Csor.00g142650 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g142650
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative
Location	Csor_Chr03: 7820618 .. 7821012 (+)
RNA-Seq Expression	Csor.00g142650
Synteny	Csor.00g142650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGAATTGCAGATTTCTGGTGTTTGTGGCTCTGTTCCTGCTTTGTTTTGCCTCAACCACTGTTACAGGTAAGGGAATGATTTCTTAAATACTTCAAACCCTGTTTTTATAGGAACAAAAAACAATCAAATATTAGTTCTTAGACACTAGAAAAGTCAAATATTAGTTATCAGGCACCTTTTCAAGTGAACCTTAAATAAGTAAAAACTGGGGGTGTGATGTTATCGTTTTGTAGGGAGAAGCATGAGAGTTGTATTTATGGAGGAAGGAGATGAAAGGCCTGAAGATCTATTAGTGCATACAAACAAGGACAAGAAGATGGAAGGCAGTGATCAGTTGGTGGTAATGGATTACACTCCTGCTTTAAAGAGGCCTCCAATCCACAACTGA

mRNA sequence

ATGGCTGTGAATTGCAGATTTCTGGTGTTTGTGGCTCTGTTCCTGCTTTGTTTTGCCTCAACCACTGTTACAGGGAGAAGCATGAGAGTTGTATTTATGGAGGAAGGAGATGAAAGGCCTGAAGATCTATTAGTGCATACAAACAAGGACAAGAAGATGGAAGGCAGTGATCAGTTGGTGGTAATGGATTACACTCCTGCTTTAAAGAGGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCTGTGAATTGCAGATTTCTGGTGTTTGTGGCTCTGTTCCTGCTTTGTTTTGCCTCAACCACTGTTACAGGGAGAAGCATGAGAGTTGTATTTATGGAGGAAGGAGATGAAAGGCCTGAAGATCTATTAGTGCATACAAACAAGGACAAGAAGATGGAAGGCAGTGATCAGTTGGTGGTAATGGATTACACTCCTGCTTTAAAGAGGCCTCCAATCCACAACTGA

Protein sequence

MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLVVMDYTPALKRPPIHN

Homology

[Close]

BLAST of Csor.00g142650 vs. NCBI nr
Match: KAG6604255.1 (hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (379), Expect = 1.15e-45
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLV 60
          MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLV
Sbjct: 1  MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLV 60

Query: 61 VMDYTPALKRPPIHN 75
          VMDYTPALKRPPIHN
Sbjct: 61 VMDYTPALKRPPIHN 75

[Close]

BLAST of Csor.00g142650 vs. NCBI nr
Match: KAB2597277.1 (hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 61.6 bits (148), Expect = 1.85e-10
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGD--ERPEDLLVHTNKDKKMEGSDQL 61
          A+ C+ LV VA FLLCF S T  GRS+ VV    GD  ++ ED      +D+    S+ L
Sbjct: 3  ALPCKNLVVVAFFLLCFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDE----SNDL 62

Query: 62 VVMDYTPALKRPPIHN 75
          + MDYTPA K+PPIHN
Sbjct: 63 LAMDYTPARKKPPIHN 74

[Close]

BLAST of Csor.00g142650 vs. NCBI nr
Match: RXI09430.1 (hypothetical protein DVH24_034047 [Malus domestica])

HSP 1 Score: 58.9 bits (141), Expect = 2.14e-09
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGD--ERPEDLLVHTNKDKKMEGSDQL 61
          A+ C+ LV VA FLLCF S T  GRS+ +V    GD  ++ ED      +D+     + L
Sbjct: 3  AIPCKHLVVVAFFLLCFVSITAQGRSLGLVSKRAGDAYQKNEDDQAVVLQDE----INDL 62

Query: 62 VVMDYTPALKRPPIHN 75
          + MDYTPA K+PPIHN
Sbjct: 63 LAMDYTPARKKPPIHN 74

[Close]

BLAST of Csor.00g142650 vs. NCBI nr
Match: KAB2617336.1 (hypothetical protein D8674_013205 [Pyrus ussuriensis x Pyrus communis] >RXH75734.1 hypothetical protein DVH24_039433 [Malus domestica])

HSP 1 Score: 58.5 bits (140), Expect = 4.36e-09
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEG-----DERPEDLLVHTNKDKKMEG- 61
          A+ C+ LV VALFLLCF S T  GRS+ +  + +G      ++  DL   T K K+ +  
Sbjct: 3  AIPCKNLVVVALFLLCFISITAQGRSLELGVVSKGAADAHQKKSHDLHDTTFKQKQDDDQ 62

Query: 62 -------SDQLVVMDYTPALKRPPIHN 75
                 S+ L+ MDYTPA K+PPIHN
Sbjct: 63 GVVLPDESNDLLAMDYTPARKKPPIHN 89

[Close]

BLAST of Csor.00g142650 vs. NCBI nr
Match: EOX92343.1 (Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative [Theobroma cacao])

HSP 1 Score: 58.2 bits (139), Expect = 4.41e-09
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 3  VNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLVVM 62
          V C+ L+ VALFL CF STT   R+M V   E      + +L  T        +D+LV M
Sbjct: 4  VPCKHLLLVALFLFCFISTTAGARNMPVA-KETQKVHDDQVLTATEDGAPKINADELVSM 63

Query: 63 DYTPALKRPPIHN 75
          DYTPA ++PPIHN
Sbjct: 64 DYTPATRKPPIHN 75

[Close]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL
Match: A0A5N5F2S8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_000197 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.94e-11
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGD--ERPEDLLVHTNKDKKMEGSDQL 61
          A+ C+ LV VA FLLCF S T  GRS+ VV    GD  ++ ED      +D+    S+ L
Sbjct: 3  ALPCKNLVVVAFFLLCFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDE----SNDL 62

Query: 62 VVMDYTPALKRPPIHN 75
          + MDYTPA K+PPIHN
Sbjct: 63 LAMDYTPARKKPPIHN 74

[Close]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL
Match: A0A498KMP7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034047 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.03e-09
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGD--ERPEDLLVHTNKDKKMEGSDQL 61
          A+ C+ LV VA FLLCF S T  GRS+ +V    GD  ++ ED      +D+     + L
Sbjct: 3  AIPCKHLVVVAFFLLCFVSITAQGRSLGLVSKRAGDAYQKNEDDQAVVLQDE----INDL 62

Query: 62 VVMDYTPALKRPPIHN 75
          + MDYTPA K+PPIHN
Sbjct: 63 LAMDYTPARKKPPIHN 74

[Close]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL
Match: A0A498I047 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039433 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.11e-09
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEG-----DERPEDLLVHTNKDKKMEG- 61
          A+ C+ LV VALFLLCF S T  GRS+ +  + +G      ++  DL   T K K+ +  
Sbjct: 3  AIPCKNLVVVALFLLCFISITAQGRSLELGVVSKGAADAHQKKSHDLHDTTFKQKQDDDQ 62

Query: 62 -------SDQLVVMDYTPALKRPPIHN 75
                 S+ L+ MDYTPA K+PPIHN
Sbjct: 63 GVVLPDESNDLLAMDYTPARKKPPIHN 89

[Close]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL
Match: A0A5N5GP11 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_013205 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.11e-09
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 2  AVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEG-----DERPEDLLVHTNKDKKMEG- 61
          A+ C+ LV VALFLLCF S T  GRS+ +  + +G      ++  DL   T K K+ +  
Sbjct: 3  AIPCKNLVVVALFLLCFISITAQGRSLELGVVSKGAADAHQKKSHDLHDTTFKQKQDDDQ 62

Query: 62 -------SDQLVVMDYTPALKRPPIHN 75
                 S+ L+ MDYTPA K+PPIHN
Sbjct: 63 GVVLPDESNDLLAMDYTPARKKPPIHN 89

[Close]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL
Match: A0A061DQW2 (Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative OS=Theobroma cacao OX=3641 GN=TCM_001298 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.13e-09
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 3  VNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLVVM 62
          V C+ L+ VALFL CF STT   R+M V   E      + +L  T        +D+LV M
Sbjct: 4  VPCKHLLLVALFLFCFISTTAGARNMPVA-KETQKVHDDQVLTATEDGAPKINADELVSM 63

Query: 63 DYTPALKRPPIHN 75
          DYTPA ++PPIHN
Sbjct: 64 DYTPATRKPPIHN 75

The following BLAST results are available for this feature:

BLAST of Csor.00g142650 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g142650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604255.1	1.15e-45	100.00	hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB2597277.1	1.85e-10	48.68	hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis]	[more]
RXI09430.1	2.14e-09	46.05	hypothetical protein DVH24_034047 [Malus domestica]	[more]
KAB2617336.1	4.36e-09	42.53	hypothetical protein D8674_013205 [Pyrus ussuriensis x Pyrus communis] >RXH75734...	[more]
EOX92343.1	4.41e-09	45.21	Encodes a root meristem growth factor, Belongs to a family of functionally redun...	[more]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5F2S8	8.94e-11	48.68	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A498KMP7	1.03e-09	46.05	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034047 PE=4 SV=1	[more]
A0A498I047	2.11e-09	42.53	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039433 PE=4 SV=1	[more]
A0A5N5GP11	2.11e-09	42.53	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A061DQW2	2.13e-09	45.21	Encodes a root meristem growth factor, Belongs to a family of functionally redun...	[more]

BLAST of Csor.00g142650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 2..75
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 2..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g142650.m01	Csor.00g142650.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity