Csor.00g155300 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155300
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr09: 7229014 .. 7230339 (-)
RNA-Seq Expression	Csor.00g155300
Synteny	Csor.00g155300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalstop_codonterminal

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGTCGAAGATGCGCGTTTCCTCTGGGTGCGGATCGTGTATCCGTTAGGCTGTCACCTCCACTTGGTCCGAAAAAGCTGTGAGCTAGATCATCTAGCCGCGTGCACTAGACCAACGCTTTCAATCGGTCATATACAGAAGGTCGTGGGCTGGACAGTGGGCAGATTGAGTTTTTGGTTGTGAGTTGGGTTGGTATGTGCGCTGAAACCCGATCCGAACCGAAAACTCTTCTTCCTTACTCGAAAACCACGAAAATCCTAAATCGTACTCTACTGGTTTCGATGAAATACGCAACGATTTCGATGAAACCCAATGCCCTTACGTTCATTTAATATTATTATTACTTTTCAGAAACTCGTATCACTACAACTAGGCTCGTCGTCGTCATCTTCCTTTATAAGGAAGAAGACACGCAAGGTCATGGTCGTCGTTACCTGAAAATCCGTCTCTCCAGCTCATTGTAGAGCGTTTCTCCCCTCAATTTCTTCATAAAACTTGGAGATGGTATATCAAGAAAGAGTAAACACACTGAGATTTCTTATTGATTGGTAACCCTCTAGAGTCTCATCATAGTATTATCATAATTATGGGTCGGGAATAATAAATTAATACCAAAGACTAGTCTGTAGTATCTCTTTCATTTATATATCATATACAAAATTGCATAGAAAGTGACGAGTACATAACATGGTCATATTGCAAGGATTGTAGGAAAATTTCGGGCCATCAGGTCCTATTGTTCAGGCAACGACGTTCACCAATCAGTGGTCAGTTGATGACAATTTGTCACGTCGAAATATAAATATAATTTATTTTTTTTTTAGATATTAGATAAAATATTTCATTTTTCAAAATTGTCTTATTTAATGGATTTTAAAATAATTTTCTTTTAATTTAATTTGTATTTTCTTATTTCTGTGTACGCTGAGTCAGCATTTTAATTTTCTTTTATAAAAAAATTATTTTTATTTATTATTATCATTTTTTGTTTTTTTCTTTTAACCATTCTTTCCCAGATTCTGTTATTTTATCTAAACCCTATCTCTCCTTTAGCCGCTGCACCCGCGCCCCGCCGTTCGCCGTTCCTGCCCAGCACCGCCTCATCGACTGCCGCCACACGCTGCACTCTTAGCCGTCGCAATCTCAGTTGTCCCTCTCGGTGCATCCTCCTCCATCCGGCCGTGGCCGATTAGCTGCTGTCTATAACGCTGGCATCGTTTCTACACTTCTCATAATTGTCGGTTCTTTTCCCTCTCTCCCTCATTATATTTTCAGAGATTTGTCTTTTTTGTTACGAAAATGATCTTTAATTGTTGCAGTGA

mRNA sequence

ATGCGAAGTCGAAGATGCGCGTTTCCTCTGGGTGCGGATCGTGTATCCGTTAGGCTGTCACCTCCACTTGGTCCGAAAAAGCTGAAAATTTCGGGCCATCAGCCGTCGCAATCTCAGTTGTCCCTCTCGGTGCATCCTCCTCCATCCGGCCGTGGCCGATTAGCTGCTGTCTATAACGCTGGCATCGTTTCTACACTTCTCATAATTTGA

Coding sequence (CDS)

ATGCGAAGTCGAAGATGCGCGTTTCCTCTGGGTGCGGATCGTGTATCCGTTAGGCTGTCACCTCCACTTGGTCCGAAAAAGCTGAAAATTTCGGGCCATCAGCCGTCGCAATCTCAGTTGTCCCTCTCGGTGCATCCTCCTCCATCCGGCCGTGGCCGATTAGCTGCTGTCTATAACGCTGGCATCGTTTCTACACTTCTCATAATTTGA

Protein sequence

MRSRRCAFPLGADRVSVRLSPPLGPKKLKISGHQPSQSQLSLSVHPPPSGRGRLAAVYNAGIVSTLLII

Homology

[Close]

BLAST of Csor.00g155300 vs. NCBI nr
Match: KAG6592227.1 (hypothetical protein SDJN03_14573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (350), Expect = 2.01e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MRSRRCAFPLGADRVSVRLSPPLGPKKLKISGHQPSQSQLSLSVHPPPSGRGRLAAVYNA 60
          MRSRRCAFPLGADRVSVRLSPPLGPKKLKISGHQPSQSQLSLSVHPPPSGRGRLAAVYNA
Sbjct: 1  MRSRRCAFPLGADRVSVRLSPPLGPKKLKISGHQPSQSQLSLSVHPPPSGRGRLAAVYNA 60

Query: 61 GIVSTLLII 69
          GIVSTLLII
Sbjct: 61 GIVSTLLII 69

The following BLAST results are available for this feature:

BLAST of Csor.00g155300 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g155300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592227.1	2.01e-41	100.00	hypothetical protein SDJN03_14573, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g155300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g155300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g155300.m01	Csor.00g155300.m01	mRNA