Csor.00g164340 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPQLS Homology
BLAST of Csor.00g164340 vs. NCBI nr
Match: KAG6601364.1 (hypothetical protein SDJN03_06597, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 177 bits (449), Expect = 6.05e-56 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Csor.00g164340 vs. NCBI nr
Match: KAG7032147.1 (hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 174 bits (442), Expect = 7.08e-55 Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_023513052.1 (transcription factor PAR2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 168 bits (426), Expect = 1.90e-52 Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_022957171.1 (transcription factor PAR2-like [Cucurbita moschata]) HSP 1 Score: 159 bits (403), Expect = 5.96e-49 Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_022977324.1 (uncharacterized protein LOC111477674 [Cucurbita maxima]) HSP 1 Score: 157 bits (397), Expect = 5.05e-48 Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1) HSP 1 Score: 159 bits (403), Expect = 2.88e-49 Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1) HSP 1 Score: 157 bits (397), Expect = 2.45e-48 Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1) HSP 1 Score: 145 bits (367), Expect = 1.01e-43 Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0
BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1) HSP 1 Score: 144 bits (363), Expect = 4.24e-43 Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 0
BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1) HSP 1 Score: 127 bits (320), Expect = 1.53e-36 Identity = 71/91 (78.02%), Postives = 74/91 (81.32%), Query Frame = 0
BLAST of Csor.00g164340 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 2.8e-10 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0
BLAST of Csor.00g164340 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07 Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0
BLAST of Csor.00g164340 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04 Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Csor.00g164340 vs. TAIR 10
Match: AT2G42870.1 (phy rapidly regulated 1 ) HSP 1 Score: 40.4 bits (93), Expect = 8.6e-04 Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|