Csor.00g164340 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g164340
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptiontranscription factor PAR1-like
LocationCsor_Chr04: 8108308 .. 8108574 (-)
RNA-Seq ExpressionCsor.00g164340
SyntenyCsor.00g164340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA

mRNA sequence

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA

Coding sequence (CDS)

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGACGGCAGCTCCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCACAACTTTCTTGA

Protein sequence

MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPQLS
Homology
BLAST of Csor.00g164340 vs. NCBI nr
Match: KAG6601364.1 (hypothetical protein SDJN03_06597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (449), Expect = 6.05e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVLQALSKIYDPQLS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88

BLAST of Csor.00g164340 vs. NCBI nr
Match: KAG7032147.1 (hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (442), Expect = 7.08e-55
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDETRGIAKVKWQRRGRRGGRHGGG GSSSVHMKLRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVLQALSKIYDPQLS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88

BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_023513052.1 (transcription factor PAR2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168 bits (426), Expect = 1.90e-52
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDETRGIAKVKWQRRGRRGGRHGGG GSS VHMKLRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSS-VHMKLRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVLQALSKIYDPQLS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 87

BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_022957171.1 (transcription factor PAR2-like [Cucurbita moschata])

HSP 1 Score: 159 bits (403), Expect = 5.96e-49
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDETRGIAKVKWQRRGRRGGRHGG    +SVHMKLRKLQR+IPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGG----ASVHMKLRKLQRIIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVL ALSKIYDPQLS
Sbjct: 61 KTADYIMQLRSQVHVLNALSKIYDPQLS 84

BLAST of Csor.00g164340 vs. NCBI nr
Match: XP_022977324.1 (uncharacterized protein LOC111477674 [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 5.05e-48
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDE +GIAKVKWQRRGRRGG HGG   SSSVHMK+RKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDEAKGIAKVKWQRRGRRGGLHGG---SSSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVLQALSKIYDP+LS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPRLS 85

BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 2.88e-49
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDETRGIAKVKWQRRGRRGGRHGG    +SVHMKLRKLQR+IPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGG----ASVHMKLRKLQRIIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVL ALSKIYDPQLS
Sbjct: 61 KTADYIMQLRSQVHVLNALSKIYDPQLS 84

BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.45e-48
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60
          MEYYNCDE +GIAKVKWQRRGRRGG HGG   SSSVHMK+RKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDEAKGIAKVKWQRRGRRGGLHGG---SSSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88
          KTADYIMQLRSQVHVLQALSKIYDP+LS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPRLS 85

BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.01e-43
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0

Query: 2  EYYNCDETRGIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFLK 61
          +YY+  E++GI KV+WQRRGRRGGRHGGG G S VHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGS-VHMKMRKLQRLIPGGRRLKPDRLFLK 62

Query: 62 TADYIMQLRSQVHVLQALSKIYDPQLS 88
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 TADYIMQLRSQVHVLQALSKIYDPTLS 88

BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 4.24e-43
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 0

Query: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGGDGSS-SVHMKLRKLQRLIPGGRRLKPDRLFLK 62
          YY+  E+ GI KV+WQRRGRRGGRHGGG G   SVHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQLRSQVHVLQALSKIYDPQLS 88
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90

BLAST of Csor.00g164340 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.53e-36
Identity = 71/91 (78.02%), Postives = 74/91 (81.32%), Query Frame = 0

Query: 1  MEYYNCDETR----GIAKVKWQRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPD 60
          MEYY    T     GI KVKWQRRGRRGGRHGGG    SV MK+RKLQRLIPGGR LKPD
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGG----SVQMKMRKLQRLIPGGRGLKPD 60

Query: 61 RLFLKTADYIMQLRSQVHVLQALSKIYDPQL 87
          RLFLKTADYIMQLRSQV+VLQALSKIY+P L
Sbjct: 61 RLFLKTADYIMQLRSQVNVLQALSKIYEPTL 87

BLAST of Csor.00g164340 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-10
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 18  QRRGRRGGRHGGGDGSSSVHMKLRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHVL 77
           ++R +   + G G GS S+ +K+RKL+ LIPGGRRL +PD L  KTADYIM L  ++  L
Sbjct: 48  EQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRFL 107

Query: 78  QALSKIY 84
           +A+S IY
Sbjct: 108 KAISDIY 114

BLAST of Csor.00g164340 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-07
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 27 HGGGDGSSSVHMKLRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY 84
          HG G  S  + MK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 27 HGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

BLAST of Csor.00g164340 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 27 HGGGDGSSSVHMKLRKLQRLIP-----GGRRLKPDRLFLKTADYIMQLRSQVHVLQALSK 85
          +G  DG  +V  KL  L+ L+P     GG   + + LF +TA+YI++LR+QV VL+ L +
Sbjct: 30 NGSSDGGKTVMEKLLALKSLLPPPVNVGGG--ETEELFQETAEYIVKLRTQVVVLKKLIE 89

BLAST of Csor.00g164340 vs. TAIR 10
Match: AT2G42870.1 (phy rapidly regulated 1 )

HSP 1 Score: 40.4 bits (93), Expect = 8.6e-04
Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 0

Query: 23  RGGRHGGGDGSSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALS 81
           R  R    +    V  K+  LQR+IPGG  L  D LF +TA YI+ L+ Q+  ++ L+
Sbjct: 46  REDREEAEEEEDEVKEKIEALQRIIPGGAALGVDALFEETAGYILSLQCQIKTIKVLT 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6601364.16.05e-56100.00hypothetical protein SDJN03_06597, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032147.17.08e-5598.86hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023513052.11.90e-5297.73transcription factor PAR2-like [Cucurbita pepo subsp. pepo][more]
XP_022957171.15.96e-4992.05transcription factor PAR2-like [Cucurbita moschata][more]
XP_022977324.15.05e-4890.91uncharacterized protein LOC111477674 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1GYH62.88e-4992.05transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=... [more]
A0A6J1IR242.45e-4890.91uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674... [more]
A0A0A0KQB41.01e-4385.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1[more]
A0A1S3BFE34.24e-4385.06uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=... [more]
A0A6J1DDZ51.53e-3678.02transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT1G23965.12.8e-1050.75unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G70270.11.7e-0746.55unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G29370.11.3e-0442.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G42870.18.6e-0437.93phy rapidly regulated 1 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..36
NoneNo IPR availablePANTHERPTHR33124:SF9TRANSCRIPTION FACTORcoord: 8..84
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 8..84
IPR044549Transcription factor IBH1-like, bHLH domainCDDcd11444bHLH_AtIBH1_likecoord: 33..79
e-value: 1.20467E-13
score: 57.6324

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g164340.m01Csor.00g164340.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated