Csor.00g150040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g150040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Xylan 1,4-beta-xylosidase
Location	Csor_Chr14: 4990617 .. 4991009 (-)
RNA-Seq Expression	Csor.00g150040
Synteny	Csor.00g150040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCGACGGGTAATGTCCGGTGGGCCGATCGACGTGTCGTTTGTGAAGGATCATCCACTTTCACTCACGAAATTCTCAATGCACCCAAACCCGTTACCGTCCCCATCGCCGGCTACCGGCGGCCCCATAACACCACCTATTTCTCCGGCGAGGCTACAAGAGTCACGCACACAAAATGCAACAGGCTATCACTTGTGATCCACGTGGCAGTCAGAAATACGGGCCGACATGAGGCCCAAGCCCAGAAAGAAGTCCAGATTAATATCCACGTGTGTGGACAGGTTTGGAAATAGAAGAGTTCCAACCGGGGAACATGGAATTCACATTGGTGACGTTAGGCATTCAGTGTCTCTACAAGCTCAGACATTGGGGATTATCAAATCTTGA

mRNA sequence

ATGGCGTCTCGACGGGTAATGTCCGGTGGGCCGATCGACGTGTCGTTTGTGAAGGATCATCCACTTTCACTCACGAAATTCTCAATGCACCCAAACCCGTTACCGTCCCCATCGCCGGCTACCGGCGGCCCCATAACACCACCTATTTCTCCGGCGAGGCTACAAGAGTCACGCACACAAAATGCAACAGGCTATCACTTGTTTGGAAATAGAAGAGTTCCAACCGGGGAACATGGAATTCACATTGGTGACGTTAGGCATTCAGTGTCTCTACAAGCTCAGACATTGGGGATTATCAAATCTTGA

Coding sequence (CDS)

ATGGCGTCTCGACGGGTAATGTCCGGTGGGCCGATCGACGTGTCGTTTGTGAAGGATCATCCACTTTCACTCACGAAATTCTCAATGCACCCAAACCCGTTACCGTCCCCATCGCCGGCTACCGGCGGCCCCATAACACCACCTATTTCTCCGGCGAGGCTACAAGAGTCACGCACACAAAATGCAACAGGCTATCACTTGTTTGGAAATAGAAGAGTTCCAACCGGGGAACATGGAATTCACATTGGTGACGTTAGGCATTCAGTGTCTCTACAAGCTCAGACATTGGGGATTATCAAATCTTGA

Protein sequence

MASRRVMSGGPIDVSFVKDHPLSLTKFSMHPNPLPSPSPATGGPITPPISPARLQESRTQNATGYHLFGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS

Homology

[Close]

BLAST of Csor.00g150040 vs. ExPASy Swiss-Prot
Match: Q94KD8 (Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-08
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 102
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 736 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 768

[Close]

BLAST of Csor.00g150040 vs. NCBI nr
Match: KAG6581292.1 (putative beta-D-xylosidase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205 bits (522), Expect = 1.13e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASRRVMSGGPIDVSFVKDHPLSLTKFSMHPNPLPSPSPATGGPITPPISPARLQESRTQ 60
           MASRRVMSGGPIDVSFVKDHPLSLTKFSMHPNPLPSPSPATGGPITPPISPARLQESRTQ
Sbjct: 1   MASRRVMSGGPIDVSFVKDHPLSLTKFSMHPNPLPSPSPATGGPITPPISPARLQESRTQ 60

Query: 61  NATGYHLFGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           NATGYHLFGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS
Sbjct: 61  NATGYHLFGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101

[Close]

BLAST of Csor.00g150040 vs. NCBI nr
Match: XP_023529122.1 (probable beta-D-xylosidase 2 [Cucurbita pepo subsp. pepo] >XP_023529123.1 probable beta-D-xylosidase 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 6.39e-12
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 68  FGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           FGNRRVP GEHGIHIGDVRHSVSLQA+TLGIIKS
Sbjct: 180 FGNRRVPMGEHGIHIGDVRHSVSLQAETLGIIKS 213

[Close]

BLAST of Csor.00g150040 vs. NCBI nr
Match: GFQ01574.1 (probable beta-d-xylosidase 2 [Phtheirospermum japonicum])

HSP 1 Score: 62.4 bits (150), Expect = 1.08e-08
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           G RR+P GEHG+H+GD+RHSVSLQAQTLG+IKS
Sbjct: 741 GIRRIPMGEHGLHVGDIRHSVSLQAQTLGVIKS 773

[Close]

BLAST of Csor.00g150040 vs. NCBI nr
Match: KAG8389552.1 (hypothetical protein BUALT_Bualt02G0241100 [Buddleja alternifolia])

HSP 1 Score: 61.2 bits (147), Expect = 2.75e-08
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           G RR+P GEH IHIGD+RHSVSLQAQTLG+IKS
Sbjct: 720 GVRRIPMGEHAIHIGDIRHSVSLQAQTLGVIKS 752

[Close]

BLAST of Csor.00g150040 vs. NCBI nr
Match: XP_010481135.1 (PREDICTED: probable beta-D-xylosidase 2 isoform X2 [Camelina sativa] >XP_019098330.1 PREDICTED: probable beta-D-xylosidase 2 isoform X1 [Camelina sativa])

HSP 1 Score: 60.8 bits (146), Expect = 3.76e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           GNRR+P G+HGIHIGD RH+VSLQA TLG+IKS
Sbjct: 737 GNRRIPIGDHGIHIGDERHTVSLQASTLGVIKS 769

[Close]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL
Match: A0A6I9TMX7 (probable beta-D-xylosidase 2 OS=Sesamum indicum OX=4182 GN=LOC105165196 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.40e-08
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 68  FGNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           FG RR+P GEHG+HIGD RH+VSL+AQT+G+I+S
Sbjct: 758 FGVRRIPMGEHGLHIGDARHAVSLEAQTIGVIRS 791

[Close]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL
Match: R0IR35 (Fn3_like domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10008371mg PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.16e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 593 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 625

[Close]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL
Match: D7KBA3 (Fn3_like domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_470222 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.18e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 731 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 763

[Close]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL
Match: A0A5S9S9P5 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS149 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.18e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 736 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 768

[Close]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL
Match: R0GUT8 (Fn3_like domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v10008371mg PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.18e-07
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 101
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 736 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 768

[Close]

BLAST of Csor.00g150040 vs. TAIR 10
Match: AT1G02640.1 (beta-xylosidase 2 )

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 69  GNRRVPTGEHGIHIGDVRHSVSLQAQTLGIIKS 102
           GNRR+P G+HGIHIGD  H+VSLQA TLG+IKS
Sbjct: 736 GNRRIPIGDHGIHIGDESHTVSLQASTLGVIKS 768

[Close]

BLAST of Csor.00g150040 vs. TAIR 10
Match: AT5G49360.1 (beta-xylosidase 1 )

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-04
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 68  FGNRRVPTGEHGIHIGDVRHSVSLQAQ 95
           +G RR+P GEH +HIGD++H++ +Q Q
Sbjct: 747 YGKRRIPMGEHKLHIGDLKHTILVQPQ 773

The following BLAST results are available for this feature:

BLAST of Csor.00g150040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KD8	4.9e-08	75.76	Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1	[more]

BLAST of Csor.00g150040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581292.1	1.13e-66	100.00	putative beta-D-xylosidase 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023529122.1	6.39e-12	94.12	probable beta-D-xylosidase 2 [Cucurbita pepo subsp. pepo] >XP_023529123.1 probab...	[more]
GFQ01574.1	1.08e-08	78.79	probable beta-d-xylosidase 2 [Phtheirospermum japonicum]	[more]
KAG8389552.1	2.75e-08	81.82	hypothetical protein BUALT_Bualt02G0241100 [Buddleja alternifolia]	[more]
XP_010481135.1	3.76e-08	78.79	PREDICTED: probable beta-D-xylosidase 2 isoform X2 [Camelina sativa] >XP_0190983...	[more]

BLAST of Csor.00g150040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6I9TMX7	3.40e-08	70.59	probable beta-D-xylosidase 2 OS=Sesamum indicum OX=4182 GN=LOC105165196 PE=3 SV=...	[more]
R0IR35	1.16e-07	75.76	Fn3_like domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v100083...	[more]
D7KBA3	1.18e-07	75.76	Fn3_like domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 ...	[more]
A0A5S9S9P5	1.18e-07	75.76	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
R0GUT8	1.18e-07	75.76	Fn3_like domain-containing protein OS=Capsella rubella OX=81985 GN=CARUB_v100083...	[more]

BLAST of Csor.00g150040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02640.1	3.5e-09	75.76	beta-xylosidase 2	[more]
AT5G49360.1	7.6e-04	51.85	beta-xylosidase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g150040.m01	Csor.00g150040.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045493	xylan catabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0009044	xylan 1,4-beta-xylosidase activity