Csor.00g157870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g157870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transmembrane protein, putative
Location	Csor_Chr08: 4910641 .. 4911257 (+)
RNA-Seq Expression	Csor.00g157870
Synteny	Csor.00g157870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTTTATGGTAAAATACTGCTGGGCACTTGCATTGAGTTTTAGTTATTTGTTGGGATAGAGTTGTATTTTTGTGTAACAACTCAAATCCACTGCTAGTGGATAGTGTCCTCTTTGGACTTTCCCTTTCGGGTTTCCCCTCAAGGTTTTTAAAACATGTTTGCTAGGGAGAGATTTCCACACCCTTATAAGGAATGCTTCATTCCCCTCTCCAACGGACATGGAATCTCACGTTTAATATTAGAGAGAGACTTCGTACAAACAATAATTGTTAATGTTGCAGAATATTTATATAAACTTGTACCTTTAGACTCAAAACTTTTGACGTCACCACGCTGTTTAATTCAGCATTACCATCCCTAAGATTTTCCCAACTGTGCAAACTGCAGATACCCAAAAGAAAAACATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

mRNA sequence

ATGCCTCTTTTATGCATTACCATCCCTAAGATTTTCCCAACTGTGCAAACTGCAGATACCCAAAAGAAAAACATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

Coding sequence (CDS)

ATGCCTCTTTTATGCATTACCATCCCTAAGATTTTCCCAACTGTGCAAACTGCAGATACCCAAAAGAAAAACATGGCAGTAAAACCAACTGTTGCGTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATTGCTGGTGCGATGAAAGCTGCAGGTGGTGCAAAGATAGGTGCAGCCACAGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGAGGATCAAAACAGGAGCAGAAGGATGATTCTAAACAACACTCTCCACAATGA

Protein sequence

MPLLCITIPKIFPTVQTADTQKKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKDDSKQHSPQ

Homology

[Close]

BLAST of Csor.00g157870 vs. NCBI nr
Match: KAG6593524.1 (hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 2.94e-49
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MPLLCITIPKIFPTVQTADTQKKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIG 60
          MPLLCITIPKIFPTVQTADTQKKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIG
Sbjct: 1  MPLLCITIPKIFPTVQTADTQKKNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIG 60

Query: 61 AATAAMTAAATAALAGGSKQEQKDDSKQHSPQ 92
          AATAAMTAAATAALAGGSKQEQKDDSKQHSPQ
Sbjct: 61 AATAAMTAAATAALAGGSKQEQKDDSKQHSPQ 92

[Close]

BLAST of Csor.00g157870 vs. NCBI nr
Match: KAG7025867.1 (hypothetical protein SDJN02_12365, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112 bits (280), Expect = 2.42e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 60

Query: 85 DSKQHSPQ 92
          DSKQHSPQ
Sbjct: 61 DSKQHSPQ 68

[Close]

BLAST of Csor.00g157870 vs. NCBI nr
Match: KAG7014012.1 (hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101 bits (252), Expect = 8.58e-25
Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 9   PKIFPTVQTADTQKK---NMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAA 68
           PKI  TVQTA+  K    NMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG K+GAATAA
Sbjct: 92  PKIV-TVQTAENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAA 151

Query: 69  MTAAATAALAGGSKQEQKDDSKQHSP 91
           MTAAATAALAG SKQ+QKDDSK H P
Sbjct: 152 MTAAATAALAG-SKQDQKDDSK-HPP 174

[Close]

BLAST of Csor.00g157870 vs. NCBI nr
Match: XP_038900241.1 (uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900242.1 uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900243.1 uncharacterized protein LOC120087330 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 2.07e-24
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALAG SKQ+QK+
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG-SKQDQKE 60

Query: 85 DSKQHSP 91
          DS +HSP
Sbjct: 61 DSNKHSP 66

[Close]

BLAST of Csor.00g157870 vs. NCBI nr
Match: KAE8646513.1 (hypothetical protein Csa_016818 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.66e-23
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALAG +KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG-TKQDQKD 60

Query: 85 DSKQHSP 91
          DSK HSP
Sbjct: 61 DSK-HSP 65

[Close]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.46e-24
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALAG +KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG-TKQDQKD 60

Query: 85 DSKQHSP 91
          DSK HSP
Sbjct: 61 DSK-HSP 65

[Close]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.71e-23
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGGAK+GAATAAMTAAATAALAG +KQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAG-TKQDQKD 60

Query: 85 DSKQHSP 91
          DSK HSP
Sbjct: 61 DSK-HSP 65

[Close]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.58e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG K+GAATAAMTAAATAALAG SKQ+QKD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAG-SKQDQKD 60

Query: 85 DSKQHSP 91
          DSK H P
Sbjct: 61 DSK-HPP 65

[Close]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.34e-23
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGGAK+GAATAAMTAAATAALAG SKQ+QKD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAG-SKQDQKD 60

Query: 85 DSKQHSP 91
          DSK H P
Sbjct: 61 DSK-HPP 65

[Close]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.34e-23
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGG K+GAATAAMTAAATAALAG SKQ+QKD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAG-SKQDQKD 60

Query: 85 DSKQHSP 91
          DSK H P
Sbjct: 61 DSK-HPP 65

[Close]

BLAST of Csor.00g157870 vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 25 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKIGAATAAMTAAATAALAGGSKQEQKD 84
          M+VKPTVALR +LVGG+A FAK+A AMKAAGG K+GAA  AMT AATAA++GGSKQ+QK 
Sbjct: 1  MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 85 DSKQHSP 92
          D+ +  P
Sbjct: 61 DASKAPP 67

The following BLAST results are available for this feature:

BLAST of Csor.00g157870 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g157870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593524.1	2.94e-49	100.00	hypothetical protein SDJN03_13000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025867.1	2.42e-30	100.00	hypothetical protein SDJN02_12365, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7014012.1	8.58e-25	81.40	hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038900241.1	2.07e-24	91.04	uncharacterized protein LOC120087330 [Benincasa hispida] >XP_038900242.1 unchara...	[more]
KAE8646513.1	1.66e-23	92.54	hypothetical protein Csa_016818 [Cucumis sativus]	[more]

BLAST of Csor.00g157870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXR8	8.46e-24	92.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB3	1.71e-23	91.04	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1JXL7	6.58e-23	91.04	uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760...	[more]
A0A6J1CPT9	9.34e-23	91.04	uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1GSG6	9.34e-23	89.55	uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]

BLAST of Csor.00g157870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13845.1	1.3e-15	68.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36755	PROTEIN, PUTATIVE-RELATED	coord: 14..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g157870.m01	Csor.00g157870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane