Csor.00g141090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g141090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 13595986 .. 13596237 (-)
RNA-Seq Expression	Csor.00g141090
Synteny	Csor.00g141090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGCCTAGCTGTTCCTCCTCCGGGCCTAAGGAGCCCATTAGGAAAGCTGAGCTTTTCTTCCTCTGGGCCTACGATGCCCGTTCGAAAGTTGGGCCTAGCTTTTCCTCCTCCTGGCCTACGGAGCCCGGTCGGAAAGCTCGTTGGGAAAGTTGGGCCTAGCTTTCCTCCTCCGGACCTATGGTGCCCGTTCGGAAGTTGTGCTAGCTTTTCCTCCTCCATAGCAGGGCTTCTTGTTGGGCCGAATTAG

mRNA sequence

ATGTTGGGCCTAGCTGTTCCTCCTCCGGGCCTAAGGAGCCCATTAGGAAAGCTGAGCTTTTCTTCCTCTGGGCCTACGATGCCCGTTCGAAAGTTGGGCCTAGCTTTTCCTCCTCCTGGCCTACGGAGCCCGGTCGGAAAGCTCGTTGGGAAAGTTGGGCCTAGCTTTCCTCCTCCGGACCTATGGTGCCCGTTCGGAAGTTGTGCTAGCTTTTCCTCCTCCATAGCAGGGCTTCTTGTTGGGCCGAATTAG

Coding sequence (CDS)

ATGTTGGGCCTAGCTGTTCCTCCTCCGGGCCTAAGGAGCCCATTAGGAAAGCTGAGCTTTTCTTCCTCTGGGCCTACGATGCCCGTTCGAAAGTTGGGCCTAGCTTTTCCTCCTCCTGGCCTACGGAGCCCGGTCGGAAAGCTCGTTGGGAAAGTTGGGCCTAGCTTTCCTCCTCCGGACCTATGGTGCCCGTTCGGAAGTTGTGCTAGCTTTTCCTCCTCCATAGCAGGGCTTCTTGTTGGGCCGAATTAG

Protein sequence

MLGLAVPPPGLRSPLGKLSFSSSGPTMPVRKLGLAFPPPGLRSPVGKLVGKVGPSFPPPDLWCPFGSCASFSSSIAGLLVGPN

Homology

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BLAST of Csor.00g141090 vs. NCBI nr
Match: KAG6608466.1 (hypothetical protein SDJN03_01808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (431), Expect = 2.36e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MLGLAVPPPGLRSPLGKLSFSSSGPTMPVRKLGLAFPPPGLRSPVGKLVGKVGPSFPPPD 60
          MLGLAVPPPGLRSPLGKLSFSSSGPTMPVRKLGLAFPPPGLRSPVGKLVGKVGPSFPPPD
Sbjct: 1  MLGLAVPPPGLRSPLGKLSFSSSGPTMPVRKLGLAFPPPGLRSPVGKLVGKVGPSFPPPD 60

Query: 61 LWCPFGSCASFSSSIAGLLVGPN 83
          LWCPFGSCASFSSSIAGLLVGPN
Sbjct: 61 LWCPFGSCASFSSSIAGLLVGPN 83

The following BLAST results are available for this feature:

BLAST of Csor.00g141090 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g141090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608466.1	2.36e-53	100.00	hypothetical protein SDJN03_01808, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g141090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g141090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g141090.m01	Csor.00g141090.m01	mRNA