Csor.00g161730 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g161730
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Auxin response factor
Location	Csor_Chr13: 7942166 .. 7942980 (+)
RNA-Seq Expression	Csor.00g161730
Synteny	Csor.00g161730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGGTGATACAAAATGAGTTTACATACTTGTTTACATGGCTATAATGTGGCCTTGTTAGTATATGCTGAATCCATCTGGCCACACATTTTATGTACAGGTTCACAAGTCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGTAAGTGTTGCTTGCCCCTTCTCCATAACTTCCATCATTAGTATTTGGTTTACTTGTTACTTTTAGTCAGTAATGTGGGGCATCTGTATGAACCATGAATTCTTTTATGCATATCAGGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGACGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA

mRNA sequence

ATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGACGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA

Coding sequence (CDS)

ATGCAGAATGGGGCGTCACACCTTAGGGGAGTCGGCAACGACAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACCATGACATCCTCAAATTGCATCGACGAGTCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCATCCACCCAATGGAACCTTTGTCAAGGTTCACAAGTCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTTGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAGCAGTGTGTGGTGTATCAAAATACTTTCACCAGACGAAGTTCATGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGTACCTGTGACGACTACGGTAGCCGACAGGACTCGAGAAATTTAGTTTCAGGGATAACCTCTGTCGGGCCTCTCGACTACTGA

Protein sequence

MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLVSGITSVGPLDY

Homology

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BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot
Match: Q9ZTX8 (Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2)

HSP 1 Score: 258.1 bits (658), Expect = 8.4e-68
Identity = 139/203 (68.47%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 1   MQNGASHLRGVG-NDSVSTTLPFSSNYMSTAGTDFSVNPTMTS-SNCIDESGFLQSHENV 60
           M NG S+LR +G     STTLPF+S   S    DFS N  MT+ S+CIDESGFLQS EN+
Sbjct: 732 MPNGMSNLRSIGIEGGDSTTLPFTS---SNFNNDFSGNLAMTTPSSCIDESGFLQSSENL 791

Query: 61  GQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLV 120
           G  N P + TFVKV+KSG++ RSLDI+KF+SY ELRSELA MFGLEG+LEDP+RSGWQLV
Sbjct: 792 GSEN-PQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLV 851

Query: 121 FVDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVP----IQRL-SN 180
           FVDRENDVLLLGD PWPEFVSSVWCIKILSP EV +MGKRGLELLNS P    + +L SN
Sbjct: 852 FVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSN 911

Query: 181 STCDDYGSRQDSRNLVSGITSVG 197
             CDD+G+R D RNL +GI SVG
Sbjct: 912 GNCDDFGNRSDPRNLGNGIASVG 930

[Close]

BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot
Match: Q653U3 (Auxin response factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF17 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 118/201 (58.71%), Postives = 156/201 (77.61%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFS-SNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVG 60
           MQ G   L+G   ++ ST +P+S SN++S +  DF ++ T++S++C+DESG++   +N  
Sbjct: 722 MQGGIPSLQG---ENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSD 781

Query: 61  QVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVF 120
           QV + P  TFVKV+KSGTY RSLDIT+F+SY ELR EL  +FGLEG+LE+PLRSGWQLVF
Sbjct: 782 QVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVF 841

Query: 121 VDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDY 180
           VDRE+DVLL+GD PW EFV+SV CIKILSP EV +MGK   ELL+S P +RL  S+CDDY
Sbjct: 842 VDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDY 901

Query: 181 GSRQDSRNLVSGITSVGPLDY 201
            SRQ+SR+L +GI SVG +++
Sbjct: 902 VSRQESRSLSTGIASVGSVEF 917

[Close]

BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot
Match: A2YG67 (Auxin response factor 17 OS=Oryza sativa subsp. indica OX=39946 GN=ARF17 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-58
Identity = 118/201 (58.71%), Postives = 155/201 (77.11%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFS-SNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVG 60
           MQ G   L+G   ++ ST +P+S SN++S    DF ++ T++S++C+DESG++   +N  
Sbjct: 722 MQGGIPSLQG---ENDSTAIPYSTSNFLSPLQNDFPLDQTLSSADCLDESGYVPCSQNSD 781

Query: 61  QVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVF 120
           QV + P  TFVKV+KSGTY RSLDIT+F+SY ELR EL  +FGLEG+LE+PLRSGWQLVF
Sbjct: 782 QVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVF 841

Query: 121 VDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDY 180
           VDRE+DVLL+GD PW EFV+SV CIKILSP EV +MGK   ELL+S P +RL  S+CDDY
Sbjct: 842 VDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGK-PFELLSSAPGKRL-GSSCDDY 901

Query: 181 GSRQDSRNLVSGITSVGPLDY 201
            SRQ+SR+L +GI SVG +++
Sbjct: 902 VSRQESRSLSTGIASVGSVEF 917

[Close]

BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot
Match: A2X1A1 (Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.7e-57
Identity = 115/201 (57.21%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFS-SNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVG 60
           MQ+G   L    N++ S+T+P+S SN++S +  D+ ++ T+T+  C+DESG++   +N  
Sbjct: 714 MQDGIPSLH---NENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNAD 773

Query: 61  QVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVF 120
           QV   P+ TFVKV+KSGT  R LDIT+F+SY ELRSE+  +FGLEG+LEDPLRSGWQLVF
Sbjct: 774 QVKR-PHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVF 833

Query: 121 VDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDY 180
           VDRE+DVLL+GD PW EFV+SV CIKILSP EV +MGK G+EL  S   +RL NS CD+Y
Sbjct: 834 VDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGNS-CDNY 893

Query: 181 GSRQDSRNLVSGITSVGPLDY 201
            SRQ+SR+L +GI SVG +++
Sbjct: 894 MSRQESRSLSTGIASVGSVEF 908

[Close]

BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot
Match: Q6H6V4 (Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.7e-57
Identity = 115/201 (57.21%), Postives = 153/201 (76.12%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFS-SNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVG 60
           MQ+G   L    N++ S+T+P+S SN++S +  D+ ++ T+T+  C+DESG++   +N  
Sbjct: 714 MQDGIPSLH---NENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNAD 773

Query: 61  QVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVF 120
           QV   P+ TFVKV+KSGT  R LDIT+F+SY ELRSE+  +FGLEG+LEDPLRSGWQLVF
Sbjct: 774 QVKR-PHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVF 833

Query: 121 VDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDY 180
           VDRE+DVLL+GD PW EFV+SV CIKILSP EV +MGK G+EL  S   +RL NS CD+Y
Sbjct: 834 VDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELF-STSARRLGNS-CDNY 893

Query: 181 GSRQDSRNLVSGITSVGPLDY 201
            SRQ+SR+L +GI SVG +++
Sbjct: 894 MSRQESRSLSTGIASVGSVEF 908

[Close]

BLAST of Csor.00g161730 vs. NCBI nr
Match: KAG6583873.1 (Auxin response factor 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410 bits (1054), Expect = 1.40e-144
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 181 SRQDSRNLVSGITSVGPLDY 200

[Close]

BLAST of Csor.00g161730 vs. NCBI nr
Match: XP_022927194.1 (auxin response factor 6-like [Cucurbita moschata])

HSP 1 Score: 409 bits (1050), Expect = 9.43e-135
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 684 MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 743

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 744 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 803

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVWCIKILSP+EVHEMGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 804 DRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 863

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 864 SRQDSRNLVSGITSVGPLDY 883

[Close]

BLAST of Csor.00g161730 vs. NCBI nr
Match: KAG7019493.1 (Auxin response factor 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409 bits (1050), Expect = 9.90e-135
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 686 MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 745

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 746 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 805

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVWCIKILSP+EVHEMGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 806 DRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 865

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 866 SRQDSRNLVSGITSVGPLDY 885

[Close]

BLAST of Csor.00g161730 vs. NCBI nr
Match: XP_023519078.1 (auxin response factor 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519079.1 auxin response factor 6-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023519080.1 auxin response factor 6-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407 bits (1046), Expect = 3.73e-134
Identity = 198/200 (99.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDS STTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 684 MQNGASHLRGVGNDSASTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 743

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 744 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 803

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVWCIKILSP+EVHEMGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 804 DRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 863

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 864 SRQDSRNLVSGITSVGPLDY 883

[Close]

BLAST of Csor.00g161730 vs. NCBI nr
Match: XP_023001392.1 (auxin response factor 6-like [Cucurbita maxima])

HSP 1 Score: 398 bits (1023), Expect = 1.01e-130
Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVS T PFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 684 MQNGASHLRGVGNDSVSATPPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 743

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 744 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 803

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVW IKILSP+EVHEMGKRGLE LNSVPIQRLSNSTCDDYG
Sbjct: 804 DRENDVLLLGDGPWPEFVSSVWYIKILSPEEVHEMGKRGLEFLNSVPIQRLSNSTCDDYG 863

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 864 SRQDSRNLVSGITSVGPLDY 883

[Close]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL
Match: A0A6J1EHB9 (Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111434114 PE=3 SV=1)

HSP 1 Score: 409 bits (1050), Expect = 4.57e-135
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 684 MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 743

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 744 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 803

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVWCIKILSP+EVHEMGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 804 DRENDVLLLGDGPWPEFVSSVWCIKILSPEEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 863

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 864 SRQDSRNLVSGITSVGPLDY 883

[Close]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL
Match: A0A6J1KGE4 (Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111495541 PE=3 SV=1)

HSP 1 Score: 398 bits (1023), Expect = 4.88e-131
Identity = 195/200 (97.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNGASHLRGVGNDSVS T PFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ
Sbjct: 684 MQNGASHLRGVGNDSVSATPPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 743

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV
Sbjct: 744 VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 803

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFVSSVW IKILSP+EVHEMGKRGLE LNSVPIQRLSNSTCDDYG
Sbjct: 804 DRENDVLLLGDGPWPEFVSSVWYIKILSPEEVHEMGKRGLEFLNSVPIQRLSNSTCDDYG 863

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNLVSGITSVGPLDY
Sbjct: 864 SRQDSRNLVSGITSVGPLDY 883

[Close]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL
Match: A0A5D3DB02 (Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001110 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 4.18e-123
Identity = 187/200 (93.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNG S+LRGVGNDSVSTTLPFSSNYMSTAG++FSVNPTMTSSNCIDESG LQSHENVGQ
Sbjct: 704 MQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGSNFSVNPTMTSSNCIDESGLLQSHENVGQ 763

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VN PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELA MFGLEGELEDPLRSGWQLVFV
Sbjct: 764 VN-PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFV 823

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFV+SVWCIKILSP+EV +MGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 824 DRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYG 883

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNL+SGI SVGPLDY
Sbjct: 884 SRQDSRNLISGIASVGPLDY 902

[Close]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL
Match: A0A1S3BAJ5 (Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103487981 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 4.18e-123
Identity = 187/200 (93.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNG S+LRGVGNDSVSTTLPFSSNYMSTAG++FSVNPTMTSSNCIDESG LQSHENVGQ
Sbjct: 704 MQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGSNFSVNPTMTSSNCIDESGLLQSHENVGQ 763

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VN PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELA MFGLEGELEDPLRSGWQLVFV
Sbjct: 764 VN-PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFV 823

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFV+SVWCIKILSP+EV +MGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 824 DRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYG 883

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNL+SGI SVGPLDY
Sbjct: 884 SRQDSRNLISGIASVGPLDY 902

[Close]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL
Match: Q6L8U0 (Auxin response factor OS=Cucumis sativus OX=3659 GN=CsARF4 PE=2 SV=1)

HSP 1 Score: 373 bits (958), Expect = 4.81e-122
Identity = 186/200 (93.00%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MQNGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQ 60
           MQNG S LRGV NDSVSTTLPFSSNYMSTAGT+F VNPTMTSSNCIDESG LQSHENVGQ
Sbjct: 618 MQNGMSTLRGVCNDSVSTTLPFSSNYMSTAGTNFPVNPTMTSSNCIDESGLLQSHENVGQ 677

Query: 61  VNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFV 120
           VN PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELA MFGLEGELEDPLRSGWQLVFV
Sbjct: 678 VN-PPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFV 737

Query: 121 DRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNSTCDDYG 180
           DRENDVLLLGDGPWPEFV+SVWCIKILSP+EV +MGKRGLELLNSVPIQRLSNSTCDDYG
Sbjct: 738 DRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYG 797

Query: 181 SRQDSRNLVSGITSVGPLDY 200
           SRQDSRNL+SGI SVGPLDY
Sbjct: 798 SRQDSRNLISGIASVGPLDY 816

[Close]

BLAST of Csor.00g161730 vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-69
Identity = 139/203 (68.47%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 1   MQNGASHLRGVG-NDSVSTTLPFSSNYMSTAGTDFSVNPTMTS-SNCIDESGFLQSHENV 60
           M NG S+LR +G     STTLPF+S   S    DFS N  MT+ S+CIDESGFLQS EN+
Sbjct: 730 MPNGMSNLRSIGIEGGDSTTLPFTS---SNFNNDFSGNLAMTTPSSCIDESGFLQSSENL 789

Query: 61  GQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLV 120
           G  N P + TFVKV+KSG++ RSLDI+KF+SY ELRSELA MFGLEG+LEDP+RSGWQLV
Sbjct: 790 GSEN-PQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLV 849

Query: 121 FVDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVP----IQRL-SN 180
           FVDRENDVLLLGD PWPEFVSSVWCIKILSP EV +MGKRGLELLNS P    + +L SN
Sbjct: 850 FVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSN 909

Query: 181 STCDDYGSRQDSRNLVSGITSVG 197
             CDD+G+R D RNL +GI SVG
Sbjct: 910 GNCDDFGNRSDPRNLGNGIASVG 928

[Close]

BLAST of Csor.00g161730 vs. TAIR 10
Match: AT1G30330.2 (auxin response factor 6 )

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-69
Identity = 139/203 (68.47%), Postives = 159/203 (78.33%), Query Frame = 0


Query: 1   MQNGASHLRGVG-NDSVSTTLPFSSNYMSTAGTDFSVNPTMTS-SNCIDESGFLQSHENV 60
           M NG S+LR +G     STTLPF+S   S    DFS N  MT+ S+CIDESGFLQS EN+
Sbjct: 732 MPNGMSNLRSIGIEGGDSTTLPFTS---SNFNNDFSGNLAMTTPSSCIDESGFLQSSENL 791

Query: 61  GQVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLV 120
           G  N P + TFVKV+KSG++ RSLDI+KF+SY ELRSELA MFGLEG+LEDP+RSGWQLV
Sbjct: 792 GSEN-PQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLV 851

Query: 121 FVDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVP----IQRL-SN 180
           FVDRENDVLLLGD PWPEFVSSVWCIKILSP EV +MGKRGLELLNS P    + +L SN
Sbjct: 852 FVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMGKRGLELLNSAPSSNNVDKLPSN 911

Query: 181 STCDDYGSRQDSRNLVSGITSVG 197
             CDD+G+R D RNL +GI SVG
Sbjct: 912 GNCDDFGNRSDPRNLGNGIASVG 930

[Close]

BLAST of Csor.00g161730 vs. TAIR 10
Match: AT5G37020.1 (auxin response factor 8 )

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 80/161 (49.69%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 8   LRGVGNDSVSTTLPFSSNYMSTAGTDFSVNP-TMTSS-------NCIDESGFLQSHENVG 67
           L GV  DS    LP +    +++  D   +P ++T S       +C+ ++     H   G
Sbjct: 639 LFGVDPDS-GLFLPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHELLH-GAG 698

Query: 68  QVNHP-PNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLV 127
           Q+N       FVKV+KSG+  RSLDI++F+SY ELR EL  MF +EG LEDPLRSGWQLV
Sbjct: 699 QINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLV 758

Query: 128 FVDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRG 160
           FVD+END+LLLGD PW  FV++VW IKILSP++VH+MG  G
Sbjct: 759 FVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHG 797

[Close]

BLAST of Csor.00g161730 vs. TAIR 10
Match: AT1G19850.1 (Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related )

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-30
Identity = 73/175 (41.71%), Postives = 99/175 (56.57%), Query Frame = 0


Query: 3   NGASHLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNC-IDESGFLQSHENVG-- 62
           N  S  + V +   S +   S  +      D S     +SSN   D+    Q+ +     
Sbjct: 726 NNTSFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKGSSWQ 785

Query: 63  QVNHPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVF 122
           ++  P   T+ KV K+G+  RS+D+T F  Y EL+S + CMFGLEG L  P  SGW+LV+
Sbjct: 786 KIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVY 845

Query: 123 VDRENDVLLLGDGPWPEFVSSVWCIKILSPDEVHEMGKRGLELLNSVPIQRLSNS 175
           VD E+DVLL+GD PW EFV  V CI+ILSP EV +M + G++LLNS  I  L  S
Sbjct: 846 VDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDLKTS 900

[Close]

BLAST of Csor.00g161730 vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-26
Identity = 52/92 (56.52%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 68   TFVKVHKSGTYSRSLDITKFNSYPELRSELACMFGLEGELEDPLRSGWQLVFVDRENDVL 127
            T+ KV K G+  RS+D+T+++ Y ELR +LA MFG+EG+LEDPL S W+LV+ D END+L
Sbjct: 959  TYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDIL 1018

Query: 128  LLGDGPWPEFVSSVWCIKILSPDEVHEMGKRG 160
            L+GD PW EFV+ V  IKILS  EV +M   G
Sbjct: 1019 LVGDDPWEEFVNCVQNIKILSSVEVQQMSLDG 1050

The following BLAST results are available for this feature:

BLAST of Csor.00g161730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZTX8	8.4e-68	68.47	Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2	[more]
Q653U3	1.2e-58	58.71	Auxin response factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF17 PE=2 ...	[more]
A2YG67	2.1e-58	58.71	Auxin response factor 17 OS=Oryza sativa subsp. indica OX=39946 GN=ARF17 PE=3 SV...	[more]
A2X1A1	8.7e-57	57.21	Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1	[more]
Q6H6V4	8.7e-57	57.21	Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV...	[more]

BLAST of Csor.00g161730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583873.1	1.40e-144	100.00	Auxin response factor 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927194.1	9.43e-135	99.50	auxin response factor 6-like [Cucurbita moschata]	[more]
KAG7019493.1	9.90e-135	99.50	Auxin response factor 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023519078.1	3.73e-134	99.00	auxin response factor 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235190...	[more]
XP_023001392.1	1.01e-130	97.50	auxin response factor 6-like [Cucurbita maxima]	[more]

BLAST of Csor.00g161730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHB9	4.57e-135	99.50	Auxin response factor OS=Cucurbita moschata OX=3662 GN=LOC111434114 PE=3 SV=1	[more]
A0A6J1KGE4	4.88e-131	97.50	Auxin response factor OS=Cucurbita maxima OX=3661 GN=LOC111495541 PE=3 SV=1	[more]
A0A5D3DB02	4.18e-123	93.50	Auxin response factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold48...	[more]
A0A1S3BAJ5	4.18e-123	93.50	Auxin response factor OS=Cucumis melo OX=3656 GN=LOC103487981 PE=3 SV=1	[more]
Q6L8U0	4.81e-122	93.00	Auxin response factor OS=Cucumis sativus OX=3659 GN=CsARF4 PE=2 SV=1	[more]

BLAST of Csor.00g161730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30330.1	6.0e-69	68.47	auxin response factor 6	[more]
AT1G30330.2	6.0e-69	68.47	auxin response factor 6	[more]
AT5G37020.1	1.1e-33	49.69	auxin response factor 8	[more]
AT1G19850.1	4.2e-30	41.71	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-relat...	[more]
AT1G19220.1	2.1e-26	56.52	auxin response factor 19	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 113..156 e-value: 7.0E-5 score: 22.8
None	No IPR available	GENE3D	3.10.20.90		coord: 65..156 e-value: 2.8E-27 score: 96.7
None	No IPR available	PANTHER	PTHR31384:SF115	AUXIN RESPONSE FACTOR 6	coord: 1..179
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 64..142
IPR044835	Auxin response factor	PANTHER	PTHR31384	AUXIN RESPONSE FACTOR 4-RELATED	coord: 1..179
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 67..151 score: 21.981287

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g161730.m01	Csor.00g161730.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding