQSAIEKGPFRAQQKGVIKAATK 60
           MAHSGRNRKEAIEGRNQKRAIQAATGKGQFRRNRKGAIQSAIEKGPFRAQQKGVIKAATK
Sbjct: 1   MAHSGRNRKEAIEGRNQKRAIQAATGKGQFRRNRKGAIQSAIEKGPFRAQQKGVIKAATK 60

Query: 61  KVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQATTGKRL 119
           KVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQATTGKRL
Sbjct: 61  KVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQATTGKRL 119

BLAST of Csor.00g169300 vs. NCBI nr
Match: KAG6573582.1 (hypothetical protein SDJN03_27469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 1.94e-17
Identity = 56/104 (53.85%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 35  KGAIQSAIEKGPFRAQQKGVIKAATKKVPFRPQQERGHLG------------CN-----R 94
           KGAIQ+A E+G     +KGVI+AA  K   +PQQE+GH G            CN     R
Sbjct: 2   KGAIQAATERGHSGRNRKGVIQAAIGKGSIKPQQEKGHSGHKCHLGRKGHSSCNKKGRNR 61

Query: 95  KGVIQAATGKVSFRAQQE----RFYSGRNRKVAMKGAIQATTGK 117
           KG IQ ATGKV FRAQQE    R YSG NRK AMKG IQA TG+
Sbjct: 62  KGFIQGATGKVLFRAQQESSHERCYSGHNRKEAMKGTIQAATGR 105

BLAST of Csor.00g169300 vs. NCBI nr
Match: KAG6573583.1 (hypothetical protein SDJN03_27470, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 5.07e-14
Identity = 60/126 (47.62%), Postives = 71/126 (56.35%), Query Frame = 0

Query: 1   MAHSGRNRKEAIEGRNQKRAIQAATGK------GQFRRNRKGAIQSAIEKGPFRAQQKG- 60
           M  S + +K     + +  AIQAAT K      G   RN KGA   A  K  FR QQ+  
Sbjct: 1   MKESAKGKKRFRPQQERSEAIQAATRKRPQQERGHSCRNMKGA---ATGKKRFRPQQERS 60

Query: 61  -VIKAATKKVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQ 118
             IKAATKK   RPQ+ERGHLG NRK  IQ ATGK   R QQER +SGRNRK  ++ A +
Sbjct: 61  EAIKAATKK---RPQEERGHLGRNRKEAIQTATGK---RPQQERSHSGRNRKEVIQAARE 117

BLAST of Csor.00g169300 vs. NCBI nr
Match: XP_023521258.1 (uncharacterized protein LOC111785004, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.30e-12
Identity = 56/124 (45.16%), Postives = 62/124 (50.00%), Query Frame = 0

Query: 3   HSGRNRKEAIEGRNQKRAIQAATGKGQFR---------RNRKGAIQSAIEKGPFRAQQKG 62
           HSGR  KEAI+ R +        GKG FR         RNRKGA+ +   KG FR Q K 
Sbjct: 35  HSGRKPKEAIKERGR-------PGKGPFRLQPERSHLGRNRKGALPATTRKGQFRPQPK- 94

Query: 63  VIKAATKKVPFRPQQERGHLGCNRKGVIQAATGKVSFRAQQERFYSGRNRKVAMKGAIQA 117
             +    K PFRPQ ERGH GCNRKG            A QER + GRN     KGAI  
Sbjct: 95  --RGRPGKGPFRPQPERGHSGCNRKG------------AGQERGHPGRNG----KGAILV 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573581.17.33e-76100.00hypothetical protein SDJN03_27468, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573582.11.94e-1753.85hypothetical protein SDJN03_27469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573583.15.07e-1447.62hypothetical protein SDJN03_27470, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023521258.11.30e-1245.16uncharacterized protein LOC111785004, partial [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g169300.m01Csor.00g169300.m01mRNA