Csor.00g168500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g168500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	FAD_binding_3 domain-containing protein
Location	Csor_Chr18: 9212285 .. 9212970 (+)
RNA-Seq Expression	Csor.00g168500
Synteny	Csor.00g168500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTGAAGAACTACAACAGAAAGCAGGTTTCTTGCGTGACTGTTAATTGCTTGAACGTCGATGGCGATCTTCTGAGCTTATTCTCTGTTACAGCCATGGGGTTTTTAGGGTTTTTCAAGAGGTTTAATGGCCTCCAGAAATTTAATGCCTCACTTCGAGCAATACCACTTGGGTACGTTCAGAGCAGAGGCTTATCAAATTCCAAGCTTTTCCATGGCGGCGAAGAAACTGCGGTTCCGGTTTTAATTGTCGGTGCAGGACCTGTAGGCCTCGTCCTTGCTATTCTTCTCACGAAATTAGGTATTTCTAGTCCTTCTGTCCTTGATTTTCTCGATAATGAATGAAATTGGGATTCTTACAATGTTTACATTTTACTAATTTGTGTTTGCTCTGTTATTCTGTGAAAATAAAACGAGGATAAGTTCATTGGAAGTGGAAACGAAAGGAAAATTCAAGTTGGTATTAGAAATGCTATTATATAGATAGTTCTATAATAATTTTTATGCTAATTTCTTGTAGGGGTCAAGTGTGCAATTTTGGAGAAGAACACAAGTTTTTCTAATCATCCGCAAGCTCACTTCATAAATAACAGATCAATGGAGGTTGATTGAATTTCTAGTTATGAAGATGCCACTTGATGTATGAGTTAAAGATTCGAAGTAATGTGTTTATGCAGAATTGA

mRNA sequence

ATGTCGTTGAAGAACTACAACAGAAAGCAGGTTTCTTGCGTGACTGTTAATTGCTTGAACGTCGATGGCGATCTTCTGAGCTTATTCTCTGTTACAGCCATGGGGTTTTTAGGGTTTTTCAAGAGGTTTAATGGCCTCCAGAAATTTAATGCCTCACTTCGAGCAATACCACTTGGGTACGTTCAGAGCAGAGGCTTATCAAATTCCAAGCTTTTCCATGGCGGCGAAGAAACTGCGGTTCCGGTTTTAATTGTCGGTGCAGGACCTGTAGGCCTCGTCCTTGCTATTCTTCTCACGAAATTAGGGGTCAAGTGTGCAATTTTGGAGAAGAACACAAGTTTTTCTAATCATCCGCAAGCTCACTTCATAAATAACAGATCAATGGAGAATTGA

Coding sequence (CDS)

ATGTCGTTGAAGAACTACAACAGAAAGCAGGTTTCTTGCGTGACTGTTAATTGCTTGAACGTCGATGGCGATCTTCTGAGCTTATTCTCTGTTACAGCCATGGGGTTTTTAGGGTTTTTCAAGAGGTTTAATGGCCTCCAGAAATTTAATGCCTCACTTCGAGCAATACCACTTGGGTACGTTCAGAGCAGAGGCTTATCAAATTCCAAGCTTTTCCATGGCGGCGAAGAAACTGCGGTTCCGGTTTTAATTGTCGGTGCAGGACCTGTAGGCCTCGTCCTTGCTATTCTTCTCACGAAATTAGGGGTCAAGTGTGCAATTTTGGAGAAGAACACAAGTTTTTCTAATCATCCGCAAGCTCACTTCATAAATAACAGATCAATGGAGAATTGA

Protein sequence

MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSMEN

Homology

[Close]

BLAST of Csor.00g168500 vs. ExPASy Swiss-Prot
Match: Q5ATH0 (FAD-dependent monooxygenase apdD OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=apdD PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 82  VLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 130
           VLIVG GPVGL+ A  L K GV+  ILE+N + +  P+    N+RSME
Sbjct: 46  VLIVGGGPVGLITATTLAKYGVRSVILERNLTTTKWPKMDLTNSRSME 93

[Close]

BLAST of Csor.00g168500 vs. NCBI nr
Match: KAG6573660.1 (hypothetical protein SDJN03_27547, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (651), Expect = 2.02e-85
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60
           MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY
Sbjct: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60

Query: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120
           VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA
Sbjct: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120

Query: 121 HFINNRSMEN 130
           HFINNRSMEN
Sbjct: 121 HFINNRSMEN 130

[Close]

BLAST of Csor.00g168500 vs. NCBI nr
Match: KAG7012746.1 (hypothetical protein SDJN02_25499, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251 bits (641), Expect = 9.34e-77
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60
           MSLKNYNRKQVSCVTVNCLNVDGDLLSL SVTAMGFLGFFKRFNGLQKFNASLRAIPLGY
Sbjct: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLLSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60

Query: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120
           VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA
Sbjct: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120

Query: 121 HFINNRSME 129
           HFINNRSME
Sbjct: 121 HFINNRSME 129

[Close]

BLAST of Csor.00g168500 vs. NCBI nr
Match: XP_022945741.1 (uncharacterized protein LOC111449881 [Cucurbita moschata])

HSP 1 Score: 251 bits (641), Expect = 9.34e-77
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60
           MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVT MGFLGFFKRFNGLQKFNASLRAIPLGY
Sbjct: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTDMGFLGFFKRFNGLQKFNASLRAIPLGY 60

Query: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120
           VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA
Sbjct: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120

Query: 121 HFINNRSME 129
           HFINNRSME
Sbjct: 121 HFINNRSME 129

[Close]

BLAST of Csor.00g168500 vs. NCBI nr
Match: XP_022151935.1 (uncharacterized protein LOC111019789 [Momordica charantia])

HSP 1 Score: 189 bits (481), Expect = 1.20e-53
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 14  VTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFH 73
           +TV+  NVDGDLLSLFS+  MG LGF  RFNGL+KF+A LRA+PLG VQSRGLSNSK+FH
Sbjct: 1   MTVSFQNVDGDLLSLFSIRVMGLLGFVNRFNGLRKFDAKLRALPLGLVQSRGLSNSKIFH 60

Query: 74  GGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           GGE+T VPVLIVGAGPVGLVLAILLTKLGVKCA++EKN SFSNHPQAHFINNRSME
Sbjct: 61  GGEDTMVPVLIVGAGPVGLVLAILLTKLGVKCAVVEKNRSFSNHPQAHFINNRSME 116

[Close]

BLAST of Csor.00g168500 vs. NCBI nr
Match: XP_022966729.1 (uncharacterized protein LOC111466353 isoform X1 [Cucurbita maxima])

HSP 1 Score: 186 bits (472), Expect = 1.86e-52
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 34  MGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 93
           MGFLGFFKRFNGL++FNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV
Sbjct: 1   MGFLGFFKRFNGLRRFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 60

Query: 94  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME
Sbjct: 61  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 96

[Close]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL
Match: A0A6J1G1R0 (uncharacterized protein LOC111449881 OS=Cucurbita moschata OX=3662 GN=LOC111449881 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 4.52e-77
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGY 60
           MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVT MGFLGFFKRFNGLQKFNASLRAIPLGY
Sbjct: 1   MSLKNYNRKQVSCVTVNCLNVDGDLLSLFSVTDMGFLGFFKRFNGLQKFNASLRAIPLGY 60

Query: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120
           VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA
Sbjct: 61  VQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQA 120

Query: 121 HFINNRSME 129
           HFINNRSME
Sbjct: 121 HFINNRSME 129

[Close]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL
Match: A0A6J1DCK1 (uncharacterized protein LOC111019789 OS=Momordica charantia OX=3673 GN=LOC111019789 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 5.81e-54
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 14  VTVNCLNVDGDLLSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFH 73
           +TV+  NVDGDLLSLFS+  MG LGF  RFNGL+KF+A LRA+PLG VQSRGLSNSK+FH
Sbjct: 1   MTVSFQNVDGDLLSLFSIRVMGLLGFVNRFNGLRKFDAKLRALPLGLVQSRGLSNSKIFH 60

Query: 74  GGEETAVPVLIVGAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           GGE+T VPVLIVGAGPVGLVLAILLTKLGVKCA++EKN SFSNHPQAHFINNRSME
Sbjct: 61  GGEDTMVPVLIVGAGPVGLVLAILLTKLGVKCAVVEKNRSFSNHPQAHFINNRSME 116

[Close]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL
Match: A0A6J1HUM9 (uncharacterized protein LOC111466353 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466353 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 9.02e-53
Identity = 94/96 (97.92%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 34  MGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 93
           MGFLGFFKRFNGL++FNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV
Sbjct: 1   MGFLGFFKRFNGLRRFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 60

Query: 94  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME
Sbjct: 61  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 96

[Close]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL
Match: A0A1S3BZD5 (putative polyketide hydroxylase OS=Cucumis melo OX=3656 GN=LOC103495067 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.27e-47
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 26  LSLFSVTAMGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIV 85
           +SLF   AMGFLGFF+RFNGLQKF+A+ RAIPLGYVQ RG SNSKLFHGG+ET VPVLIV
Sbjct: 1   MSLFLNRAMGFLGFFRRFNGLQKFDATPRAIPLGYVQCRGSSNSKLFHGGDETMVPVLIV 60

Query: 86  GAGPVGLVLAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           GAGPVGLVLAILLTKLG+KCAI+EKN SFS HPQAHFINNR+ME
Sbjct: 61  GAGPVGLVLAILLTKLGIKCAIVEKNRSFSKHPQAHFINNRTME 104

[Close]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL
Match: A0A0A0KLD9 (FAD_binding_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G056620 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.01e-42
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 34  MGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 93
           MGFLGFFKRFNGLQKF+A LR  PL  +Q RG SNSK+FHGG+ET VPVLIVGAGPVGLV
Sbjct: 1   MGFLGFFKRFNGLQKFDAMLRTKPLRNIQCRGSSNSKIFHGGDETMVPVLIVGAGPVGLV 60

Query: 94  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 129
           LAILLTKLGVKCAI+EKN SFS HPQAHFINNR+ME
Sbjct: 61  LAILLTKLGVKCAIVEKNKSFSKHPQAHFINNRTME 96

[Close]

BLAST of Csor.00g168500 vs. TAIR 10
Match: AT1G24340.1 (FAD/NAD(P)-binding oxidoreductase family protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 34  MGFLGFFKRFNGLQKFNASLRAIPLGYVQSRGLSNSKLFHGGEETAVPVLIVGAGPVGLV 93
           M  LG  KR   +   N+ +R  P+ Y Q + LS++ LF+G +   +PVLIVGAGPVGLV
Sbjct: 1   MAILGLIKRVTRITVNNSRVRVYPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLV 60

Query: 94  LAILLTKLGVKCAILEKNTSFSNHPQAHFINNRSME 130
           L+ILLTKLGVKCA+++K TSFS HPQAHFINNRSME
Sbjct: 61  LSILLTKLGVKCAVVDKATSFSKHPQAHFINNRSME 96

The following BLAST results are available for this feature:

BLAST of Csor.00g168500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ATH0	6.6e-05	52.08	FAD-dependent monooxygenase apdD OS=Emericella nidulans (strain FGSC A4 / ATCC 3...	[more]

BLAST of Csor.00g168500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573660.1	2.02e-85	100.00	hypothetical protein SDJN03_27547, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012746.1	9.34e-77	99.22	hypothetical protein SDJN02_25499, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022945741.1	9.34e-77	99.22	uncharacterized protein LOC111449881 [Cucurbita moschata]	[more]
XP_022151935.1	1.20e-53	81.90	uncharacterized protein LOC111019789 [Momordica charantia]	[more]
XP_022966729.1	1.86e-52	97.92	uncharacterized protein LOC111466353 isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g168500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1R0	4.52e-77	99.22	uncharacterized protein LOC111449881 OS=Cucurbita moschata OX=3662 GN=LOC1114498...	[more]
A0A6J1DCK1	5.81e-54	81.90	uncharacterized protein LOC111019789 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1HUM9	9.02e-53	97.92	uncharacterized protein LOC111466353 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3BZD5	1.27e-47	83.65	putative polyketide hydroxylase OS=Cucumis melo OX=3656 GN=LOC103495067 PE=4 SV=...	[more]
A0A0A0KLD9	1.01e-42	83.33	FAD_binding_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G0566...	[more]

BLAST of Csor.00g168500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24340.1	1.4e-26	60.42	FAD/NAD(P)-binding oxidoreductase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 76..130 e-value: 4.5E-18 score: 67.5
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 81..129
IPR002938	FAD-binding domain	PFAM	PF01494	FAD_binding_3	coord: 80..129 e-value: 1.4E-15 score: 57.5
None	No IPR available	PANTHER	PTHR43004:SF6	FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN	coord: 80..129
None	No IPR available	PANTHER	PTHR43004	TRK SYSTEM POTASSIUM UPTAKE PROTEIN	coord: 80..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g168500.m01	Csor.00g168500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0102321	2,2'-hydroxybiphenyl monooxygenase activity
molecular_function	GO:0047544	2-hydroxybiphenyl 3-monooxygenase activity
molecular_function	GO:0071949	FAD binding