Csor.00g160770 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g160770
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr13: 8489516 .. 8489815 (-)
RNA-Seq Expression	Csor.00g160770
Synteny	Csor.00g160770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCATCTGGGTTTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTACCTTAATCGGTCCAAAGAACTCAAAGTTCACAATCCCAATATCGCACATCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCTCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

mRNA sequence

ATGGCCCATCTGGGTTTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTACCTTAATCGGTCCAAAGAACTCAAAGTTCACAATCCCAATATCGCACATCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCTCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

Coding sequence (CDS)

ATGGCCCATCTGGGTTTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTACCTTAATCGGTCCAAAGAACTCAAAGTTCACAATCCCAATATCGCACATCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCTCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

Protein sequence

MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPISHITRIARFFAIPINPSQSSTKSNPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH

Homology

[Close]

BLAST of Csor.00g160770 vs. NCBI nr
Match: KAG6583968.1 (hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201 bits (510), Expect = 6.61e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPISHITRIARFFAIPINPSQSSTKS 60
          MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPISHITRIARFFAIPINPSQSSTKS
Sbjct: 1  MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPISHITRIARFFAIPINPSQSSTKS 60

Query: 61 NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 99
          NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH
Sbjct: 61 NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 99

[Close]

BLAST of Csor.00g160770 vs. NCBI nr
Match: PNY04332.1 (hypothetical protein L195_g000750 [Trifolium pratense])

HSP 1 Score: 46.6 bits (109), Expect = 7.93e-04
Identity = 33/104 (31.73%), Postives = 47/104 (45.19%), Query Frame = 0


Query: 1   MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPIS--HITRIARFFAIPINPSQSST 60
           MA L FC+   +LL+S S  + R L       F  P S  H     + +    +  +S  
Sbjct: 1   MARLSFCLCTLLLLLSFSVSETRPLRNRDPFSFHFPASSGHFIGTVKHYLYSGSKDRSLA 60

Query: 61  KSNPALT---RMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 99
           K    L    +++  IS   +   +   YKP R+SPGGPD HHH
Sbjct: 61  KIGKVLNTSAKVSFSISFRKSNATRNQYYKPLRVSPGGPDGHHH 104

[Close]

BLAST of Csor.00g160770 vs. ExPASy TrEMBL
Match: A0A2K3NMR5 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000750 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.84e-04
Identity = 33/104 (31.73%), Postives = 47/104 (45.19%), Query Frame = 0


Query: 1   MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPIS--HITRIARFFAIPINPSQSST 60
           MA L FC+   +LL+S S  + R L       F  P S  H     + +    +  +S  
Sbjct: 1   MARLSFCLCTLLLLLSFSVSETRPLRNRDPFSFHFPASSGHFIGTVKHYLYSGSKDRSLA 60

Query: 61  KSNPALT---RMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 99
           K    L    +++  IS   +   +   YKP R+SPGGPD HHH
Sbjct: 61  KIGKVLNTSAKVSFSISFRKSNATRNQYYKPLRVSPGGPDGHHH 104

The following BLAST results are available for this feature:

BLAST of Csor.00g160770 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g160770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583968.1	6.61e-65	100.00	hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PNY04332.1	7.93e-04	31.73	hypothetical protein L195_g000750 [Trifolium pratense]	[more]

BLAST of Csor.00g160770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3NMR5	3.84e-04	31.73	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g000750 PE=4 SV=1	[more]

BLAST of Csor.00g160770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g160770.m01	Csor.00g160770.m01	mRNA