Csor.00g164890 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g164890
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein PLANT CADMIUM RESISTANCE 11
Location	Csor_Chr04: 7835115 .. 7835441 (+)
RNA-Seq Expression	Csor.00g164890
Synteny	Csor.00g164890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGCATCCATTTCAGCTATTCAAATTTGTGGATTATTCGCCGGAAAACGCTACTTTCTCTTCTCTACCGTCGGCACCGTCACAACCGCCGCCGCAGCCGCCGTGGCCCTCTTTTCCTACCAGTTTCAACCACCCCCACCTGGCGGCGCGGGCCAATTTTCCCCAAAACGCCACTCCCCACTCCCCAGTTGGTTGGTGGGTCCACCGGTCTCTGCTTAAGTTGAGGGGGACAGAGAGGGCTGGCAGTGATTGCTGCACCAATTGCTTGTGCGAAAAACTTGGAAATTTCCGGCAGGGACTTGGAGTGCAAATAAATTGGTAA

mRNA sequence

ATGTCAATGCATCCATTTCAGCTATTCAAATTTGTGGATTATTCGCCGGAAAACGCTACTTTCTCTTCTCTACCGTCGGCACCGTCACAACCGCCGCCGCAGCCGCCGTGGCCCTCTTTTCCTACCAGTTTCAACCACCCCCACCTGGCGGCGCGGGCCAATTTTCCCCAAAACGCCACTCCCCACTCCCCAGTTGGTTGGTGGGTCCACCGGTCTCTGCTTAAGTTGAGGGGGACAGAGAGGGCTGGCAGTGATTGCTGCACCAATTGCTTGTGCGAAAAACTTGGAAATTTCCGGCAGGGACTTGGAGTGCAAATAAATTGGTAA

Coding sequence (CDS)

ATGTCAATGCATCCATTTCAGCTATTCAAATTTGTGGATTATTCGCCGGAAAACGCTACTTTCTCTTCTCTACCGTCGGCACCGTCACAACCGCCGCCGCAGCCGCCGTGGCCCTCTTTTCCTACCAGTTTCAACCACCCCCACCTGGCGGCGCGGGCCAATTTTCCCCAAAACGCCACTCCCCACTCCCCAGTTGGTTGGTGGGTCCACCGGTCTCTGCTTAAGTTGAGGGGGACAGAGAGGGCTGGCAGTGATTGCTGCACCAATTGCTTGTGCGAAAAACTTGGAAATTTCCGGCAGGGACTTGGAGTGCAAATAAATTGGTAA

Protein sequence

MSMHPFQLFKFVDYSPENATFSSLPSAPSQPPPQPPWPSFPTSFNHPHLAARANFPQNATPHSPVGWWVHRSLLKLRGTERAGSDCCTNCLCEKLGNFRQGLGVQINW

Homology

[Close]

BLAST of Csor.00g164890 vs. NCBI nr
Match: KAG6601309.1 (hypothetical protein SDJN03_06542, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237 bits (604), Expect = 5.81e-79
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSMHPFQLFKFVDYSPENATFSSLPSAPSQPPPQPPWPSFPTSFNHPHLAARANFPQNAT 60
           MSMHPFQLFKFVDYSPENATFSSLPSAPSQPPPQPPWPSFPTSFNHPHLAARANFPQNAT
Sbjct: 1   MSMHPFQLFKFVDYSPENATFSSLPSAPSQPPPQPPWPSFPTSFNHPHLAARANFPQNAT 60

Query: 61  PHSPVGWWVHRSLLKLRGTERAGSDCCTNCLCEKLGNFRQGLGVQINW 108
           PHSPVGWWVHRSLLKLRGTERAGSDCCTNCLCEKLGNFRQGLGVQINW
Sbjct: 61  PHSPVGWWVHRSLLKLRGTERAGSDCCTNCLCEKLGNFRQGLGVQINW 108

[Close]

BLAST of Csor.00g164890 vs. NCBI nr
Match: XP_031742182.1 (protein PLANT CADMIUM RESISTANCE 11-like [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.75e-10
Identity = 43/86 (50.00%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 14 YSPENATFSSLPSAPSQPPPQPPWP-SFPTSFNHPHLAARANFPQNAT---PHSPVGWWV 73
          YS ++ATFSSLPSAP QPP  PP P SFP SF H  +A  ANFPQN     PHS VGW  
Sbjct: 4  YSHQDATFSSLPSAPLQPPSLPPSPTSFPVSFKHTLMATPANFPQNPCEPKPHSTVGWST 63

Query: 74 HRSLLKLRGTERAGSD---CCTNCLC 92
                  G     +D   CC  C C
Sbjct: 64 --------GLCHCCNDISICCLTCWC 81

[Close]

BLAST of Csor.00g164890 vs. NCBI nr
Match: XP_038891698.1 (protein PLANT CADMIUM RESISTANCE 2-like [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 2.85e-07
Identity = 41/88 (46.59%), Postives = 45/88 (51.14%), Query Frame = 0


Query: 12 VDY-SPENATFSSLPSAPSQPPPQPPWPSFPTSFNHPHLAARANFPQNAT---PHSPVGW 71
          +DY S E+A FSSLPSAP QPPP  P   F  SFN PH+AA AN P N     PHS V W
Sbjct: 1  MDYHSQEDAIFSSLPSAPPQPPP--PQAPFSASFNRPHMAAPANLPPNPCEPKPHSLVAW 60

Query: 72 WVHRSLLKLRGTERAGSD---CCTNCLC 92
                    G     +D   CC  C C
Sbjct: 61 ST--------GLCHCCNDISICCLTCWC 78

[Close]

BLAST of Csor.00g164890 vs. NCBI nr
Match: XP_022945783.1 (protein PLANT CADMIUM RESISTANCE 11 [Cucurbita moschata] >XP_022945784.1 protein PLANT CADMIUM RESISTANCE 11 [Cucurbita moschata] >XP_022945785.1 protein PLANT CADMIUM RESISTANCE 11 [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 4.13e-07
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 19 ATFSSLPSAPS-QPPPQPPWPSFPTSFNHPHLAARANFPQNAT---PHSPVGWWVHRSLL 78
          A FSSLPSAP   PPP PP PSF  +F+HPH+AA  ++P+N     PHS V W       
Sbjct: 8  ANFSSLPSAPPLPPPPPPPPPSFSANFSHPHMAAPVDYPRNPCEPQPHSTVAWSSG---- 67

Query: 79 KLRGTERAGSDCCTNCLC 92
           L       S CC  C C
Sbjct: 68 -LCDCCNDVSICCLTCWC 80

[Close]

BLAST of Csor.00g164890 vs. NCBI nr
Match: KAG6573983.1 (Protein PLANT CADMIUM RESISTANCE 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 8.03e-07
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 19 ATFSSLPSAPSQPPPQP-PWPSFPTSFNHPHLAARANFPQNAT---PHSPVGWWVHRSLL 78
          A FSSLPSAP  PPP P P PSF  +F+HPH+AA  ++P+N     PHS V W       
Sbjct: 8  ANFSSLPSAPPLPPPPPSPPPSFSANFSHPHMAAPVDYPRNPCEPQPHSTVAWSSG---- 67

Query: 79 KLRGTERAGSDCCTNCLC 92
           L       S CC  C C
Sbjct: 68 -LCDCCNDISICCLTCWC 80

[Close]

BLAST of Csor.00g164890 vs. ExPASy TrEMBL
Match: A0A6J1G1Y5 (protein PLANT CADMIUM RESISTANCE 11 OS=Cucurbita moschata OX=3662 GN=LOC111449929 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.00e-07
Identity = 36/78 (46.15%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 19 ATFSSLPSAPS-QPPPQPPWPSFPTSFNHPHLAARANFPQNAT---PHSPVGWWVHRSLL 78
          A FSSLPSAP   PPP PP PSF  +F+HPH+AA  ++P+N     PHS V W       
Sbjct: 8  ANFSSLPSAPPLPPPPPPPPPSFSANFSHPHMAAPVDYPRNPCEPQPHSTVAWSSG---- 67

Query: 79 KLRGTERAGSDCCTNCLC 92
           L       S CC  C C
Sbjct: 68 -LCDCCNDVSICCLTCWC 80

[Close]

BLAST of Csor.00g164890 vs. ExPASy TrEMBL
Match: A0A6J1HZT9 (protein PLANT CADMIUM RESISTANCE 11 OS=Cucurbita maxima OX=3661 GN=LOC111467717 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.49e-05
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 19 ATFSSLPSAPSQPPPQPPWP-SFPTSFNHPHLAARANFPQNAT---PHSPVGWWVHRSLL 78
          A FSSLP AP  PPP PP P SF  +F+HP++AA  ++P+N     PHS V W       
Sbjct: 8  ANFSSLPLAPPLPPPSPPPPPSFSANFSHPYMAAPVDYPRNPCQPQPHSTVAWSSG---- 67

Query: 79 KLRGTERAGSDCCTNCLC 92
           L       S CC  C C
Sbjct: 68 -LCDCCNDISICCLTCWC 80

The following BLAST results are available for this feature:

BLAST of Csor.00g164890 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g164890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601309.1	5.81e-79	100.00	hypothetical protein SDJN03_06542, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031742182.1	1.75e-10	50.00	protein PLANT CADMIUM RESISTANCE 11-like [Cucumis sativus]	[more]
XP_038891698.1	2.85e-07	46.59	protein PLANT CADMIUM RESISTANCE 2-like [Benincasa hispida]	[more]
XP_022945783.1	4.13e-07	46.15	protein PLANT CADMIUM RESISTANCE 11 [Cucurbita moschata] >XP_022945784.1 protein...	[more]
KAG6573983.1	8.03e-07	46.15	Protein PLANT CADMIUM RESISTANCE 2, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Csor.00g164890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Y5	2.00e-07	46.15	protein PLANT CADMIUM RESISTANCE 11 OS=Cucurbita moschata OX=3662 GN=LOC11144992...	[more]
A0A6J1HZT9	1.49e-05	43.59	protein PLANT CADMIUM RESISTANCE 11 OS=Cucurbita maxima OX=3661 GN=LOC111467717 ...	[more]

BLAST of Csor.00g164890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g164890.m01	Csor.00g164890.m01	mRNA