Csor.00g161580 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g161580
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSmall nuclear ribonucleoprotein family protein
LocationCsor_Chr13: 8028615 .. 8033537 (+)
RNA-Seq ExpressionCsor.00g161580
SyntenyCsor.00g161580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCTTCCCCTGCAAACCAACCCGACCAAACATTGCAGCTGCCTCCTGGACGCCATTAACGAAAGGGGTTTTTTCAGAAAAGCTTGTAATCTCAAACAAATTTCCCTTCTGGGTTTCTCCTCACAGCATCCACAGAGCGAAATATCCAAACCCCAGATTCCAAACTAAGGCCTTTTATACGGCTACGCTATGTTTTTATGAAATGGAATCGAGTAGGTTAAACAAATCTCTAAAAAGCGATTGAAATAGGGAACCGTTTTTTCTTAAAATGAGTGTCCCATTAGCTCAACACCGTGAAATTTTGCTTGTTTTTACATCGCAGGCTGACATCCAACAAAAACGGACAACCTTGCCTGAAAAGAATTCGTGTTGTACACGCAGCCCGTGAAGCGGCACGGTATTCAAAGAATTCAGCTAAAAAATGTTAAATAAATTTCTAAACTTTAAAATTTAAACAACATTTTGGTTGAGCTTATTAGTAATTTAATTTTTGTGTTAATTAAATGTTGTTATTGGGAAACTAATGTGACACCTTTTGTTATATATATATATCTTTTTTCTCTCACCAAAATATTTTTAATATTAAATTTATATTTTCTTACAAAAATATATATAAGGTTAATTTCGACAAAAACTAAAACCATATCAAATTCAAATTTTAAAAACAAAAATATTGTTTTATATAAAATAAATTCTGATATATTAGATAAAAATAAAAATTATTTATTAAGATATAAAATTAGATGTTTTATTTATTTTATTTAATAAGATCAGATATAATTCTATAAATTTTTAATTAAAATTTATTAAATAGTTAGATAAAGATAAATTGGAAATTCAACAATTTATTAAAACATTTATTTAAAAAGAAAACTAAATATTAAAGATTTGTAGTTTTAACCCTTTATTTCTCCGGTCTCATCCGCGACAGGAAGCTTAGAATTACAATCGGCCGCCAAGATCGACTCTGTTCTGCCGACTCCCACCGTCTCTTTCTCTTCGTCCACTCCGGGTATGATTCTGGAGCTTTTATCTTATTGTTTTCCCTGTTTTAATGGCGGTAATCTTTCCTTAAATTTTAAACTCCACAATGGCGTCGCCGATGATGCTGATTCGTGGCTCTTTCCTCTGCGAAGTCCGTATTCTGGATGATTCTATTGGGTGTTATATTCGCTTTTCTTTCTAATTGTATTTGTTGTTTTATAAGCGAAGCAAAATGTTTTGAGTATTGTACTTACTCCATTTCGGTGGATCCTTCGAGCCTTCTAGGTAATTCAAAGTTCGGTTTCGTTTTTCCCTGCCTCGGATTATTGGGTTTCTGTTAGGTCTGAACATGAATTGGCTGACTGTTGGATTAGAAATTGTATCCTAATGCCATAACCAAAATGTTGTGATACCCAATTGTTCTAGTGGAATGCCACACCCAAAAATGCTTTGATACTCCATTGTTGTACCAAAAGCTCTGATACCATTTGTTGTGCAAAAAATGCAACCACACAGCTCTGATACCAATTGTTGTACCAATAACAGAAGTAAAATCGATGGTACTCACACACCCACTAACTGAAATTAAACAAAGGACAAAGATTTACGTAGTTCAGAGAGAAGAAATTCCCCTACATATACGAGTAGCAACCAATCTCAATAATCAAAGTGTTACAAAGTGTACATCTCACACTTTCACATTACAAAGTCTTTCAACAAATGTATCTTCCAAATGTCACTCAACAAATACAAAATGACACACAAGCTCCCATAAAAAACAATACTCTCGATCATCCTAGACAACCAAAATAAATAAGAATATTATTCAAAAGGGTTATAAACAGAATGGGAGTTAATAACTAAATTAAATGAGATCTATGACAATTTACAACAATCTCCACCTTGTCAGAAGCTCTCCAAGCAGATAACTGGTTTGGTTGTCACCAAGTCAAATTACTACTTCCAATTTTCTTGAATCTGCCTACCAAATCTCCAAACGATATCATATGATTTCCCTATGATTGATGGAGTTCCCACAGCTACAAAGATGCTATTCAGAGCTCGGATAGTTGCTATGAATCAGGAGAATCAAATCTTCAAACGATAGCATATGATTTCCCTATGATTGATGGAGTTCCCACAGCTACAAAGATGTTATTCAGAGCTCGGATAGTTTACACTGGCAAGTGGCTATGAACCAGGAGAACCAAATCCCCAAATGATAGCATATGATTTCCCTATGATTGATGGAGTTCCCACAGCTACAAAGATGCTATTCAGAGCTCAGATAGTTTACACTAGCAAGTGGCTATGAATCAGGAGAATAAGATAGAGTCATTGCAGATAAATCAGACTTGGGACTTAGTATATCTTCCAAAAGGTAGGAAGGAAATTGGTTGTCAAGTGGCTATGAATCAGGAGATAGAGTCATTGCAAATAAATCAGATTTGGGACTTAGTACATCTTCCAAAAGGTAGGAAGGAAATTGGTTGTAAATGGGTTTATGCAAAACAAGGAAGATTCTGGTATACGTTATAAGGCACGACTTGTGGCTAAAGTTTAGAAGGAAGATATTGATTACAATGAGATTTTCTCACCTGTGGTAAAATATTCTTCCATTCGAATTTTGTTGGCTTTGGTTGCTCAATTTAATCATGAGCTTGCACAACTTAATGTAAAAACTGCTTTTTTGCATGGAGATTTGGAAGAAGAAATATATATGGCACAACCAGTTGGTTTTTACATGGTTGGGCAACAACATTTGGTATGCAGATTGAAGAAATCTATGTATGTGCTGAAGCAATCTCCTCACCAATGGTATAAAAAGTTTGATCACTTCATGGTAGAGCATATGTATACTCATAGTCAATTTAATCATTGTGTGTATTATCGGTGCCTTGATGATGGATCGTTTACTAAGTCCCAAGTTTGATTTAACTGCAATGATTCTATCTCCTGATTCATAGCCACTTGCCAGTGTAAACTATCCGAGCTCTGAATAGCATCTTTGTAGCTATGGAACTCCATCAATCATAGGGAAAGCATATGCTATCGTTTGGAAATTTGGTAGGCAGTTTGAAGAAAATCTGATCAATGTTAGAAGGAAGAATGTTAGAAGGAAGAAGTAGTTTGTTGACTTGGTGGCAATTAAACCAGGCATCTGCTTGGGGATCTTTTGGTGGAGATTGTTGTAAATTGTCATAAATCTCATTTAATTTGGTTATTAACTCCCATTTAGTTTATAACCATTTTGATTAAATAAGAATATTAATTTGGTTATTAATCCTCATCGCTTGATGATTCATATTATCATTTTGACATGAATCATCCTTATATAAAAGGTTGTCTAGGGTGATTGTGGGTATTGTTTTTTATTGAGTTTGTGTGTCATTTGGGAAGAACTTTTGTTGAGAGACTTTGTAGTATGAGATATACACTTTGATTATTGAGATTGGTTGCTACCCGTGGATGTAGGGGAATTTCTCATCTCCAAACCATATAAATCTTTGTCTCTTTGTTTAATTTCAGTTGGTGGGTGTGTGAGTACAATCGATCTTACTTCTGCTATTGGTACAATACCTTAATTGAGACGGGAATTTGATATATTAACCTGGAGATGAGGGGTTTAAGTTTCTGTAGATGCTTACTTGGATTGAATATTGTGTAAGTGGACTTAGAGATGGTACAATGGATTAATCTCAGGCGCTTGACTTGTAACGTTTGCATGTAAAAGTGAGATTCGTTTGCGTTGATTCAAAACTAGATAATCGAAGGTTCTAGTGAATGTGTATTCTAATTCCTTAACCAGAATTGCTATGAAATCCTGCCATAACCATTTTAATTTTTGACCATTTCCTCTAGTTTAAAGGAATAATGTGCTTGGACTTTACCCTGTCCTTGTGGAATCACTCATGCCTTAAGAGTCACAACTTGCAATTAATCAGTCAAGTCAAGAGCTCTAGACCACTTGCCTCCTCCCTCTGTACCTGCTACAGGGCCTCCTGCAATATCATCTGTAATGATGATCTTGAGAGACATTCTTTTGAGTTTTGACAAAATTGTTAGTATTAGCTGTATGCTAGTCTCTTTGATCAATTTACAGACTCACCAGTATTGGTTTTGTGGGTTGAGATAACTAGAGTACTAAAGTGGGGTTATATCTCTTATATCATGATCTCTGGTAGAGTTATCATCATTTCCATCCATTACCTGTTGTTTGTATGCCCTTATATGTGGTGGAATGATAGTTGCTCTTATTGGGATTGTTCTTTTGGCAAATGCATTTCTCTACATAATTAGAATACAGCTTTTAAGAACATTGTTTGTTATAATGAAATTATGTGAATAAGACCTGATCTGTCCTGCCATTAGTTTTCCATTGATGGATTCTTTGTCTCTTGTGTTTAGCATTCGTTACTTTTATGGCTTTGATCTTTTCCTCATTTCACAAAATCCCAATCTCTTTCCGACAATTTTAACCCGTTTTTTCACTCAGATTACAGTGACTTTAGTTGCAATTCTGATTATATAATTGGGCCTGTTCATCAACTACAACTACCTTTCCACTTATAGGGACCAATTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAAGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

mRNA sequence

ATGGCCTCCTTCCCCTGCAAACCAACCCGACCAAACATTGCAGCTGCCTCCTGGACGCCATTAACGAAAGGGGTTTTTTCAGAAAAGCTTAATTACAATCGGCCGCCAAGATCGACTCTGTTCTGCCGACTCCCACCGTCTCTTTCTCTTCGTCCACTCCGGGGACCAATTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Coding sequence (CDS)

ATGGCCTCCTTCCCCTGCAAACCAACCCGACCAAACATTGCAGCTGCCTCCTGGACGCCATTAACGAAAGGGGTTTTTTCAGAAAAGCTTAATTACAATCGGCCGCCAAGATCGACTCTGTTCTGCCGACTCCCACCGTCTCTTTCTCTTCGTCCACTCCGGGGACCAATTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Protein sequence

MASFPCKPTRPNIAAASWTPLTKGVFSEKLNYNRPPRSTLFCRLPPSLSLRPLRGPIEVTIDGTRIRRIHGSGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Homology
[Close]
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.6e-05
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0 

Query: 74  IKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHV 133
           I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V
Sbjct: 22  IQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILIRGETVVSMSV 81

Query: 134 DSTIDEQLAL 143
           ++   E+  L
Sbjct: 82  EAPPPEEAKL 91

[Close]
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match: Q17QN3 (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 74  IKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSC 133
           ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS 
Sbjct: 21  LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80

[Close]
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match: P63162 (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 74  IKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSC 133
           ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS 
Sbjct: 21  LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80

[Close]
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match: Q60HD3 (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 74  IKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSC 133
           ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS 
Sbjct: 21  LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80

[Close]
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match: P63163 (Small nuclear ribonucleoprotein-associated protein N OS=Mus musculus OX=10090 GN=Snrpn PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 74  IKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSC 133
           ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS 
Sbjct: 21  LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80

[Close]
BLAST of Csor.00g161580 vs. NCBI nr
Match: KAG6583888.1 (hypothetical protein SDJN03_19820, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300 bits (769), Expect = 6.23e-103
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MASFPCKPTRPNIAAASWTPLTKGVFSEKLNYNRPPRSTLFCRLPPSLSLRPLRGPIEVT 60
           MASFPCKPTRPNIAAASWTPLTKGVFSEKLNYNRPPRSTLFCRLPPSLSLRPLRGPIEVT
Sbjct: 1   MASFPCKPTRPNIAAASWTPLTKGVFSEKLNYNRPPRSTLFCRLPPSLSLRPLRGPIEVT 60

Query: 61  IDGTRIRRIHGSGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 120
           IDGTRIRRIHGSGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI
Sbjct: 61  IDGTRIRRIHGSGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 120

Query: 121 LIPNSCRVSCHVDSTIDEQLALLSV 145
           LIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 121 LIPNSCRVSCHVDSTIDEQLALLSV 145

[Close]
BLAST of Csor.00g161580 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (383), Expect = 1.41e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 152 bits (383), Expect = 1.41e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 1.64e-43
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 149 bits (376), Expect = 1.64e-43
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 6.85e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 7.95e-44
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 7.95e-44
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 7.95e-44
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.13e-43
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLGSFYCMDKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHV
Sbjct: 40  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHV 99

Query: 133 DSTIDEQLALLSV 145
           DSTIDEQLALLSV
Sbjct: 100 DSTIDEQLALLSV 112

[Close]
BLAST of Csor.00g161580 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 73  GIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHV 132
           GIKDGRFFLG+F+C+DKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHV
Sbjct: 38  GIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHV 97

Query: 133 DSTIDEQLALLSV 146
           D +IDEQL+L+ +
Sbjct: 98  DCSIDEQLSLIQL 110

The following BLAST results are available for this feature:
BLAST of Csor.00g161580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q55A459.6e-0537.14Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum... [more]
Q17QN34.7e-0438.10Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN... [more]
P631624.7e-0438.10Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=... [more]
Q60HD34.7e-0438.10Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9... [more]
P631634.7e-0438.10Small nuclear ribonucleoprotein-associated protein N OS=Mus musculus OX=10090 GN... [more]
BLAST of Csor.00g161580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583888.16.23e-103100.00hypothetical protein SDJN03_19820, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023520042.11.41e-44100.00uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ... [more]
XP_022927243.11.41e-44100.00uncharacterized protein LOC111434149 [Cucurbita moschata][more]
XP_008444477.11.64e-4397.26PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Sma... [more]
XP_011649337.11.64e-4397.26uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ... [more]
BLAST of Csor.00g161580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EKG36.85e-45100.00uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341... [more]
A0A5D3DAS27.95e-4497.26Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma... [more]
A0A0A0LSZ57.95e-4497.26Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=... [more]
A0A1S3BAH47.95e-4497.26uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=... [more]
A0A6J1KMW61.13e-4398.63uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614... [more]
BLAST of Csor.00g161580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18372.11.4e-3079.45Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 64..137
e-value: 5.6E-14
score: 53.6
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 73..144
IPR034110LSM domain containing 1PANTHERPTHR10701:SF5FI06540Pcoord: 73..144
IPR034110LSM domain containing 1CDDcd06168LSMD1coord: 68..133
e-value: 2.02592E-21
score: 79.9085
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 74..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g161580.m01Csor.00g161580.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031417 NatC complex