Csor.00g144630 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g144630
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3
LocationCsor_Chr03: 9512264 .. 9513950 (-)
RNA-Seq ExpressionCsor.00g144630
SyntenyCsor.00g144630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCATCGCATTTTGAGGTAAATTTTCGATGAAACTTCTTTGGTATTTCGAATTTTGTTATGTGTCTGATGGATTTTTATCTTGAAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTTTCTCGTCGTAGCTACGGTTGGACTTCTGAAGGTACTTTCATGCTCTTATCGCCGGATTTTTCTATGTAAACATCTGTATTGCTTGTTCGTTCGTTTTTTTAATTGAGTTTTCCTCTTGTCCTGTTTAGCTTTAGCTTTGGGTTGGCGATTCTACCTTCTTTTAATGGCTAGGTTCTTATGGTTCCCTTATCCCTAATCCAAGGTGGTGGGGGGTGTTATATCTTAGGTGCATTCAAAATGTGGTTGAGCAGTAAATGTTCATTGAGAATTTGAAAGAACAATTTTGTTCGTGTGGCTGGAGAATTTTTAATTTTCATTTTCGTCAACCCATCTTTTACTCTCTTGCGCGATGAAAGAGTGCACATTGCTTTTCCTTTTGTAGGACAAGACGAGACTATTTGAGGTCTCAGCATGAACGGTGGAATGACTGGATTTATTTTTGTTGTCGACTTTTTGGAAATTGTGGTAAAATATTTCTCGAGTGGATTGTGTTTGAAAACCATTCTTTTGTGGTGAATCCGAGCTCAGAGATTCAACCTTTTGTTCCTATGACTTTATGGAGTTAGTGGTCAGATTGATGGCTGATGAAATTCCAAATAAATTATTGAATTCAGATCTTGTTATTTTGAATCTTTAAGTGGAAAATTTTATTTGTATTCTATTTGTCCATTGGATCCTTAGGGCTTAGACCAATATGATATTCTGGTTCCATGTTTATAGTCTAAGAATTAGAATTCACTTGCTATGTTTTATGCTTTTCTTCTCTCAATGCTCTATGGTCTAAGAATTAGAGCTCAATCTTGTTTATTTTATTGGGATCTTGAATTAATATTAGACCATATTTAGTAGTCAGCTTTGTGACGAAAGTCAGGTTACCTTTGAATTTTCTTTTTCGTTTTGTGTTCATTGATGGCATTAATTTTAGTAATATGACAAGGGTGATATTGATTTCTTTTACCACTCAGATTGCAATGATGATGTATGATGAATGTCGGATGGTTCGAGCACTTGCGCTCTAAAGACAAGATGCTGAAATAAAGTCATGTATTGCTAGTTTTTTCGTGTGCAAGTAGTTCAGTGATATTGGATTTATAGCTATAGGAAGAAACAAACTCATAACTGAGTTCACGTAGGTTGATATTCATGTTGGTGAGGCATAATTTTGTTATATTCACCATTCCTAATGACAGTTCACATCCTTGAGTTATCCTTGCTGTATAACTGTTCTTTCTCTTGAAACTTTGGGGACTTTACTTGAGTTCGTATCCTTCGAATGTTACTTTCTATAAAATGGTGTTATTACATCATTGTCACCCTGAAAAGTGAAACTTCTACATTTGCTTTTATGTTGTAGATTCTTGA

mRNA sequence

ATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCATCGCATTTTGAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTTTCTCGTCGTAGCTACGGTTGGACTTCTGAAGATTCTTGA

Coding sequence (CDS)

ATGTCCTCCGCCGCTGCCATGGCTGCTAGATCAGCCTTCAGATCAACCCTAGCCCGAGCCACTATCTCCCGCAGACTTACCAATGGTGCCAAAGTGAAATCACCCGCATCTCCGTTCAGCATCCCCAAGCAGAATCCACTCTCCCAGTCCCATCGCATTTTGAGATCTCCTGTTGAAATGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGCTTACGTCTATGCTTTCCGTTTCTCGTCGTAGCTACGGTTGGACTTCTGAAGATTCTTGA

Protein sequence

MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEMSCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS
Homology
[Close]
BLAST of Csor.00g144630 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 0 

Query: 2  SSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPF-SIPKQNPLSQSHRILRSPVEM 61
          +SA    ARS  R+  +R+  +      ++ KS    F +  +++PL      LR+PVE+
Sbjct: 3  TSAVLSGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSP---LRNPVEL 62

Query: 62 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSE 96
          S CVESLLPYHSATASAL+TS LS+S ++YGW S+
Sbjct: 63 SFCVESLLPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Csor.00g144630 vs. NCBI nr
Match: XP_022926144.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 [Cucurbita moschata] >XP_022926146.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 [Cucurbita moschata] >XP_022978786.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 [Cucurbita maxima] >XP_022978788.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 [Cucurbita maxima] >KAG6604464.1 Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (452), Expect = 4.04e-56
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97

[Close]
BLAST of Csor.00g144630 vs. NCBI nr
Match: XP_022926147.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 [Cucurbita moschata] >XP_022978789.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 [Cucurbita maxima])

HSP 1 Score: 177 bits (449), Expect = 1.16e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96

[Close]
BLAST of Csor.00g144630 vs. NCBI nr
Match: XP_022926143.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita moschata] >XP_022978784.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 177 bits (449), Expect = 1.31e-55
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96

[Close]
BLAST of Csor.00g144630 vs. NCBI nr
Match: XP_022926145.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 [Cucurbita moschata] >XP_022978787.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 [Cucurbita maxima])

HSP 1 Score: 176 bits (445), Expect = 4.73e-55
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSE S
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGS 97

[Close]
BLAST of Csor.00g144630 vs. NCBI nr
Match: XP_022978782.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 176 bits (445), Expect = 7.81e-55
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSE S
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEGS 97

[Close]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match: A0A6J1IUA2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.96e-56
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97

[Close]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match: A0A6J1EE22 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111433337 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 1.96e-56
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSEDS 97

[Close]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match: A0A6J1IV08 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.62e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96

[Close]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match: A0A6J1EDP6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 OS=Cucurbita moschata OX=3662 GN=LOC111433337 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 5.62e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96

[Close]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match: A0A6J1IV04 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478642 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 6.36e-56
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60
          MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM
Sbjct: 1  MSSAAAMAARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEM 60

Query: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96
          SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED
Sbjct: 61 SCCVESLLPYHSATASALLTSMLSVSRRSYGWTSED 96

[Close]
BLAST of Csor.00g144630 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEMSCCVESL 67
          AARS FRS + RA ++   +      S  S F +PKQ+PL  SHRI RSPVE+SCCVE++
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPL--SHRIFRSPVELSCCVETM 62

Query: 68 LPYHSATASALLTSMLSVSRRSYGWTSED 97
          LPYH+ATASALL SMLSVS RS  WT +D
Sbjct: 63 LPYHTATASALLNSMLSVSGRSI-WTFQD 88

[Close]
BLAST of Csor.00g144630 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.2e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISRRLTNGAKVKSPASPFSIPKQNPLSQSHRILRSPVEMSCCVESL 67
          AARS FRS + RA ++   +      S  S F +PKQ+PL  SHRI RSPVE+SCCVE++
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPL--SHRIFRSPVELSCCVETM 62

Query: 68 LPYHSATASALLTSMLSVSRRSYGWT 94
          LPYH+ATASALL SMLSVS RS  WT
Sbjct: 63 LPYHTATASALLNSMLSVSGRSI-WT 85

[Close]
BLAST of Csor.00g144630 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSHRILRSPVEMSCCV 67
          AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL  ++RI RSPVE+SCCV
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPL--TNRIFRSPVELSCCV 62

Query: 68 ESLLPYHSATASALLTSMLSVSRRSYGWTSED 97
          E++LPYH+ATASALL SMLSVSRR  GW  +D
Sbjct: 63 ETMLPYHTATASALLNSMLSVSRR--GWIVDD 90

[Close]
BLAST of Csor.00g144630 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSHRILRSPVEMSCCV 67
          AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL  ++RI RSPVE+SCCV
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPL--TNRIFRSPVELSCCV 62

Query: 68 ESLLPYHSATASALLTSMLSVSRRSYGWTSED 97
          E++LPYH+ATASALL SMLSVSRR  GW  +D
Sbjct: 63 ETMLPYHTATASALLNSMLSVSRR--GWIVDD 90

[Close]
BLAST of Csor.00g144630 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-16
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 0 

Query: 8  AARSAFRSTLARATISR-RLTNGAK--VKSPASPFSIPKQNPLSQSHRILRSPVEMSCCV 67
          AARS FRS  +RA+ +  R + G K    S  + F +PKQ+PL  ++RI RSPVE+SCCV
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPL--TNRIFRSPVELSCCV 62

Query: 68 ESLLPYHSATASALLTSMLSVSRRSYGW 93
          E++LPYH+ATASALL SMLSVSRR  GW
Sbjct: 63 ETMLPYHTATASALLNSMLSVSRR--GW 86

The following BLAST results are available for this feature:
BLAST of Csor.00g144630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ31.1e-0945.26Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Csor.00g144630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926144.14.04e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 ... [more]
XP_022926147.11.16e-55100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 ... [more]
XP_022926143.11.31e-55100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ... [more]
XP_022926145.14.73e-5598.97protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X5 ... [more]
XP_022978782.17.81e-5598.97protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
BLAST of Csor.00g144630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IUA21.96e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 ... [more]
A0A6J1EE221.96e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X4 ... [more]
A0A6J1IV085.62e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 ... [more]
A0A6J1EDP65.62e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X6 ... [more]
A0A6J1IV046.36e-56100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
BLAST of Csor.00g144630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33847.11.0e-1859.55unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.25.2e-1860.47unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT1G28395.41.3e-1657.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.51.3e-1657.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.23.7e-1659.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48
NoneNo IPR availablePANTHERPTHR33156:SF49SUBFAMILY NOT NAMEDcoord: 1..96
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g144630.m01Csor.00g144630.m01mRNA